View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3883_low_8 (Length: 571)
Name: NF3883_low_8
Description: NF3883
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3883_low_8 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 503; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 503; E-Value: 0
Query Start/End: Original strand, 18 - 571
Target Start/End: Original strand, 35804964 - 35805519
Alignment:
| Q |
18 |
ttctcttcacgtgggaaaaaagtttttctattgcattaaaatggaattcctctaaaacaaaca---ttgtgcaagattctcgttcttctttttcatgata |
114 |
Q |
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| T |
35804964 |
ttctcttcacgtgggaaaaaagtttttctattgcattaaaatggaattcctctaaaacaaacaacattgtgcaagattctcgttcttctttttcatgata |
35805063 |
T |
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| Q |
115 |
ttatttattcttgagaataaatttctcttccataaaacaaacatttcctactctttctgtttaaacagaaacataaggattaagattctcttctcccttt |
214 |
Q |
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| T |
35805064 |
ttatttattcttgagaataaatttctcttccataaaacaaacattccctactctttctgtttaaacagaaacaaaaggattaagattctcttctcccttt |
35805163 |
T |
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| Q |
215 |
ttgtttatagtaaaatttatcacttcagcaaataaattcaaagattagtctataacttgaattagatccttaacaagttttaagttgacaaatttactgg |
314 |
Q |
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| T |
35805164 |
ttgtt-atggtaaaatttatcacttcagcaaataaattcaaagattagtctataacttgaattagatccttaacaagttttaagttgacaaatttactgg |
35805262 |
T |
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| Q |
315 |
cacaaatgtaagtttgaaattcaacttactccatggaacttgaaacttaaaattcaaattttgtatgcaacactttctcatatacaaaagacaaaaaatg |
414 |
Q |
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| T |
35805263 |
cacaaatgtaagtttgaaattcgacttactccatggaacttgaaacttaaaattcaaattttgtatgtaacactttctcatatacaaaagacaaaaaatg |
35805362 |
T |
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| Q |
415 |
ttaacaccattacttatttatgacatccctagacatctaaacacatccaattttattcactacttatttcactagatacctcaaacatgcattatatcat |
514 |
Q |
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| T |
35805363 |
ttaacaccattacttatttattacatccctagacatctaaacacatccaattttattcactacttatttcactagatgcctcaaacatgcattatatcat |
35805462 |
T |
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| Q |
515 |
attaattttaagcttctcttttgtttttccttgcactacacccgaatattgtttcaa |
571 |
Q |
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| T |
35805463 |
attaatttttagcttctcttttgtttttccttgcactacacccgaatattgtttcaa |
35805519 |
T |
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