View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3883_low_6 (Length: 688)
Name: NF3883_low_6
Description: NF3883
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3883_low_6 |
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Alignment Details
Target: chr7 (Bit Score: 292; Significance: 1e-163; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 292; E-Value: 1e-163
Query Start/End: Original strand, 293 - 670
Target Start/End: Original strand, 6701510 - 6701887
Alignment:
| Q |
293 |
gtgaattctaacggtataaaatagatgatatgacagatggtaaatcagaattcgcttaaacaataggggttcaaa-tatctttaatctcagaattccctc |
391 |
Q |
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| T |
6701510 |
gtgaattctaacggtataaaatagatgatatgtcagatggtaaatcagaattcgcttaaacagtagggtttcaaagtatctttaatctcaaaattccctc |
6701609 |
T |
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| Q |
392 |
atgggtttgacatggtttattaatgttgctaacaatttgcaattgtattaaattattaacaataatnnnnnnnttgtactaagttctatatttcgttaac |
491 |
Q |
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| T |
6701610 |
atgggtttgacatgttttattaatgttgctaccaatttgcaattgtattaaattattaacaataataaaaaaattgtactaagttctatatttagttaac |
6701709 |
T |
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| Q |
492 |
ctcaatggttgttttnnnnnnntagttaacctcaatgacttatctttaaactccatttttaataggttcatatttgaagtatacctaataaatagtatga |
591 |
Q |
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| T |
6701710 |
ctcaatggttgtttt-aaaaaatagttaacctcaatgacttatctttaaacttcatttttaataggttcatatttgaagtatacctaataaatagtatga |
6701808 |
T |
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| Q |
592 |
acataaatcatgatcattatgcagctgtctatgatctaatatatattaagggtgataaaattaaaaatgttgtcttaat |
670 |
Q |
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| T |
6701809 |
acataaatcatgatcattatgcagctgtctatgatctaatatatattaagggtgataaaattaaaaatgttgtcttaat |
6701887 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 140; E-Value: 6e-73
Query Start/End: Original strand, 13 - 185
Target Start/End: Original strand, 6701231 - 6701402
Alignment:
| Q |
13 |
aatatccagacaaatatagaaaacgaaacatgcagctatataggacgaaatgttgagtgcatgacacattctaactataaaacaactttgtttaactacg |
112 |
Q |
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| T |
6701231 |
aatatccagacaaatatagaaaacgaaacatgcagctatataggaggaaatgttgagtgcatgacacattctaactataaaacaactttgtttaactacg |
6701330 |
T |
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| Q |
113 |
ctgctaatgacgatgataaacatatnnnnnnnnctttagttggtaccattattcttatatgggttaaatgtac |
185 |
Q |
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| T |
6701331 |
ctgctaatgacgatgataaacatat-aaaaaaactttagttggtaccattattcttatatgggttaaatgtac |
6701402 |
T |
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