View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3884_high_6 (Length: 409)

Name: NF3884_high_6
Description: NF3884
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3884_high_6
NF3884_high_6
[»] chr2 (11 HSPs)
chr2 (15-409)||(35341156-35341551)
chr2 (333-409)||(35356125-35356201)
chr2 (15-106)||(35346778-35346867)
chr2 (331-409)||(35374751-35374827)
chr2 (322-409)||(35335980-35336068)
chr2 (234-327)||(35372076-35372167)
chr2 (234-281)||(35346594-35346641)
chr2 (151-327)||(35351719-35351887)
chr2 (377-409)||(35343142-35343174)
chr2 (377-409)||(35347814-35347846)
chr2 (377-409)||(35368600-35368632)


Alignment Details
Target: chr2 (Bit Score: 293; Significance: 1e-164; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 293; E-Value: 1e-164
Query Start/End: Original strand, 15 - 409
Target Start/End: Complemental strand, 35341551 - 35341156
Alignment:
Q  15 catcatcacgtcattattgttgtggataatcctctgaatcaagggaattcataaattgaatgtctaaagattttgagttaagttgtagtgtccaacaaat 114  Q
    ||||||||||||||||||||  |||||||||||||||||  |  ||||||||||||||||||||||||| |||||||||||||||||||||| ||||||     
T  35341551 catcatcacgtcattattgtgttggataatcctctgaattgaaagaattcataaattgaatgtctaaaggttttgagttaagttgtagtgtctaacaaag 35341452  T
Q  115 aatccaaatgtatgtaatattttggttcaaatgtggataatccttcgaatttcactcttgaaccaaaagtttgagagtttttcgcccttaaccca---aa 211  Q
    |||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||| ||      |     
T  35341451 aatccaaatgtatgaaatattttggttcaaatgtggataatcctttgaatttcactcttgacccaaaagtttgagagtttttcgcccttgacttcttgag 35341352  T
Q  212 agtatagtgttataagaatttataatatccccaaaattgaatatgatccaagcaaaattattactctcgtagccgcgtcattatggcttccaaagaatat 311  Q
     ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||  ||||| ||||||||||    
T  35341351 tgtatagtgttataagaatttataatatccccaaaattcaatatgatccaagcaaaattattactctcgtagccgcgtcatt--ggcttgcaaagaatat 35341254  T
Q  312 catcaaatgacaacatgtcgttccactttctacattcaacactttatatgttctacaaccattaagcatccactcaaacattctattttgtcaatatt 409  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35341253 catcaaatgacaacatgtcgttccactttctacattcaacactttatatgttctacaaccattaagcatccactcaaacattctattttgtcaatatt 35341156  T

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Target: chr2; HSP #2
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 333 - 409
Target Start/End: Complemental strand, 35356201 - 35356125
Alignment:
Q  333 tccactttctacattcaacactttatatgttctacaaccattaagcatccactcaaacattctattttgtcaatatt 409  Q
    |||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  35356201 tccactttctacatccaacactttatatgttctacatccattaagcatccactcaaacattctattttgtcaatatt 35356125  T

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Target: chr2; HSP #3
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 15 - 106
Target Start/End: Complemental strand, 35346867 - 35346778
Alignment:
Q  15 catcatcacgtcattattgttgtggataatcctctgaatcaagggaattcataaattgaatgtctaaagattttgagttaagttgtagtgtc 106  Q
    |||| ||||||||||||||||| ||||||||||||||||  ||||||||||||| | |||||||||||||  || |||||||||||| ||||    
T  35346867 catcgtcacgtcattattgttgcggataatcctctgaattgagggaattcataagtcgaatgtctaaaga--ttaagttaagttgtattgtc 35346778  T

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Target: chr2; HSP #4
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 331 - 409
Target Start/End: Complemental strand, 35374827 - 35374751
Alignment:
Q  331 gttccactttctacattcaacactttatatgttctacaaccattaagcatccactcaaacattctattttgtcaatatt 409  Q
    |||||||| ||||||| ||||||||||||||| |  ||||||||  |||||||||||||||||||||||||||||||||    
T  35374827 gttccactatctacatccaacactttatatgtcc--caaccattgtgcatccactcaaacattctattttgtcaatatt 35374751  T

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Target: chr2; HSP #5
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 322 - 409
Target Start/End: Complemental strand, 35336068 - 35335980
Alignment:
Q  322 caacatgtcgttccactttctacattcaacactttatatgttctacaaccat--taagcatccactcaaacattctattttgtcaatatt 409  Q
    |||| ||||||||||||||||||||  ||||||||||||||||  |||||||  || ||||||||||||||||| |||||||||||||||    
T  35336068 caacttgtcgttccactttctacatcaaacactttatatgttc-ccaaccattatatgcatccactcaaacattttattttgtcaatatt 35335980  T

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Target: chr2; HSP #6
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 234 - 327
Target Start/End: Complemental strand, 35372167 - 35372076
Alignment:
Q  234 taatatccccaaaa-ttgaatatgatccaagcaaaattattactctcgtagccgcgtcattatggcttccaaagaatatcatcaaatgacaacat 327  Q
    ||||||||| |||| || || |||||||||||||||||||||||||||  ||||||| ||  ||||||||||||||| |||||||||||||||||    
T  35372167 taatatcccaaaaagttcaacatgatccaagcaaaattattactctcgccgccgcgtgat--tggcttccaaagaat-tcatcaaatgacaacat 35372076  T

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Target: chr2; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 234 - 281
Target Start/End: Complemental strand, 35346641 - 35346594
Alignment:
Q  234 taatatccccaaaattgaatatgatccaagcaaaattattactctcgt 281  Q
    ||||||| |||||||| |||||||||||||||||||||||||||||||    
T  35346641 taatatcaccaaaattaaatatgatccaagcaaaattattactctcgt 35346594  T

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Target: chr2; HSP #8
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 151 - 327
Target Start/End: Complemental strand, 35351887 - 35351719
Alignment:
Q  151 ataatccttcgaatttcactcttgaaccaaaagtttgagagtttttcgcccttaacccaaaagtatagtgttataagaatttataatatccccaaaattg 250  Q
    |||||||| |||| | ||||||||| ||| ||||||||||||||||  ||||| |   | | |||||||||| ||| ||  |||||||||  ||||| |     
T  35351887 ataatcctccgaactccactcttgacccagaagtttgagagtttttgtcccttga---atatgtatagtgttttaaaaagatataatatctacaaaaata 35351791  T
Q  251 aa-tatgatccaagcaaaattattactctcgtagccgcgtcattatggcttccaaagaatatcatcaaatgacaacat 327  Q
    || ||||||||||||||||||||||||||||| ||   ||     |||||||||||||||||||| ||||||||||||    
T  35351790 aaatatgatccaagcaaaattattactctcgt-gcatggt-----tggcttccaaagaatatcatgaaatgacaacat 35351719  T

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Target: chr2; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 377 - 409
Target Start/End: Original strand, 35343142 - 35343174
Alignment:
Q  377 gcatccactcaaacattctattttgtcaatatt 409  Q
    |||||||||||||||||||||||||||||||||    
T  35343142 gcatccactcaaacattctattttgtcaatatt 35343174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 377 - 409
Target Start/End: Original strand, 35347814 - 35347846
Alignment:
Q  377 gcatccactcaaacattctattttgtcaatatt 409  Q
    |||||||||||||||||||||||||||||||||    
T  35347814 gcatccactcaaacattctattttgtcaatatt 35347846  T

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Target: chr2; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 377 - 409
Target Start/End: Complemental strand, 35368632 - 35368600
Alignment:
Q  377 gcatccactcaaacattctattttgtcaatatt 409  Q
    |||||||||||||||||||||||||||||||||    
T  35368632 gcatccactcaaacattctattttgtcaatatt 35368600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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