View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3884_high_12 (Length: 262)

Name: NF3884_high_12
Description: NF3884
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3884_high_12
NF3884_high_12
[»] chr2 (8 HSPs)
chr2 (1-262)||(35340694-35340955)
chr2 (1-211)||(35351116-35351322)
chr2 (218-262)||(35346257-35346301)
chr2 (113-183)||(35343420-35343490)
chr2 (229-262)||(35348034-35348067)
chr2 (229-262)||(35355909-35355942)
chr2 (229-262)||(35371752-35371785)
chr2 (229-262)||(35374536-35374569)


Alignment Details
Target: chr2 (Bit Score: 238; Significance: 1e-132; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 238; E-Value: 1e-132
Query Start/End: Original strand, 1 - 262
Target Start/End: Original strand, 35340694 - 35340955
Alignment:
Q  1 ttcctaaagtaataatttccttgaatgcattttgtagatgcataaccaaaccaatcaccgtgacattcaccatatgcagcatgattgcattttggagaaa 100  Q
    |||||||||||||||||||||| ||| ||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  35340694 ttcctaaagtaataatttcctttaatacatattgtagatgcataaccaaaccaatcaccgtcacattcaccatatgcagcatgattgcattttggagaaa 35340793  T
Q  101 tattgaccatgaaaatggatgtcattttggttgtgaggttggctatgttaaaagtgtgtgattaaaagaagaaaatggaattaattagcaatatatgata 200  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35340794 tattgaccatggaaatggatgtcattttggttgtgaggttggctatgttaaaagtgtgtgattaaaagaagaaaatggaattaattagcaatatatgata 35340893  T
Q  201 tgctagggtacacaagaagttgtgtgagttgagttagtattggagagtttgtgtgttatata 262  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  35340894 tgctagggtacacaagaagttgtgtgagttgagttagtattggagagtttgtgtgatatata 35340955  T

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Target: chr2; HSP #2
Raw Score: 94; E-Value: 6e-46
Query Start/End: Original strand, 1 - 211
Target Start/End: Original strand, 35351116 - 35351322
Alignment:
Q  1 ttcctaaagtaataatttccttgaatgcattttgtagatgcataaccaaaccaatcaccgtgacattcaccatatgcagcatgattgcattttggagaaa 100  Q
    ||||||| |||||||||||||| |||||||  |||||||||||| |||||| ||||| | | ||||||||||||||||||||||||||| ||||||| |     
T  35351116 ttcctaatgtaataatttcctttaatgcatactgtagatgcatagccaaacgaatcaacatcacattcaccatatgcagcatgattgcactttggagcag 35351215  T
Q  101 tattgaccatgaaaatggatgtcattttggttgtgaggttggctatgttaaaagtgtgtgattaaaagaagaaaatggaattaattagcaatatatgata 200  Q
    ||||||| ||| ||||||||| |||||||||| ||| | ||  ||||| |||||| |||  |||||||||||||||||    ||||||||||||||||||    
T  35351216 tattgacaatggaaatggatgccattttggttttgacgctgattatgtgaaaagtttgtatttaaaagaagaaaatgg----aattagcaatatatgata 35351311  T
Q  201 tgctagggtac 211  Q
    | |||||||||    
T  35351312 tactagggtac 35351322  T

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Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 218 - 262
Target Start/End: Original strand, 35346257 - 35346301
Alignment:
Q  218 agttgtgtgagttgagttagtattggagagtttgtgtgttatata 262  Q
    ||||||||||| |||||||| ||||||||||||||||||||||||    
T  35346257 agttgtgtgagctgagttaggattggagagtttgtgtgttatata 35346301  T

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Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 113 - 183
Target Start/End: Complemental strand, 35343490 - 35343420
Alignment:
Q  113 aaatggatgtcattttggttgtgaggttggctatgttaaaagtgtgtgattaaaagaagaaaatggaatta 183  Q
    ||||||||| |||||||||| | | | ||||||||| |||||||| || | ||||||||||||||||||||    
T  35343490 aaatggatgccattttggtttttacgctggctatgtgaaaagtgtatgttaaaaagaagaaaatggaatta 35343420  T

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Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 229 - 262
Target Start/End: Complemental strand, 35348067 - 35348034
Alignment:
Q  229 ttgagttagtattggagagtttgtgtgttatata 262  Q
    ||||||||| ||||||||||||||||||||||||    
T  35348067 ttgagttaggattggagagtttgtgtgttatata 35348034  T

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Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 229 - 262
Target Start/End: Original strand, 35355909 - 35355942
Alignment:
Q  229 ttgagttagtattggagagtttgtgtgttatata 262  Q
    ||||||||| ||||||||||||||||||||||||    
T  35355909 ttgagttaggattggagagtttgtgtgttatata 35355942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 229 - 262
Target Start/End: Original strand, 35371752 - 35371785
Alignment:
Q  229 ttgagttagtattggagagtttgtgtgttatata 262  Q
    ||||||||| ||||||||||||||||||||||||    
T  35371752 ttgagttagaattggagagtttgtgtgttatata 35371785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 229 - 262
Target Start/End: Original strand, 35374536 - 35374569
Alignment:
Q  229 ttgagttagtattggagagtttgtgtgttatata 262  Q
    ||||||||| ||||||||||||||||||||||||    
T  35374536 ttgagttaggattggagagtttgtgtgttatata 35374569  T

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