View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3884_high_4 (Length: 491)
Name: NF3884_high_4
Description: NF3884
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3884_high_4 |
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Alignment Details
Target: chr2 (Bit Score: 282; Significance: 1e-158; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 282; E-Value: 1e-158
Query Start/End: Original strand, 1 - 282
Target Start/End: Original strand, 41094640 - 41094921
Alignment:
| Q |
1 |
aggaatctaggagaatggaggggaaggccgtatgtgctctttttagggtagagtggctttgggattttatttgagagttatcgtcatgattagctgtttg |
100 |
Q |
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| T |
41094640 |
aggaatctaggagaatggaggggaaggccgtatgtgctctttttagggtagagtggctttgggattttatttgagagttatcgtcatgattagctgtttg |
41094739 |
T |
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| Q |
101 |
acttctctactagggcatacatgctccaccgtgtaccattttggtagacaagatccacaaatcttccatatgccaaatatctactgttgtttaggaattt |
200 |
Q |
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| T |
41094740 |
acttctctactagggcatacatgctccaccgtgtaccattttggtagacaagatccacaaatcttccatatgccaaatatctactgttgtttaggaattt |
41094839 |
T |
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| Q |
201 |
gtcaaattgcatagatattcttaggagatggtgcaaacatgagatgagatagctcagaggatgcatgcatgaaacttgtacg |
282 |
Q |
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| T |
41094840 |
gtcaaattgcatagatattcttaggagatggtgcaaacatgagatgagatagctcagaggatgcatgcatgaaacttgtacg |
41094921 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 135; E-Value: 4e-70
Query Start/End: Original strand, 353 - 491
Target Start/End: Original strand, 41094992 - 41095130
Alignment:
| Q |
353 |
cagtgatggatttacgaatattttctaaatagtttgtaatcaagtagattcagacattgacaaatcaatggtagcctctagtatttcagtggaagtataa |
452 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41094992 |
cagtggtggatttacgaatattttctaaatagtttgtaatcaagtagattcagacattgacaaatcaatggtagcctctagtatttcagtggaagtataa |
41095091 |
T |
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| Q |
453 |
acattggaatctcaaagttgatgaatattggtccatgat |
491 |
Q |
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| T |
41095092 |
acattggaatctcaaagttgatgaatattggtccatgat |
41095130 |
T |
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