View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3883_low_5 (Length: 714)
Name: NF3883_low_5
Description: NF3883
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3883_low_5 |
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Alignment Details
Target: chr3 (Bit Score: 381; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 381; E-Value: 0
Query Start/End: Original strand, 19 - 415
Target Start/End: Original strand, 46042133 - 46042529
Alignment:
| Q |
19 |
tgtagctcctttgatagatgatcatatttctctgctaatgctctatatgctctaaaggcttcttccacaaaatttatcagttctggtcttttcctatagt |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46042133 |
tgtagctcctttgatagatgatcatatttctctgctaatgctctatatgctctaaaggcttcttccacaaaatttatcagttctggtcttttcctatagt |
46042232 |
T |
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| Q |
119 |
acatttccgccctttgagcaaatgagtccccattatcatcaatgattttaagagcctcagccactatctcctccatatctgttaagtatttgtttgacat |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46042233 |
acatttccgccctttgagcaaatgagtccccattatcatcaatgattttaagagcctcagccactatctcctccatatctgttaagtatttgtttgacat |
46042332 |
T |
|
| Q |
219 |
taaatatttgttattcttcatgctattactaaataacatgattttcagattattttgacacatttatctgtttccatacattatgaatcattttgtttta |
318 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
46042333 |
taaatatttgttattcttcatgctattactaaataacatgattttcagattattttgacccatttatctgtttccatacattatgaatcattttgtttta |
46042432 |
T |
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| Q |
319 |
tttctttagaatccaattatatatctatacaatgtattctgttatatagatgtatatcatgtactactaagaaaatggtaaacaactaataaaagaa |
415 |
Q |
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| T |
46042433 |
tttctttagaatccaattatatatttaaacaatgtattctgttatatagatgtatatcatgttctactaagaaaatggtaaacaactaataaaagaa |
46042529 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 407 - 704
Target Start/End: Original strand, 46044778 - 46045075
Alignment:
| Q |
407 |
ataaaagaatgaaaatattgtcccgtaaatacaactcaaatggtaatagccggaacatttgatatgatgagagacgcaggttcaaacccgcaataaaaat |
506 |
Q |
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| T |
46044778 |
ataaaagaatgaaaatattgtcaagtaaatacaacttaaatggtaatagccggaacatttgatatgatgagagacgcaggttcaaacccgcaataaaaat |
46044877 |
T |
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| Q |
507 |
aaaaccattgacaatggattacaacgttagcagacataaaaatgatattcaaaccatatatgatgaaattttacgtagcaaaaaacataccttggagact |
606 |
Q |
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| T |
46044878 |
aaaaccattgacaatggattacaacgttagcagacataaaaatgatattcaaaccatatatgatgaaattttacgtagcaaaaaacataccttggagact |
46044977 |
T |
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| Q |
607 |
ttgttccagccattttgattgttttgtcctgatgtggctaacccaccaccatgaatatgcattggttgctgctcttcgcaacatatttttatcctatg |
704 |
Q |
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| T |
46044978 |
ttgttccagccattttgattgttttgtcctgatgtggctaacccaccaccatgaatatgcattggttgctgctcttcgcaacatatttttatcctatg |
46045075 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 54; Significance: 1e-21; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 589 - 678
Target Start/End: Complemental strand, 27973600 - 27973511
Alignment:
| Q |
589 |
aaacataccttggagactttgttccagccattttgattgttttgtcctgatgtggctaacccaccaccatgaatatgcattggttgctgc |
678 |
Q |
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||||||||||||||||| ||| |||| |||||||||||| |||||||| |||||||| |||||||||||||||||||||| ||||||| |
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| T |
27973600 |
aaacataccttggagacattgatccaaccattttgattgctttgtcctaatgtggctggcccaccaccatgaatatgcattacttgctgc |
27973511 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 606 - 696
Target Start/End: Original strand, 13751163 - 13751253
Alignment:
| Q |
606 |
tttgttccagccattttgattgttttgtcctgatgtggctaacccaccaccatgaatatgcattggttgctgctcttcgcaacatattttt |
696 |
Q |
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|||| |||| |||||||||||| ||||| |||| ||| ||| ||||||||||||||||||||||| | |||||||| ||||||| ||||| |
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| T |
13751163 |
tttgctccatccattttgattgctttgttctgacgtgactagcccaccaccatgaatatgcattgctagctgctctctgcaacattttttt |
13751253 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 29 - 151
Target Start/End: Complemental strand, 27974253 - 27974131
Alignment:
| Q |
29 |
ttgatagatgatcatatttctctgctaatgctctatatgctctaaaggcttcttccacaaaatttatcagttctggtcttttcctatagtacatttccgc |
128 |
Q |
| |
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|||||| |||||||||| | || ||||| |||||||||||| ||||||||||||| ||||| | | || || || ||||| || || |||||||| || |
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| T |
27974253 |
ttgataaatgatcatatctttcggctaaggctctatatgctttaaaggcttcttctacaaattcaacaagctcaggcctttttctgtaatacatttctgc |
27974154 |
T |
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| Q |
129 |
cctttgagcaaatgagtccccat |
151 |
Q |
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| T |
27974153 |
tctttgagaaaatgagtctccat |
27974131 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 48; Significance: 5e-18; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 595 - 690
Target Start/End: Original strand, 28754572 - 28754667
Alignment:
| Q |
595 |
accttggagactttgttccagccattttgattgttttgtcctgatgtggctaacccaccaccatgaatatgcattggttgctgctcttcgcaacat |
690 |
Q |
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||||||||| ||||||||| |||||||||||| ||||| || |||||||| |||||||||||||||| |||||| |||| |||||| ||||||| |
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| T |
28754572 |
accttggaggttttgttccatccattttgattgctttgttctaatgtggctggcccaccaccatgaataagcattgcttgcagctctttgcaacat |
28754667 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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