View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3884_high_1 (Length: 849)
Name: NF3884_high_1
Description: NF3884
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3884_high_1 |
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Alignment Details
Target: chr4 (Bit Score: 376; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 376; E-Value: 0
Query Start/End: Original strand, 439 - 839
Target Start/End: Original strand, 52640108 - 52640508
Alignment:
| Q |
439 |
tattacaatttatcatgaagtgaaagcattccattaatatattgtcttcttgnnnnnnnatatttctgaagaagcatcatgtgacgagttacaacatcct |
538 |
Q |
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| T |
52640108 |
tattacaatttatcatgaagtgaaagcattccattaatatattgtcttcttgtttttttatatttctgaagaagcatcatgtgacgagttacaacatcct |
52640207 |
T |
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| Q |
539 |
caaataccacctcactacaaaacctagacttcacatttagaaaagcagcttctaatttgtccttgtgtttggtacacaaagagcataaatcttcaatatt |
638 |
Q |
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| T |
52640208 |
caaataccacctcactacaaaacctagacttcacatttagaaaagcagcttctaatttgtccttgtgtttggtacacaaagagcataaatcttcaatatt |
52640307 |
T |
|
| Q |
639 |
gaaagatttttctgtgttgaatccacttctggtttctttttccatacgaagaacctgaagccatcggatgtgctcaaatggatctttatttttctgaatt |
738 |
Q |
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| T |
52640308 |
gaaagatttttctgtgttgaatccacttctggcttctttttccatacgaagaacctgaagccatcggatgtgctcaaatggatctttatttttctgaatt |
52640407 |
T |
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| Q |
739 |
gcaacctctatgttactcagcacttccgaaaatctacattcattacatattctatcaaccaagtggagaaaagtcgttctctgcttctgaataagcctat |
838 |
Q |
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| T |
52640408 |
gcaacctctatgttactcagcacttccgaaaatctacattcattacatattctatcaaccaagtggagaaaagtcgttctctgcttctgaataagcctat |
52640507 |
T |
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| Q |
839 |
g |
839 |
Q |
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| T |
52640508 |
g |
52640508 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 348; E-Value: 0
Query Start/End: Original strand, 17 - 402
Target Start/End: Original strand, 52639686 - 52640071
Alignment:
| Q |
17 |
caacagttacagtcctcatgatcttgtctatcatacagattatcatggagtaactactcatccaactcctaagcatccaaaaccataggctgaagattta |
116 |
Q |
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| T |
52639686 |
caacagttacagtcctcatgatcttgtctatcatacagattatcatggagtaactactcatccaactcctaagcatccaaaaccataggctgaagattta |
52639785 |
T |
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| Q |
117 |
attttgatttgtgaaatatgcagacatgtattctagttcttaccaatatataaaatgtaatgccctgtgtgtgggaagaggnnnnnnnnnngttttgttt |
216 |
Q |
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| T |
52639786 |
attttgatttgtgaaatatgcagacatgtattctagttcttaccaatatataaaatgtaatgccctgtgtgtgggaagaggaaaaaaaaaagttttgttt |
52639885 |
T |
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| Q |
217 |
atacactggacctgattacatgattcattttgctcatctagtttgaccaatacattggcacataacttgtaagccatatatagttcacagaaacatagga |
316 |
Q |
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| T |
52639886 |
atacactggacctgattacatgattcattttgctcatctagtttgaccaatacattggcacataacttgtaagccatatatagttcacagaaacatagga |
52639985 |
T |
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| Q |
317 |
aaactgatgagctggtcagtaagacgctactgatgtcaagcattccagtaggtgaatatgatccagtaattcatcgccaaagcagg |
402 |
Q |
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| T |
52639986 |
aaactgatgagctggtcagtaagacgctactgatgtcaagcattccagtaggtgaatatgatccagtaattctttgccaaagcagg |
52640071 |
T |
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