View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3884_low_10 (Length: 316)
Name: NF3884_low_10
Description: NF3884
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3884_low_10 |
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Alignment Details
Target: chr4 (Bit Score: 224; Significance: 1e-123; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 11 - 301
Target Start/End: Original strand, 43727281 - 43727572
Alignment:
| Q |
11 |
caaagggatcaagattaacggtcgagatactagaattcaaacagtcagaacattggcgaccattggatctagattagatggttcaaatttcaagctcgat |
110 |
Q |
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| T |
43727281 |
caaagggatcaagattaacagtcaagatactagaattcaaacagtcagaacattggcgaccattggatctaaattagatggttcgaatttcaagctcgat |
43727380 |
T |
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| Q |
111 |
attttagatttnnnnnnnntaaat-caaaatgtgtatattttgtaaaatgtatctaaattttaccggtcaccatgcattgtccgcatgaatatgggatat |
209 |
Q |
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| T |
43727381 |
attttagatttaaaaaaaaaaaattcaaaatgtgtatattttgtaaaatgtatctaaattttaacggtcaccatgcattgtccgcatgaatacgggatat |
43727480 |
T |
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| Q |
210 |
ctcaactgcaacaagtccattttcgtgtaaaaaagtgcctaaaatttcactaatatgttaccatagttgcataatagaaaaatgaatcaact |
301 |
Q |
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| T |
43727481 |
cccaactgcaacaagtccattttcgtgtaaaaaagtgtctaaaatttcactaatatgttaccatagttgcataatagaaaaatgaatcaact |
43727572 |
T |
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