View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3883_low_9 (Length: 421)
Name: NF3883_low_9
Description: NF3883
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3883_low_9 |
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Alignment Details
Target: chr1 (Bit Score: 306; Significance: 1e-172; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 306; E-Value: 1e-172
Query Start/End: Original strand, 10 - 402
Target Start/End: Original strand, 40726435 - 40726833
Alignment:
| Q |
10 |
attatactattttgttgtgaattaagtaaagagccaaggtgcattgacttaaggaaaaagaaatgaatagtctcttttattttatgctttagttgcaata |
109 |
Q |
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| T |
40726435 |
attatactattttgttgtgaa---agtaaagagccaaggtgcattgacttgaggaaaaagaaatgaatagtctcttttattttatgctttagttgcaata |
40726531 |
T |
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| Q |
110 |
tgaaggagatcaattgagtttgaagttgtgcgtgaccaatacaacattttagtgcatagccaagaagatgatttgtgc-------------tattcacca |
196 |
Q |
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||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
40726532 |
tgaaggagatcaattgagtttgaagttgtgcgtgaccaagacaacattttagtgcatagccaagaagatgatttgtgtagagtagctagcttattcacca |
40726631 |
T |
|
| Q |
197 |
tgagagacaaagggcttacaaagacacacttcttaaatgaatcaatttcttactgcactattcacatgagttggattcaaagacacactttttaccaaat |
296 |
Q |
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||||| |||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40726632 |
tgaga--caaagggcttgta--gacacacttcttaaatgaatcaatttcttactgcactattcacatgagttggattcaaagacacactttttaccaaat |
40726727 |
T |
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| Q |
297 |
tcacccaaacaaacttcaatcattcactaggtagactcgctgcccctcattgttgatgattccaacattgttatggtcaacaacttgtccttttatgggt |
396 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40726728 |
tcacccaaacaaacttcaatcattcactaggtagactcgctgcccctcattgttgatgattccaacattgttatggtcaacaacttgtccttttatgggt |
40726827 |
T |
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