View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3884_low_11 (Length: 310)
Name: NF3884_low_11
Description: NF3884
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3884_low_11 |
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| [»] chr2 (2 HSPs) |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 302; Significance: 1e-170; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 302; E-Value: 1e-170
Query Start/End: Original strand, 1 - 310
Target Start/End: Complemental strand, 21346140 - 21345831
Alignment:
| Q |
1 |
tcatcaaaggatttaggtttagaaagtttgaatctgtttcacttttttgcattgtgcagatgacaaagtaactgttttggagtcagaaaagcgcgccttg |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21346140 |
tcatcaaaggatttaggtttagaaagtttgaatctgtttcacttttttgcattgtgcagatgacaaagtaactgttttggagtcagaaaagcgcgccttg |
21346041 |
T |
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| Q |
101 |
gagaattctccagaagctcaagcaattagagaagctctcaacccttggagacatgttgatacaaaagaaacaaacaagccctaacgcgagtatgaaccat |
200 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21346040 |
gagaattctccagatgctcaagcaattagagaagctctcaacccttggagacatgttgatacaaaagaaacaaacaagccctaacgcgagtatgaaccat |
21345941 |
T |
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| Q |
201 |
tttattaaaatccatgaatgatacgtcaagaattttaccgagaatacgctggaagttgattgcatatggactgcttttctgttatactttatgattcatg |
300 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21345940 |
tttattaaaatccatgaatgatgcgtcaagaattttaccgagaatacgctggaagttgattgcatatggactgcttttctgttatactttatgattcatg |
21345841 |
T |
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| Q |
301 |
tggtggaatt |
310 |
Q |
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|||||||||| |
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| T |
21345840 |
tggtggaatt |
21345831 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 290; E-Value: 1e-163
Query Start/End: Original strand, 1 - 310
Target Start/End: Complemental strand, 22870 - 22562
Alignment:
| Q |
1 |
tcatcaaaggatttaggtttagaaagtttgaatctgtttcacttttttgcattgtgcagatgacaaagtaactgttttggagtcagaaaagcgcgccttg |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22870 |
tcatcaaaggatttaggtttagaaagtttgaatctgtttcacttttttgcattgtgcagatgacaaagtaactgttttggagtcagaaaagcgcgccttg |
22771 |
T |
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| Q |
101 |
gagaattctccagaagctcaagcaattagagaagctctcaacccttggagacatgttgatacaaaagaaacaaacaagccctaacgcgagtatgaaccat |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
22770 |
gagaattctccagaagctcaagcaattagagaagctctcaacccttggagacatgttgatacaaaagaaacaaacaagccctgacgcgagtatgaaccat |
22671 |
T |
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| Q |
201 |
tttattaaaatccatgaatgatacgtcaagaattttaccgagaatacgctggaagttgattgcatatggactgcttttctgttatactttatgattcatg |
300 |
Q |
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|||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
22670 |
tttattaaaatccatgaatgattcgtcaagaattttacagagaatacgctggaagttgattgcatatggactgcttttctgttatac-ttatgattcatg |
22572 |
T |
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| Q |
301 |
tggtggaatt |
310 |
Q |
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|||||||||| |
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| T |
22571 |
tggtggaatt |
22562 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 262; Significance: 1e-146; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 1 - 310
Target Start/End: Complemental strand, 29381214 - 29380906
Alignment:
| Q |
1 |
tcatcaaaggatttaggtttagaaagtttgaatctgtttcacttttttgcattgtgcagatgacaaagtaactgttttggagtcagaaaagcgcgccttg |
100 |
Q |
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||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
29381214 |
tcatcaaaggatttaggtttacaaagtttgaatctgtttcacttttttgcattgtgcagatgataaagtaactgttttggagtcagaaaagcgcgccttg |
29381115 |
T |
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| Q |
101 |
gagaattctccagaagctcaagcaattagagaagctctcaacccttggagacatgttgatacaaaagaaacaaacaagccctaacgcgagtatgaaccat |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||| |||| |
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| T |
29381114 |
gagaattctccagaagctcaagcaattagagaagctctcaacccttggagacatgttgatacaaaagaaacaaacaagccctgacgtgagtatgagccat |
29381015 |
T |
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| Q |
201 |
tttattaaaatccatgaatgatacgtcaagaattttaccgagaatacgctggaagttgattgcatatggactgcttttctgttatactttatgattcatg |
300 |
Q |
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|||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||| |
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| T |
29381014 |
tttattaaaatccatgaatgatttgtcaagaattttaccgagaatacgctggaagtcgattgcatatggactgcttttctgttatac-ttatgattcatg |
29380916 |
T |
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| Q |
301 |
tggtggaatt |
310 |
Q |
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| ||||||| |
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| T |
29380915 |
tcatggaatt |
29380906 |
T |
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