View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3884_low_13 (Length: 262)
Name: NF3884_low_13
Description: NF3884
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3884_low_13 |
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| [»] chr2 (8 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 238; Significance: 1e-132; HSPs: 8)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 238; E-Value: 1e-132
Query Start/End: Original strand, 1 - 262
Target Start/End: Original strand, 35340694 - 35340955
Alignment:
| Q |
1 |
ttcctaaagtaataatttccttgaatgcattttgtagatgcataaccaaaccaatcaccgtgacattcaccatatgcagcatgattgcattttggagaaa |
100 |
Q |
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| T |
35340694 |
ttcctaaagtaataatttcctttaatacatattgtagatgcataaccaaaccaatcaccgtcacattcaccatatgcagcatgattgcattttggagaaa |
35340793 |
T |
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| Q |
101 |
tattgaccatgaaaatggatgtcattttggttgtgaggttggctatgttaaaagtgtgtgattaaaagaagaaaatggaattaattagcaatatatgata |
200 |
Q |
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| T |
35340794 |
tattgaccatggaaatggatgtcattttggttgtgaggttggctatgttaaaagtgtgtgattaaaagaagaaaatggaattaattagcaatatatgata |
35340893 |
T |
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| Q |
201 |
tgctagggtacacaagaagttgtgtgagttgagttagtattggagagtttgtgtgttatata |
262 |
Q |
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| T |
35340894 |
tgctagggtacacaagaagttgtgtgagttgagttagtattggagagtttgtgtgatatata |
35340955 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 94; E-Value: 6e-46
Query Start/End: Original strand, 1 - 211
Target Start/End: Original strand, 35351116 - 35351322
Alignment:
| Q |
1 |
ttcctaaagtaataatttccttgaatgcattttgtagatgcataaccaaaccaatcaccgtgacattcaccatatgcagcatgattgcattttggagaaa |
100 |
Q |
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||||||| |||||||||||||| ||||||| |||||||||||| |||||| ||||| | | ||||||||||||||||||||||||||| ||||||| | |
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| T |
35351116 |
ttcctaatgtaataatttcctttaatgcatactgtagatgcatagccaaacgaatcaacatcacattcaccatatgcagcatgattgcactttggagcag |
35351215 |
T |
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| Q |
101 |
tattgaccatgaaaatggatgtcattttggttgtgaggttggctatgttaaaagtgtgtgattaaaagaagaaaatggaattaattagcaatatatgata |
200 |
Q |
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| T |
35351216 |
tattgacaatggaaatggatgccattttggttttgacgctgattatgtgaaaagtttgtatttaaaagaagaaaatgg----aattagcaatatatgata |
35351311 |
T |
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| Q |
201 |
tgctagggtac |
211 |
Q |
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| T |
35351312 |
tactagggtac |
35351322 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 218 - 262
Target Start/End: Original strand, 35346257 - 35346301
Alignment:
| Q |
218 |
agttgtgtgagttgagttagtattggagagtttgtgtgttatata |
262 |
Q |
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| T |
35346257 |
agttgtgtgagctgagttaggattggagagtttgtgtgttatata |
35346301 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 113 - 183
Target Start/End: Complemental strand, 35343490 - 35343420
Alignment:
| Q |
113 |
aaatggatgtcattttggttgtgaggttggctatgttaaaagtgtgtgattaaaagaagaaaatggaatta |
183 |
Q |
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| T |
35343490 |
aaatggatgccattttggtttttacgctggctatgtgaaaagtgtatgttaaaaagaagaaaatggaatta |
35343420 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 229 - 262
Target Start/End: Complemental strand, 35348067 - 35348034
Alignment:
| Q |
229 |
ttgagttagtattggagagtttgtgtgttatata |
262 |
Q |
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| T |
35348067 |
ttgagttaggattggagagtttgtgtgttatata |
35348034 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 229 - 262
Target Start/End: Original strand, 35355909 - 35355942
Alignment:
| Q |
229 |
ttgagttagtattggagagtttgtgtgttatata |
262 |
Q |
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| T |
35355909 |
ttgagttaggattggagagtttgtgtgttatata |
35355942 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 229 - 262
Target Start/End: Original strand, 35371752 - 35371785
Alignment:
| Q |
229 |
ttgagttagtattggagagtttgtgtgttatata |
262 |
Q |
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| T |
35371752 |
ttgagttagaattggagagtttgtgtgttatata |
35371785 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 229 - 262
Target Start/End: Original strand, 35374536 - 35374569
Alignment:
| Q |
229 |
ttgagttagtattggagagtttgtgtgttatata |
262 |
Q |
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| T |
35374536 |
ttgagttaggattggagagtttgtgtgttatata |
35374569 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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