View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3883_low_7 (Length: 599)

Name: NF3883_low_7
Description: NF3883
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3883_low_7
NF3883_low_7
[»] chr4 (35 HSPs)
chr4 (13-555)||(2467091-2467633)
chr4 (130-555)||(2477249-2477671)
chr4 (140-527)||(5106298-5106686)
chr4 (134-344)||(2525425-2525632)
chr4 (137-520)||(2490801-2491196)
chr4 (135-278)||(2621400-2621540)
chr4 (222-333)||(2486062-2486173)
chr4 (398-519)||(2525703-2525824)
chr4 (204-311)||(5102293-5102400)
chr4 (134-320)||(2533983-2534166)
chr4 (134-337)||(2518903-2519103)
chr4 (409-511)||(2486264-2486366)
chr4 (134-336)||(5035292-5035491)
chr4 (392-519)||(5035562-5035689)
chr4 (146-271)||(2391263-2391385)
chr4 (395-508)||(2519176-2519289)
chr4 (455-533)||(5102065-5102143)
chr4 (141-278)||(2547221-2547355)
chr4 (14-72)||(2477145-2477203)
chr4 (14-68)||(5102503-5102557)
chr4 (146-186)||(2367989-2368029)
chr4 (14-74)||(5106722-5106782)
chr4 (298-353)||(2361143-2361198)
chr4 (216-271)||(2381635-2381690)
chr4 (390-509)||(2621163-2621282)
chr4 (455-513)||(2168019-2168077)
chr4 (306-360)||(2376388-2376442)
chr4 (451-517)||(2381371-2381437)
chr4 (13-51)||(2518809-2518847)
chr4 (216-261)||(2361217-2361262)
chr4 (216-269)||(2482529-2482582)
chr4 (14-51)||(2490705-2490742)
chr4 (146-186)||(2373555-2373595)
chr4 (146-194)||(2546826-2546874)
chr4 (146-186)||(12124527-12124567)
[»] chr7 (1 HSPs)
chr7 (455-519)||(2576388-2576452)


Alignment Details
Target: chr4 (Bit Score: 535; Significance: 0; HSPs: 35)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 535; E-Value: 0
Query Start/End: Original strand, 13 - 555
Target Start/End: Original strand, 2467091 - 2467633
Alignment:
Q  13 aaaattacgagataaagcaatcttgcggagttttggaagttccagcaattgattatcatcatatgcaaaacgagtatcctcatcaccatcaagcacagaa 112  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2467091 aaaattacgagataaagcaatcttgcggagttttggaagttccagcaattgattatcatcatatgcaaaacgagtatcctcatcaccatcaagcacagaa 2467190  T
Q  113 taagtatgataatcaaggtccgtaaggatgagctcttcgagtagagggaaacaatcagcaatgaagaaaagatcgttcttgtcgatatcaaaagcaattc 212  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2467191 taagtatgataatcaaggtccgtaaggatgagctcttcgagtaaagggaaacaatcagcaatgaagaaaagatcgttcttgtcgatatcaaaagcaattc 2467290  T
Q  213 ggtaacaagtgagtgatgtcaaatttttcatctctttggagaaagctcgcaacccatctgcaggaaccgttatggggtggtagagagtgagggatttgag 312  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2467291 ggtaacaagtgagtgatgtcaaatttttcatctctttggagaaagctcgcaacccatctgcaggaaccgttatggggtggtagagagtgagggatttgag 2467390  T
Q  313 gtccaaagggaaagtggagattttgttaagaagtgcgttgaggtcactttctaccgagagagtgatgtcaattgatctgatattggggaacctttcaaag 412  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2467391 gtccaaagggaaagtggagattttggtaagaagtgcgttgaggtcactttctaccgagagagtgatgtcaattgatctgatattggggaacctttcaaag 2467490  T
Q  413 agacgatgaagtaaagggattgttccgtcggaaatcgagacggagaatcgaagactgttggtaatggacaaaaactgttttgagacgacggagagagact 512  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2467491 agacgatgaagtaaagggattgttccgtcggaaatcgagacggagaatcgaagactgttggtaatggacaaaaactgttttgagacgacggagagagact 2467590  T
Q  513 tgaaactgtcacggagagagacagcagagaggttagaagctag 555  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  2467591 tgaaactgtcacggagagagacagcagagaggttagaagctag 2467633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 130 - 555
Target Start/End: Original strand, 2477249 - 2477671
Alignment:
Q  130 gtccgtaaggatgagctcttcgagtagagggaaacaatcagcaatgaagaaaagatcgttcttgtcgat-atcaaaagcaattcggtaacaagtgagtga 228  Q
    |||||| |||||||| ||||| || | ||||||||||| || ||||||||| ||||| ||| ||||||| ||| || |||| | ||||||  || |  ||    
T  2477249 gtccgtgaggatgagttcttctagcaaagggaaacaattagaaatgaagaagagatcattcctgtcgatcatcgaa-gcaaattggtaaccggtaaaaga 2477347  T
Q  229 tgtcaaatttttcatctctttggagaaagctcgcaacccatctgcaggaaccgttatggggtggtagagagtgagggatttgaggtccaaagggaaagtg 328  Q
    ||| ||||||||||||| ||| || ||||||| |||||||| | ||||||||||  |||||||||||||||  || ||| ||||||| | ||  ||||||    
T  2477348 tgttaaatttttcatcttttttgacaaagctctcaacccatttacaggaaccgtggtggggtggtagagagctagcgatctgaggtctatagctaaagtg 2477447  T
Q  329 gagattttgttaagaagtgcgttgaggtcactttctaccgagagagtgatgtcaattgatctgatattggggaacctttcaaagagacgatgaagtaaag 428  Q
    || |||| | |||||||  | |  ||||||||||||     |||||||||||  |  ||| |||  || |||||||||| ||||||| |||||||  |||    
T  2477448 gatatttgggtaagaagctcatcaaggtcactttctct---gagagtgatgtttagggatgtgacgttagggaacctttgaaagagaggatgaagggaag 2477544  T
Q  429 ggattgttccgtcggaaatcgagacggagaatcgaagactgttggtaatggacaaaaactgttttgagacgacggagagagacttgaaactgtcacggag 528  Q
    |||| |||   |||||||| |  || |||||||||||||||||||| ||||||| ||||| ||||||||| || ||||||||||||||||||| ||||||    
T  2477545 ggatggtttgatcggaaattgtcacagagaatcgaagactgttggttatggacagaaactcttttgagacaaccgagagagacttgaaactgttacggag 2477644  T
Q  529 agagacagcagagaggttagaagctag 555  Q
    ||||| ||| || ||||||||| ||||    
T  2477645 agagatagcggaaaggttagaatctag 2477671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 140 - 527
Target Start/End: Complemental strand, 5106686 - 5106298
Alignment:
Q  140 atgagctcttcgagtagagggaaacaatcagcaatgaagaaaagatcgttcttgtcgatatcaaaagcaattcggtaacaagtgagtgatgtcaaatttt 239  Q
    ||||| |||||||||| |||||||||||||||||||||||| |||||  ||||||| | | |  |||||||||||||||||||||  |||||||||||||    
T  5106686 atgagttcttcgagtaaagggaaacaatcagcaatgaagaagagatcactcttgtctacacccgaagcaattcggtaacaagtgatagatgtcaaatttt 5106587  T
Q  240 tcatctctttggagaaagctcgcaacccatctgcaggaaccgttatggggtggtagagagtgagggatttgaggtccaaagggaaagtggagattttgtt 339  Q
    |||||| |  |||||||||||||||||||  |  ||||| | | |||||||||||||||| |||  ||||||  |  ||||||||||  ||||||| ||     
T  5106586 tcatctttagggagaaagctcgcaacccaattttaggaaacttaatggggtggtagagagcgagcaatttgatatttaaagggaaagcagagatttggta 5106487  T
Q  340 aagaagtgcgttgaggtcactttctaccgagagagtgatgt----caattgatctgatattggggaacctttcaaagagacgatgaagtaaagggattgt 435  Q
     |||||  ||||||||||   | |    |||||||||||||      | |||| |||  |  ||||||||||  ||||| |||||||  |||||||| ||    
T  5106486 cagaagctcgttgaggtc---tccggaggagagagtgatgttgagtgagtgatgtgacgtaagggaaccttttgaagaggcgatgaatgaaagggatggt 5106390  T
Q  436 tccgtcggaaatcgagacggagaatcgaagactgttggtaatggacaaaaactgttttgagacgacggagagagacttgaaactgtcacgga 527  Q
    |   |  |  || | ||| ||||||||| ||| |||||| |||||||||||||||||||||||| | ||||||||||||||||||| |||||    
T  5106389 ttgattagtgattgtgaccgagaatcgaggacggttggtgatggacaaaaactgttttgagacggcagagagagacttgaaactgttacgga 5106298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 134 - 344
Target Start/End: Original strand, 2525425 - 2525632
Alignment:
Q  134 gtaaggatgagctcttcgagtagagggaaacaatcagcaatgaagaaaagatcgttcttgtcgatatcaaaagcaattcggtaacaagtgagtgatgtca 233  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||  ||||| |||||||  |||  ||   || || | ||||||||||| |||||||    
T  2525425 gtaaggatgagttcttcgagtagagggaaacaatcagcaatgaagagcagatcattcttgttaata--aatctcagtt-gataacaagtgagagatgtca 2525521  T
Q  234 aatttttcatctctttggagaaagctcgcaacccatctgcaggaaccgttatggggtggtagagagtgagggatttgaggtccaaagggaaagtggagat 333  Q
    |||||||||| |  ||||| ||| | |||||| ||| |  ||||||| |   |||||||||||||||||| ||||||||||| |||||||||||||||||    
T  2525522 aatttttcattttcttggacaaaacacgcaactcattttgaggaaccttgggggggtggtagagagtgagcgatttgaggtctaaagggaaagtggagat 2525621  T
Q  334 tttgttaagaa 344  Q
    || ||| ||||    
T  2525622 ttggtttagaa 2525632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 137 - 520
Target Start/End: Original strand, 2490801 - 2491196
Alignment:
Q  137 aggatgagctcttcgagtagagggaaacaatcagcaatgaagaaaagatcgttcttgtcgatatcaaaagcaattcggtaacaagtgagtgatgtcaaat 236  Q
    |||||||| || ||||||| |||||||||||||||||| || || ||||| ||||||| ||||   ||    ||||| ||||||||||| ||||||||||    
T  2490801 aggatgagttcgtcgagtaaagggaaacaatcagcaataaaaaagagatcattcttgttgata---aacctcattcgataacaagtgagagatgtcaaat 2490897  T
Q  237 ttttcatctctttggagaaagctcgcaacccatctgcaggaaccgttatggggtggtagagagtgagggatttgaggtccaaagggaaagtggagatttt 336  Q
    ||||||||     ||| |||||||||||  ||| ||| |||||| | || || | |||||||| ||| |||||||||||||||||||||||||||||||     
T  2490898 ttttcatcgtcccggacaaagctcgcaattcatttgcgggaaccctgattggctcgtagagagcgagcgatttgaggtccaaagggaaagtggagatttg 2490997  T
Q  337 gttaagaagtgcgttgaggtcactttcta----cc-----------gagagagtgatgtcaattgatctgatattggggaacctttcaaagagacgatga 421  Q
       ||||||  || ||||||||  |||||    ||           ||||| ||||| |  |||||| | || || |||||||||||||||||||||| |    
T  2490998 tccaagaagctcgctgaggtcaacttctaggttcctgtatcgggaagagagggtgatattgattgatgtaatgttagggaacctttcaaagagacgatta 2491097  T
Q  422 agtaaagggattgttccgtcggaaatcgagacggagaatcgaagactgttggtaatggacaaaaactgttttgagacgacggagagagacttgaaactg 520  Q
    || |||||||||||| | ||||| || | ||| || ||||| |||| ||| || ||||||| |||||||||||||||||  ||||||||| ||||||||    
T  2491098 aggaaagggattgttgcatcggagattgtgaccgaaaatcggagacggtttgtgatggacagaaactgttttgagacgagtgagagagacctgaaactg 2491196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 135 - 278
Target Start/End: Complemental strand, 2621540 - 2621400
Alignment:
Q  135 taaggatgagctcttcgagtagagggaaacaatcagcaatgaagaaaagatcgttcttgtcgatatcaaaagcaattcggtaacaagtgagtgatgtcaa 234  Q
    ||||| |||| |||||||||| ||||||||||||||||| |||||| ||||| ||||||  ||| | |  |   ||||||||||||||||| ||||||||    
T  2621540 taaggttgagttcttcgagtaaagggaaacaatcagcaaggaagaatagatcattcttgcggattttatta---attcggtaacaagtgagagatgtcaa 2621444  T
Q  235 atttttcatctctttggagaaagctcgcaacccatctgcaggaa 278  Q
    ||||||||| | |||||||||||||||||||||||||| |||||    
T  2621443 atttttcatatttttggagaaagctcgcaacccatctgtaggaa 2621400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 222 - 333
Target Start/End: Original strand, 2486062 - 2486173
Alignment:
Q  222 tgagtgatgtcaaatttttcatctctttggagaaagctcgcaacccatctgcaggaaccgttatggggtggtagagagtgagggatttgaggtccaaagg 321  Q
    |||| ||||||||||||||||||| |||||| ||||||||||   ||| |||||||| | | ||||| | |||||||||||| |||||||||||||||||    
T  2486062 tgagagatgtcaaatttttcatctttttggacaaagctcgcagagcatttgcaggaagcctgatgggctcgtagagagtgagtgatttgaggtccaaagg 2486161  T
Q  322 gaaagtggagat 333  Q
    ||||||||||||    
T  2486162 gaaagtggagat 2486173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 398 - 519
Target Start/End: Original strand, 2525703 - 2525824
Alignment:
Q  398 gggaacctttcaaagagacgatgaagtaaagggattgttccgtcggaaatcgagacggagaatcgaagactgttggtaatggacaaaaactgttttgaga 497  Q
    |||||||||||||||||||||| ||| |||||||| ||| | | ||| || | |||  ||||||||||||||||||| ||||||| ||||||||||||||    
T  2525703 gggaacctttcaaagagacgattaagaaaagggatagttgcattggagattgtgaccaagaatcgaagactgttggtgatggacagaaactgttttgaga 2525802  T
Q  498 cgacggagagagacttgaaact 519  Q
    ||| |||||||||  |||||||    
T  2525803 cgagggagagagatctgaaact 2525824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 204 - 311
Target Start/End: Complemental strand, 5102400 - 5102293
Alignment:
Q  204 aagcaattcggtaacaagtgagtgatgtcaaatttttcatctctttggagaaagctcgcaacccatctgcaggaaccgttatggggtggtagagagtgag 303  Q
    |||||||||||||||||||||  ||||||||||||||||||| || |||||| ||||||||||| | || ||||| | | |||||||||||||||| |||    
T  5102400 aagcaattcggtaacaagtgatagatgtcaaatttttcatcttttgggagaatgctcgcaacccttttgtaggaagcttaatggggtggtagagagcgag 5102301  T
Q  304 ggatttga 311  Q
     |||||||    
T  5102300 cgatttga 5102293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 134 - 320
Target Start/End: Original strand, 2533983 - 2534166
Alignment:
Q  134 gtaaggatgagctcttcgagtagagggaaacaatcagcaatgaagaaaagatcgttcttgtcgatatcaaaagc-aattcggtaacaagtgagtgatgtc 232  Q
    ||||||||||| ||||| |||| |||||||||||||||||| ||||| ||||| ||||||| |||||    |||  ||| | ||||||||||| |||||     
T  2533983 gtaaggatgagttcttcaagtaaagggaaacaatcagcaatcaagaagagatcattcttgttgatat----agctcatttgataacaagtgagagatgtt 2534078  T
Q  233 aaatttttcatctctttggagaaagctcgcaacccatctgcaggaaccgttatggggtggtagagagtgagggatttgaggtccaaag 320  Q
    |||||||||||||  ||||| |||||||| ||| ||| | |||||||  |    ||||||||||||||||| ||||||||||| ||||    
T  2534079 aaatttttcatcttcttggacaaagctcggaactcattttcaggaacactgtcagggtggtagagagtgagcgatttgaggtctaaag 2534166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 134 - 337
Target Start/End: Original strand, 2518903 - 2519103
Alignment:
Q  134 gtaaggatgagctcttcgagtagagggaaacaatcagcaatgaagaaaagatcgttcttgtcgatatcaaaagcaattcggtaacaagtgagtgatgtca 233  Q
    ||||||||||| |||| ||||| |||||||||||||||||||||||| ||||| ||||||| |||||   |    |||   |||||||||||  ||||||    
T  2518903 gtaaggatgagttctttgagtaaagggaaacaatcagcaatgaagaagagatcattcttgtggatat---atttcatttaataacaagtgagatatgtca 2518999  T
Q  234 aatttttcatctctttggagaaagctcgcaacccatctgcaggaaccgttatggggtggtagagagtgagggatttgaggtccaaagggaaagtggagat 333  Q
    |||||||||| | ||  || |||||| ||||||| |||  |||||  || || || |||||||||||||| ||| ||||||| |||||||||||| | ||    
T  2519000 aatttttcatgttttgagacaaagcttgcaacccttctttaggaagggtgataggatggtagagagtgagcgatatgaggtctaaagggaaagtgcatat 2519099  T
Q  334 tttg 337  Q
    ||||    
T  2519100 tttg 2519103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 409 - 511
Target Start/End: Original strand, 2486264 - 2486366
Alignment:
Q  409 aaagagacgatgaagtaaagggattgttccgtcggaaatcgagacggagaatcgaagactgttggtaatggacaaaaactgttttgagacgacggagaga 508  Q
    ||||||||||||||| ||||||||||||   ||||| || | ||| |||||||| |||| |||||| ||||||| ||||||||||||||||| |||||||    
T  2486264 aaagagacgatgaaggaaagggattgttttctcggagattgtgaccgagaatcggagacggttggtgatggacagaaactgttttgagacgagggagaga 2486363  T
Q  509 gac 511  Q
    |||    
T  2486364 gac 2486366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 134 - 336
Target Start/End: Original strand, 5035292 - 5035491
Alignment:
Q  134 gtaaggatgagctcttcgagtagagggaaacaatcagcaatgaagaaaagatcgttcttgtcgatatcaaaagcaattcggtaacaagtgagtgatgtca 233  Q
    |||||||| || |||||||||| |||||||||||||||||| ||||||||||| ||||||| |||   |||    ||| | ||||||| ||| || || |    
T  5035292 gtaaggattagttcttcgagtaaagggaaacaatcagcaatcaagaaaagatcattcttgttgat---aaatctcatttgataacaagcgagagacgtta 5035388  T
Q  234 aatttttcatctctttggagaaagctcgcaacccatctgcaggaaccgttatggggtggtagagagtgagggatttgaggtccaaagggaaagtggagat 333  Q
    || |||||||||  | ||| |||||||||||| ||| | |||||||| | |  | |||||| |||||||| ||||||||||  |||||| ||| ||||||    
T  5035389 aacttttcatcttctcggacaaagctcgcaactcattttcaggaaccctgacagcgtggtaaagagtgagcgatttgaggtttaaaggggaagcggagat 5035488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 392 - 519
Target Start/End: Original strand, 5035562 - 5035689
Alignment:
Q  392 atattggggaacctttcaaagagacgatgaagtaaagggattgttccgtcggaaatcgagacggagaatcgaagactgttggtaatggacaaaaactgtt 491  Q
    ||||| |||||||||||||||||||||  ||| |||||||||||| | || || ||   |||  |||||||||||| |||||| ||||| | ||||||||    
T  5035562 atattagggaacctttcaaagagacgactaaggaaagggattgttgcctcagagattttgaccaagaatcgaagacggttggtgatggagagaaactgtt 5035661  T
Q  492 ttgagacgacggagagagacttgaaact 519  Q
    |||| |||| ||| |||||| |||||||    
T  5035662 ttgaaacgaaggaaagagacctgaaact 5035689  T

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Target: chr4; HSP #15
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 146 - 271
Target Start/End: Complemental strand, 2391385 - 2391263
Alignment:
Q  146 tcttcgagtagagggaaacaatcagcaatgaagaaaagatcgttcttgtcgatatcaaaagcaattcggtaacaagtgagtgatgtcaaatttttcatct 245  Q
    |||||||||| |||||| |||||| |||||||||| | ||| ||||||| |||   ||||  ||||||| ||||||| || || ||||||||||||||||    
T  2391385 tcttcgagtaaagggaagcaatcaacaatgaagaagatatccttcttgttgatccaaaaa--aattcgg-aacaagtaagagaggtcaaatttttcatct 2391289  T
Q  246 ctttggagaaagctcgcaacccatct 271  Q
     |||||| |||||||| |||||||||    
T  2391288 ttttggacaaagctcggaacccatct 2391263  T

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Target: chr4; HSP #16
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 395 - 508
Target Start/End: Original strand, 2519176 - 2519289
Alignment:
Q  395 ttggggaacctttcaaagagacgatgaagtaaagggattgttccgtcggaaatcgagacggagaatcgaagactgttggtaatggacaaaaactgttttg 494  Q
    ||||||||||| ||||||||||||||||| ||||||||||||   || || || | ||| ||| |||||| || |||||| ||||||| |||||||||||    
T  2519176 ttggggaacctatcaaagagacgatgaaggaaagggattgtttgatctgagattgtgactgaggatcgaaaacggttggtgatggacagaaactgttttg 2519275  T
Q  495 agacgacggagaga 508  Q
    | || || ||||||    
T  2519276 aaacaacagagaga 2519289  T

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Target: chr4; HSP #17
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 455 - 533
Target Start/End: Complemental strand, 5102143 - 5102065
Alignment:
Q  455 gagaatcgaagactgttggtaatggacaaaaactgttttgagacgacggagagagacttgaaactgtcacggagagaga 533  Q
    |||||||||||||| || || || |||||||||||||| |||||| | ||||||||||||||||| || || |||||||    
T  5102143 gagaatcgaagactattagtgatagacaaaaactgtttcgagacgccagagagagacttgaaactatctcgaagagaga 5102065  T

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Target: chr4; HSP #18
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 141 - 278
Target Start/End: Original strand, 2547221 - 2547355
Alignment:
Q  141 tgagctcttcgagtagagggaaacaatcagcaatgaagaaaagatcgttcttgtcgatatcaaaagcaattcggtaacaagtgagtgatgtcaaattttt 240  Q
    |||| ||||| |||| |||||||||||||||||||||||| | ||| ||||||  ||||   || |  |||  | ||||| |||| || |||||||||||    
T  2547221 tgagttcttcaagtaaagggaaacaatcagcaatgaagaataaatcattcttgctgata---aaggtgattttggaacaaatgagagacgtcaaattttt 2547317  T
Q  241 catctctttggagaaagctcgcaacccatctgcaggaa 278  Q
    ||||| ||  || |||||||||||||||| ||||||||    
T  2547318 catcttttcagacaaagctcgcaacccatttgcaggaa 2547355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 14 - 72
Target Start/End: Original strand, 2477145 - 2477203
Alignment:
Q  14 aaattacgagataaagcaatcttgcggagttttggaagttccagcaattgattatcatc 72  Q
    |||||| ||||||||||||||||||||||||| |||||  ||| |||||||| ||||||    
T  2477145 aaattaggagataaagcaatcttgcggagtttgggaagcgccaacaattgatcatcatc 2477203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 14 - 68
Target Start/End: Complemental strand, 5102557 - 5102503
Alignment:
Q  14 aaattacgagataaagcaatcttgcggagttttggaagttccagcaattgattat 68  Q
    ||||||||||||||| |||||||||||||||| |||||| ||| |||| ||||||    
T  5102557 aaattacgagataaaacaatcttgcggagtttgggaagtgccaacaatcgattat 5102503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 146 - 186
Target Start/End: Complemental strand, 2368029 - 2367989
Alignment:
Q  146 tcttcgagtagagggaaacaatcagcaatgaagaaaagatc 186  Q
    |||||||||| |||||||||||||||||||||||| |||||    
T  2368029 tcttcgagtaaagggaaacaatcagcaatgaagaagagatc 2367989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 14 - 74
Target Start/End: Complemental strand, 5106782 - 5106722
Alignment:
Q  14 aaattacgagataaagcaatcttgcggagttttggaagttccagcaattgattatcatcat 74  Q
    |||||||| ||||| ||||||||||||||||| |||||| |||  ||||||| ||||||||    
T  5106782 aaattacgtgataacgcaatcttgcggagtttgggaagtgccaataattgatcatcatcat 5106722  T

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Target: chr4; HSP #23
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 298 - 353
Target Start/End: Complemental strand, 2361198 - 2361143
Alignment:
Q  298 agtgagggatttgaggtccaaagggaaagtggagattttgttaagaagtgcgttga 353  Q
    |||||| ||||||||||  |||||||||||||| |||||| | |||||||||||||    
T  2361198 agtgagtgatttgaggtttaaagggaaagtggatattttggtgagaagtgcgttga 2361143  T

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Target: chr4; HSP #24
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 216 - 271
Target Start/End: Complemental strand, 2381690 - 2381635
Alignment:
Q  216 aacaagtgagtgatgtcaaatttttcatctctttggagaaagctcgcaacccatct 271  Q
    ||||||| || || |||||||||||||||| |||||| |||||||| |||||||||    
T  2381690 aacaagtaagagaggtcaaatttttcatctttttggacaaagctcggaacccatct 2381635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 390 - 509
Target Start/End: Complemental strand, 2621282 - 2621163
Alignment:
Q  390 tgatattggggaacctttcaaagagacgatgaagtaaagggattgttccgtcggaaatcgagacggagaatcgaagactgttggtaatggacaaaaactg 489  Q
    ||||||| |||||||| || ||||| ||| |||  |||||||| |||   ||||| || | || |||||| || |||| |||||| ||||||||||||||    
T  2621282 tgatattagggaacctgtcgaagaggcgaggaatgaaagggatggttttatcggagattgtgatggagaaccgtagacggttggtgatggacaaaaactg 2621183  T
Q  490 ttttgagacgacggagagag 509  Q
    ||| || |||| ||||||||    
T  2621182 tttggatacgagggagagag 2621163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 455 - 513
Target Start/End: Original strand, 2168019 - 2168077
Alignment:
Q  455 gagaatcgaagactgttggtaatggacaaaaactgttttgagacgacggagagagactt 513  Q
    |||||||||||||| ||||| ||||||| |||||| || ||||| || |||||||||||    
T  2168019 gagaatcgaagactattggtgatggacagaaactgcttggagacaactgagagagactt 2168077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 306 - 360
Target Start/End: Complemental strand, 2376442 - 2376388
Alignment:
Q  306 atttgaggtccaaagggaaagtggagattttgttaagaagtgcgttgaggtcact 360  Q
    |||||||||| ||||||||||||||||||| | ||| ||| |||| |||||||||    
T  2376442 atttgaggtctaaagggaaagtggagatttgggtaacaagagcgtcgaggtcact 2376388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 451 - 517
Target Start/End: Complemental strand, 2381437 - 2381371
Alignment:
Q  451 gacggagaatcgaagactgttggtaatggacaaaaactgttttgagacgacggagagagacttgaaa 517  Q
    |||||||||||| ||||||||||| || || |  |||||||| ||||||| ||| ||||||||||||    
T  2381437 gacggagaatcggagactgttggtgatcgagagtaactgtttggagacgatggaaagagacttgaaa 2381371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 13 - 51
Target Start/End: Original strand, 2518809 - 2518847
Alignment:
Q  13 aaaattacgagataaagcaatcttgcggagttttggaag 51  Q
    |||||||| |||||||||||||||||||||||| |||||    
T  2518809 aaaattacaagataaagcaatcttgcggagtttaggaag 2518847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 216 - 261
Target Start/End: Complemental strand, 2361262 - 2361217
Alignment:
Q  216 aacaagtgagtgatgtcaaatttttcatctctttggagaaagctcg 261  Q
    |||||||||| ||||||||||||||||| | |||||| ||||||||    
T  2361262 aacaagtgagagatgtcaaatttttcatttttttggacaaagctcg 2361217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 216 - 269
Target Start/End: Original strand, 2482529 - 2482582
Alignment:
Q  216 aacaagtgagtgatgtcaaatttttcatctctttggagaaagctcgcaacccat 269  Q
    |||||||||| ||||||||||||||||||| ||| || | ||||| ||||||||    
T  2482529 aacaagtgagagatgtcaaatttttcatctttttagatagagctctcaacccat 2482582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 14 - 51
Target Start/End: Original strand, 2490705 - 2490742
Alignment:
Q  14 aaattacgagataaagcaatcttgcggagttttggaag 51  Q
    |||||| ||||||||||||||||||||||||| |||||    
T  2490705 aaattaagagataaagcaatcttgcggagtttgggaag 2490742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 146 - 186
Target Start/End: Complemental strand, 2373595 - 2373555
Alignment:
Q  146 tcttcgagtagagggaaacaatcagcaatgaagaaaagatc 186  Q
    |||||||| | |||||||||||||||||||||||| |||||    
T  2373595 tcttcgagcaaagggaaacaatcagcaatgaagaagagatc 2373555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 146 - 194
Target Start/End: Original strand, 2546826 - 2546874
Alignment:
Q  146 tcttcgagtagagggaaacaatcagcaatgaagaaaagatcgttcttgt 194  Q
    |||||||||| ||| |||||||||||||||||||| | ||| |||||||    
T  2546826 tcttcgagtaaaggaaaacaatcagcaatgaagaataaatcattcttgt 2546874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 146 - 186
Target Start/End: Original strand, 12124527 - 12124567
Alignment:
Q  146 tcttcgagtagagggaaacaatcagcaatgaagaaaagatc 186  Q
    ||||| |||| |||||||||||||||||||||||| |||||    
T  12124527 tcttctagtaaagggaaacaatcagcaatgaagaagagatc 12124567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 455 - 519
Target Start/End: Complemental strand, 2576452 - 2576388
Alignment:
Q  455 gagaatcgaagactgttggtaatggacaaaaactgttttgagacgacggagagagacttgaaact 519  Q
    |||||||||||||  ||||| ||||| |||||||||||  ||| |||| ||||| ||||||||||    
T  2576452 gagaatcgaagacgattggtgatggataaaaactgtttcaagatgacgaagagatacttgaaact 2576388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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