View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3884_low_16 (Length: 240)

Name: NF3884_low_16
Description: NF3884
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3884_low_16
NF3884_low_16
[»] chr3 (12 HSPs)
chr3 (1-229)||(49150042-49150270)
chr3 (8-222)||(3659894-3660108)
chr3 (3-229)||(55025071-55025300)
chr3 (24-132)||(24731043-24731151)
chr3 (149-229)||(11896946-11897026)
chr3 (110-222)||(17718637-17718749)
chr3 (110-222)||(19019866-19019978)
chr3 (110-229)||(53608572-53608691)
chr3 (140-225)||(11890015-11890100)
chr3 (140-225)||(15473722-15473806)
chr3 (167-228)||(23424314-23424375)
chr3 (149-229)||(26432967-26433047)
[»] chr7 (4 HSPs)
chr7 (1-229)||(16770236-16770464)
chr7 (148-214)||(1579449-1579515)
chr7 (140-225)||(27781909-27781994)
chr7 (13-228)||(23208142-23208357)
[»] chr1 (8 HSPs)
chr1 (4-229)||(23464990-23465216)
chr1 (53-229)||(50236837-50237013)
chr1 (21-229)||(50451565-50451773)
chr1 (149-229)||(20284647-20284727)
chr1 (56-225)||(1524672-1524841)
chr1 (122-225)||(31325228-31325331)
chr1 (167-229)||(43298174-43298236)
chr1 (170-223)||(10103958-10104011)
[»] chr4 (6 HSPs)
chr4 (8-228)||(7587902-7588122)
chr4 (148-222)||(48847968-48848042)
chr4 (11-228)||(46784749-46784965)
chr4 (12-213)||(54477696-54477897)
chr4 (110-229)||(33803734-33803853)
chr4 (167-229)||(3881528-3881590)
[»] chr2 (9 HSPs)
chr2 (8-222)||(39012184-39012398)
chr2 (107-229)||(177252-177374)
chr2 (149-229)||(14653949-14654029)
chr2 (56-223)||(16322151-16322318)
chr2 (167-229)||(573005-573067)
chr2 (53-216)||(26791020-26791183)
chr2 (12-222)||(35135498-35135708)
chr2 (12-222)||(40327836-40328046)
chr2 (137-223)||(42403495-42403581)
[»] chr6 (5 HSPs)
chr6 (44-225)||(13599277-13599458)
chr6 (60-228)||(35233195-35233363)
chr6 (21-222)||(11297081-11297282)
chr6 (167-228)||(24894112-24894173)
chr6 (83-222)||(13027694-13027833)
[»] chr8 (6 HSPs)
chr8 (8-228)||(26708979-26709203)
chr8 (149-229)||(23132854-23132934)
chr8 (90-230)||(38348206-38348346)
chr8 (59-222)||(14759630-14759793)
chr8 (104-224)||(26586977-26587097)
chr8 (59-222)||(26973161-26973324)
[»] chr5 (5 HSPs)
chr5 (52-216)||(31814343-31814507)
chr5 (56-225)||(6641292-6641461)
chr5 (110-229)||(23944774-23944893)
chr5 (138-225)||(23620897-23620984)
chr5 (58-223)||(7816839-7817004)
[»] scaffold0214 (1 HSPs)
scaffold0214 (53-228)||(8666-8841)


Alignment Details
Target: chr3 (Bit Score: 205; Significance: 1e-112; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 1 - 229
Target Start/End: Complemental strand, 49150270 - 49150042
Alignment:
Q  1 tggaatttctgacaccctcgttgctctcattcctaaaaccgaccctcccaatacctacaaagactttagacccatcaacctttgcaatgttgtttacaag 100  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  49150270 tggaatttctgacaccctcgttgctctcattcctaaaaccgaacctcccaatacctacaaagactttagacccatcaacctttgcaatgttgtttacaag 49150171  T
Q  101 cttatcaccaaagtcttggttcaccgtctcaggccgctccttaatattattattggtccctattagagcagctttctgcctggtaggggcactactgaca 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||| |||||||||||||||||||||| |||||    
T  49150170 cttatcaccaaagtcttggttcaccgtctcaggccgctccttaatattataatcggtccctattagagcagttttctgcctggtaggggcactaatgaca 49150071  T
Q  201 actcaattgttttgcatgaaattgttcat 229  Q
    |||||||||||||||| ||||||||||||    
T  49150070 actcaattgttttgcaggaaattgttcat 49150042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 8 - 222
Target Start/End: Complemental strand, 3660108 - 3659894
Alignment:
Q  8 tctgacaccctcgttgctctcattcctaaaaccgaccctcccaatacctacaaagactttagacccatcaacctttgcaatgttgtttacaagcttatca 107  Q
    ||||| |||||| || | |||||||| || |||||||| ||||  || |  ||||||||||||||||| | ||| |||||| ||| |||||| || ||||    
T  3660108 tctgataccctcatttccctcattcccaagaccgacccccccagcacttttaaagactttagacccattagcctctgcaatattgcttacaaactcatca 3660009  T
Q  108 ccaaagtcttggttcaccgtctcaggccgctccttaatattattattggtccctattagagcagctttctgcctggtaggggcactactgacaactcaat 207  Q
    | ||||||||||||||||| ||||| ||  | |||||| |||| ||||| |||||| | || || ||||| |||||||||||||| |||||||| || ||    
T  3660008 ctaaagtcttggttcaccgcctcagaccaattcttaatgttatcattggcccctatcaaagtagttttctacctggtaggggcaccactgacaattcgat 3659909  T
Q  208 tgttttgcatgaaat 222  Q
    ||||||||| |||||    
T  3659908 tgttttgcaggaaat 3659894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 3 - 229
Target Start/End: Complemental strand, 55025300 - 55025071
Alignment:
Q  3 gaatttctgacaccctcgttgctctcattcctaaaaccgaccctccc---aatacctacaaagactttagacccatcaacctttgcaatgttgtttacaa 99  Q
    |||| |||||||||||| |||| |||||||| ||||||||||| |||   | ||| |  || || ||||||||||||| ||| |||||  |||| |||||    
T  55025300 gaatatctgacaccctcattgccctcattcccaaaaccgaccccccccccactacttttaaggaatttagacccatcagcctgtgcaacattgtgtacaa 55025201  T
Q  100 gcttatcaccaaagtcttggttcaccgtctcaggccgctccttaatattattattggtccctattagagcagctttctgcctggtaggggcactactgac 199  Q
     || ||||||||||||||||||||||| |||  |||  | || |||  ||||||||| |||||| | || || ||||| |||||||||||||| ||||||    
T  55025200 actcatcaccaaagtcttggttcaccgcctccagcccattctaaatgctattattggcccctatcaaagtagttttctacctggtaggggcaccactgac 55025101  T
Q  200 aactcaattgttttgcatgaaattgttcat 229  Q
    || |||||||||||||| ||| | ||||||    
T  55025100 aattcaattgttttgcaggaagtagttcat 55025071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 24 - 132
Target Start/End: Original strand, 24731043 - 24731151
Alignment:
Q  24 ctctcattcctaaaaccgaccctcccaatacctacaaagactttagacccatcaacctttgcaatgttgtttacaagcttatcaccaaagtcttggttca 123  Q
    |||||||||| |||| ||||||||||   |||||||||||||||||| | || | ||| || ||| |||| || ||||||||||||||||||||||||||    
T  24731043 ctctcattcccaaaatcgaccctccctccacctacaaagactttagatcgattagcctgtgtaatattgtgtataagcttatcaccaaagtcttggttca 24731142  T
Q  124 ccgtctcag 132  Q
    |||||||||    
T  24731143 ccgtctcag 24731151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 149 - 229
Target Start/End: Original strand, 11896946 - 11897026
Alignment:
Q  149 attattggtccctattagagcagctttctgcctggtaggggcactactgacaactcaattgttttgcatgaaattgttcat 229  Q
    ||||||||||||||| | ||||||||||||||||||||||||||| | || ||||| ||||||||||| |||||| |||||    
T  11896946 attattggtccctatcaaagcagctttctgcctggtaggggcactgcagataactctattgttttgcaggaaattattcat 11897026  T

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Target: chr3; HSP #6
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 110 - 222
Target Start/End: Complemental strand, 17718749 - 17718637
Alignment:
Q  110 aaagtcttggttcaccgtctcaggccgctccttaatattattattggtccctattagagcagctttctgcctggtaggggcactactgacaactcaattg 209  Q
    |||||||||||||| || ||||| ||  ||||||||| ||||||||| || ||  | ||||||||||||||||||||||| ||| |||| ||||| ||||    
T  17718749 aaagtcttggttcagcggctcagacctatccttaataatattattggcccttaccaaagcagctttctgcctggtaggggaacttctgataactccattg 17718650  T
Q  210 ttttgcatgaaat 222  Q
    ||||||| |||||    
T  17718649 ttttgcaggaaat 17718637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 110 - 222
Target Start/End: Complemental strand, 19019978 - 19019866
Alignment:
Q  110 aaagtcttggttcaccgtctcaggccgctccttaatattattattggtccctattagagcagctttctgcctggtaggggcactactgacaactcaattg 209  Q
    |||||||||||||| || ||||| ||  ||||||||| ||||||||| || ||  | ||||||||||||||||||||||| ||| |||| ||||| ||||    
T  19019978 aaagtcttggttcagcggctcagacctatccttaataatattattggcccttaccaaagcagctttctgcctggtaggggaacttctgataactccattg 19019879  T
Q  210 ttttgcatgaaat 222  Q
    ||||||| |||||    
T  19019878 ttttgcaggaaat 19019866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 110 - 229
Target Start/End: Complemental strand, 53608691 - 53608572
Alignment:
Q  110 aaagtcttggttcaccgtctcaggccgctccttaatattattattggtccctattagagcagctttctgcctggtaggggcactactgacaactcaattg 209  Q
    ||||| |||||||| ||||| |||||  ||||||||| ||||||||| || |   | ||||||||||||||||||||||| ||| |||| ||||| ||||    
T  53608691 aaagttttggttcagcgtcttaggcctatccttaataatattattggcccttgccaaagcagctttctgcctggtaggggaacttctgataactccattg 53608592  T
Q  210 ttttgcatgaaattgttcat 229  Q
    ||||||| |||||| |||||    
T  53608591 ttttgcaggaaattattcat 53608572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 140 - 225
Target Start/End: Complemental strand, 11890100 - 11890015
Alignment:
Q  140 cttaatattattattggtccctattagagcagctttctgcctggtaggggcactactgacaactcaattgttttgcatgaaattgt 225  Q
    ||||||| |||||| ||||||||  | |||||||| ||||| |||||||||||  |||||||| | ||||||||||| ||||||||    
T  11890100 cttaatagtattataggtccctaccaaagcagcttcctgccaggtaggggcacggctgacaacactattgttttgcaggaaattgt 11890015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 140 - 225
Target Start/End: Complemental strand, 15473806 - 15473722
Alignment:
Q  140 cttaatattattattggtccctattagagcagctttctgcctggtaggggcactactgacaactcaattgttttgcatgaaattgt 225  Q
    ||||||| ||||||||| |||||| | || || ||||||||||||| ||| ||| |||| ||||||||||||||||| ||||||||    
T  15473806 cttaataatattattggcccctatcaaagtagttttctgcctggta-gggtacttctgataactcaattgttttgcaggaaattgt 15473722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 167 - 228
Target Start/End: Original strand, 23424314 - 23424375
Alignment:
Q  167 agcagctttctgcctggtaggggcactactgacaactcaattgttttgcatgaaattgttca 228  Q
    ||||| ||||||||| ||||||| ||| |||| ||||||||||||||||| |||||| ||||    
T  23424314 agcagatttctgcctagtaggggaacttctgataactcaattgttttgcaggaaattattca 23424375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 149 - 229
Target Start/End: Complemental strand, 26433047 - 26432967
Alignment:
Q  149 attattggtccctattagagcagctttctgcctggtaggggcactactgacaactcaattgttttgcatgaaattgttcat 229  Q
    |||||||| |||||| | ||||| || |||||||||||||| ||  | || ||||| ||||||||||| |||||| |||||    
T  26433047 attattggcccctatcaaagcagtttcctgcctggtaggggtaccgcagataactctattgttttgcaggaaatttttcat 26432967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 189; Significance: 1e-102; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 1 - 229
Target Start/End: Complemental strand, 16770464 - 16770236
Alignment:
Q  1 tggaatttctgacaccctcgttgctctcattcctaaaaccgaccctcccaatacctacaaagactttagacccatcaacctttgcaatgttgtttacaag 100  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  16770464 tggaatttctgacaccctcgttgctctcattcctaaaaccgaccttcccaatacctacaaagactttagacccatcagcctttgcaatgttgtttacaag 16770365  T
Q  101 cttatcaccaaagtcttggttcaccgtctcaggccgctccttaatattattattggtccctattagagcagctttctgcctggtaggggcactactgaca 200  Q
    ||||||||||||||||||||| |||||||||| || ||||||||||||||||||||||| ||| ||||||| ||||||||||||||||||||||||||||    
T  16770364 cttatcaccaaagtcttggttaaccgtctcagaccactccttaatattattattggtccttatcagagcagttttctgcctggtaggggcactactgaca 16770265  T
Q  201 actcaattgttttgcatgaaattgttcat 229  Q
    |||||||||||||||| |||||| |||||    
T  16770264 actcaattgttttgcaggaaatttttcat 16770236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 148 - 214
Target Start/End: Complemental strand, 1579515 - 1579449
Alignment:
Q  148 tattattggtccctattagagcagctttctgcctggtaggggcactactgacaactcaattgttttg 214  Q
    |||||||||||||||| | ||||| ||||||||| |||||||| |||||||||||||||||||||||    
T  1579515 tattattggtccctatcaaagcagttttctgcctagtaggggcgctactgacaactcaattgttttg 1579449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 140 - 225
Target Start/End: Complemental strand, 27781994 - 27781909
Alignment:
Q  140 cttaatattattattggtccctattagagcagctttctgcctggtaggggcactactgacaactcaattgttttgcatgaaattgt 225  Q
    ||||||| |||||| ||||||||| | |||||||| ||||| |||||||||||  |||||||||| ||||||||| | ||||||||    
T  27781994 cttaataatattataggtccctatcaaagcagcttcctgccaggtaggggcacggctgacaactctattgttttgtaggaaattgt 27781909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 13 - 228
Target Start/End: Complemental strand, 23208357 - 23208142
Alignment:
Q  13 caccctcgttgctctcattcctaaaaccgaccctcccaatacctacaaagactttagacccatcaacctttgcaatgttgtttacaagcttatcaccaaa 112  Q
    ||||||| |||| ||||||||||||| |||||| ||||  || |||||||| |||||||||||||  || |||||  |    |||||| ||||||| |||    
T  23208357 caccctcattgcactcattcctaaaatcgacccccccaccacatacaaagattttagacccatcagtctctgcaacataacctacaagattatcactaaa 23208258  T
Q  113 gtcttggttcaccgtctcaggccgctccttaatattattattggtccctattagagcagctttctgcctggtaggggcactactgacaactcaattgttt 212  Q
    ||  | || || |||||||| ||  | || | || | ||||||| || |   | ||||| |||||||| |||||||| ||| ||||||||||||||||||    
T  23208257 gttcttgtgcatcgtctcagacctattctcagtaatcttattggcccttgccaaagcagttttctgccaggtaggggaacttctgacaactcaattgttt 23208158  T
Q  213 tgcatgaaattgttca 228  Q
    |||| |||||| ||||    
T  23208157 tgcaggaaattattca 23208142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 175; Significance: 2e-94; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 175; E-Value: 2e-94
Query Start/End: Original strand, 4 - 229
Target Start/End: Original strand, 23464990 - 23465216
Alignment:
Q  4 aatttctgacaccctcgttgctctcattcctaaaaccgaccctcccaatacctacaaagactttagacccatcaacctttgcaatgttgtttacaagctt 103  Q
    ||||| |||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  23464990 aatttttgacaccctcatttctctcattcctaaaaccgaccctcccaatacctacaaagactttagacccatcagcctttgcaatgttgtttacaagctt 23465089  T
Q  104 atcaccaaagtcttggttcaccgtctcaggccgctccttaatattattattggtccctattagagcagctttctgcctggtaggggcactactgacaact 203  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||    
T  23465090 atcaccaaagtcttggttcaccgtctcaggccgcttcttaatattattattggtccctatcagagcagttttctgcctggtaggggcactactgacaact 23465189  T
Q  204 ca-attgttttgcatgaaattgttcat 229  Q
    ||  || ||||| | ||||||||||||    
T  23465190 catttttttttggaggaaattgttcat 23465216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 53 - 229
Target Start/End: Complemental strand, 50237013 - 50236837
Alignment:
Q  53 acctacaaagactttagacccatcaacctttgcaatgttgtttacaagcttatcaccaaagtcttggttcaccgtctcaggccgctccttaatattatta 152  Q
    |||||||||||||||||  | |||| |||||| ||  |||| |||||| ||||||| ||||| ||||| || |||||  ||||  ||||||||| |||||    
T  50237013 acctacaaagactttaggtctatcagcctttgtaacattgtctacaagattatcactaaagttttggtgcatcgtcttcggcccatccttaataatatta 50236914  T
Q  153 ttggtccctattagagcagctttctgcctggtaggggcactactgacaactcaattgttttgcatgaaattgttcat 229  Q
    ||||||||||| | ||||  ||||||||||||||||| ||  |||| ||||| ||||||||||| ||||||||||||    
T  50236913 ttggtccctatcaaagcatttttctgcctggtaggggtacatctgataactcgattgttttgcaggaaattgttcat 50236837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 21 - 229
Target Start/End: Original strand, 50451565 - 50451773
Alignment:
Q  21 ttgctctcattcctaaaaccgaccctcccaatacctacaaagactttagacccatcaacctttgcaatgttgtttacaagcttatcaccaaagtcttggt 120  Q
    |||| |||||||| ||||| ||||| |||| |||||  |||||||||||||| |||| |||||||||| |  | |||||| ||||||| |||||| | ||    
T  50451565 ttgcactcattcccaaaactgacccccccactacctttaaagactttagacctatcagcctttgcaatataatctacaagattatcactaaagtccttgt 50451664  T
Q  121 tcaccgtctcaggccgctccttaatattattattggtccctattagagcagctttctgcctggtaggggcactactgacaactcaattgttttgcatgaa 220  Q
     || ||||| || ||  | || |||| | ||||||| || ||  | ||||||||||||||| ||||||| ||| |||| ||||| ||||||||||| |||    
T  50451665 gcatcgtcttagacctatactcaataatcttattggcccttaccaaagcagctttctgcctagtaggggaacttctgataactctattgttttgcaggaa 50451764  T
Q  221 attgttcat 229  Q
    ||| |||||    
T  50451765 attattcat 50451773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 149 - 229
Target Start/End: Original strand, 20284647 - 20284727
Alignment:
Q  149 attattggtccctattagagcagctttctgcctggtaggggcactactgacaactcaattgttttgcatgaaattgttcat 229  Q
    ||||||||||||||| | ||||||||||||||||||||||||||| | || ||||| ||||||||||| |||||| |||||    
T  20284647 attattggtccctatcaaagcagctttctgcctggtaggggcactgcagataactctattgttttgcaggaaattattcat 20284727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 56 - 225
Target Start/End: Original strand, 1524672 - 1524841
Alignment:
Q  56 tacaaagactttagacccatcaacctttgcaatgttgtttacaagcttatcaccaaagtcttggttcaccgtctcaggccgctccttaatattattattg 155  Q
    |||||||| |||||||||||||   | |||||  ||||||| ||  ||||||||||||| |||||| |  | || || ||| | || |||| ||||||||    
T  1524672 tacaaagattttagacccatcagtatgtgcaacattgtttataaaattatcaccaaagttttggttaatagactgagaccgattctaaataatattattg 1524771  T
Q  156 gtccctattagagcagctttctgcctggtaggggcactactgacaactcaattgttttgcatgaaattgt 225  Q
    | |||||| | || || ||||||||||||||||| ||| |||| || || ||||||||||| ||||||||    
T  1524772 gcccctatcaaagtagttttctgcctggtaggggaacttctgataattctattgttttgcaggaaattgt 1524841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 122 - 225
Target Start/End: Complemental strand, 31325331 - 31325228
Alignment:
Q  122 caccgtctcaggccgctccttaatattattattggtccctattagagcagctttctgcctggtaggggcactactgacaactcaattgttttgcatgaaa 221  Q
    ||||| ||||||||  | || |||| ||||||||| |||||    ||||| ||||||||||||||||| ||| |||| ||||||||||||||||| ||||    
T  31325331 caccgcctcaggcctattctcaataatattattggcccctaccgaagcagttttctgcctggtaggggaacttctgataactcaattgttttgcaggaaa 31325232  T
Q  222 ttgt 225  Q
    ||||    
T  31325231 ttgt 31325228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 167 - 229
Target Start/End: Original strand, 43298174 - 43298236
Alignment:
Q  167 agcagctttctgcctggtaggggcactactgacaactcaattgttttgcatgaaattgttcat 229  Q
    ||||| ||||||||| ||||||| ||| |||| ||||||||||||||||| ||||| ||||||    
T  43298174 agcagttttctgcctagtaggggaacttctgataactcaattgttttgcaggaaatagttcat 43298236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 170 - 223
Target Start/End: Complemental strand, 10104011 - 10103958
Alignment:
Q  170 agctttctgcctggtaggggcactactgacaactcaattgttttgcatgaaatt 223  Q
    |||||||||||||||||||| ||  |||| ||||||||||||||||| ||||||    
T  10104011 agctttctgcctggtaggggaacggctgataactcaattgttttgcaggaaatt 10103958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 89; Significance: 5e-43; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 8 - 228
Target Start/End: Complemental strand, 7588122 - 7587902
Alignment:
Q  8 tctgacaccctcgttgctctcattcctaaaaccgaccctcccaatacctacaaagactttagacccatcaacctttgcaatgttgtttacaagcttatca 107  Q
    |||||||||||| |||| |||||||| ||||| ||||||||||  || |  ||||||||| ||||||| | |||||||||  |||| ||||| || ||||    
T  7588122 tctgacaccctcattgccctcattcccaaaactgaccctcccacaacatttaaagactttcgacccattagcctttgcaacattgtgtacaaactcatca 7588023  T
Q  108 ccaaagtcttggttcaccgtctcaggccgctccttaatattattattggtccctattagagcagctttctgcctggtaggggcactactgacaactcaat 207  Q
    ||||||||||||||||||||||||| ||| | |||||| |||||||||| |||||  | || || ||||| ||| ||||||| || |||||||| |||||    
T  7588022 ccaaagtcttggttcaccgtctcagaccgattcttaatgttattattggcccctaccaaagtagttttctacctcgtaggggaacaactgacaattcaat 7587923  T
Q  208 tgttttgcatgaaattgttca 228  Q
    ||||||||| |||||||||||    
T  7587922 tgttttgcaggaaattgttca 7587902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 148 - 222
Target Start/End: Original strand, 48847968 - 48848042
Alignment:
Q  148 tattattggtccctattagagcagctttctgcctggtaggggcactactgacaactcaattgttttgcatgaaat 222  Q
    ||||||||||| |||| | ||||| |||||| ||||||||||||||||||||||| ||||||||||||| |||||    
T  48847968 tattattggtctctatcaaagcagttttctgtctggtaggggcactactgacaacacaattgttttgcaggaaat 48848042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 11 - 228
Target Start/End: Complemental strand, 46784965 - 46784749
Alignment:
Q  11 gacaccctcgttgctctcattcctaaaaccgaccctcccaatacctacaaagactttagacccatcaacctttgcaatgttgtttacaagcttatcacca 110  Q
    ||||| ||| |||| ||||| |||||||  || || || || |||||||||||||||||||| |||| |||||||||  |    |||||  | |||||||    
T  46784965 gacactctcattgccctcatccctaaaattgatccacctaaaacctacaaagactttagacctatcagcctttgcaacataacctacaaaatcatcacca 46784866  T
Q  111 aagtcttggttcaccgtctcaggccgctccttaatattattattggtccctattagagcagctttctgcctggtaggggcactactgacaactcaattgt 210  Q
    ||||| | ||  |||| ||||| ||| | || |||| |||||||||||||||  | || || ||||| || |||| ||||||  |||||||||| |||||    
T  46784865 aagtccttgtcaaccgcctcag-ccgattctcaataatattattggtccctaccaaagtagttttctaccaggtaagggcacctctgacaactctattgt 46784767  T
Q  211 tttgcatgaaattgttca 228  Q
    |||||| |||||||||||    
T  46784766 tttgcaggaaattgttca 46784749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 12 - 213
Target Start/End: Complemental strand, 54477897 - 54477696
Alignment:
Q  12 acaccctcgttgctctcattcctaaaaccgaccctcccaatacctacaaagactttagacccatcaacctttgcaatgttgtttacaagcttatcaccaa 111  Q
    |||| ||| |||| |||||||||| ||  ||||| |||| ||| || |||||||| |||||||||| |||||| ||| |  | |||||  ||||||| ||    
T  54477897 acactctcattgcactcattcctataattgacccacccactacttataaagacttcagacccatcagcctttgtaatatcatctacaaaattatcacaaa 54477798  T
Q  112 agtcttggttcaccgtctcaggccgctccttaatattattattggtccctattagagcagctttctgcctggtaggggcactactgacaactcaattgtt 211  Q
     || ||||||||||| || |||||  | |||| ||  |||||||| ||||   | ||||| ||||||||||| ||||||||| | || ||||| ||||||    
T  54477797 ggttttggttcaccgactaaggcctattcttactaacattattggcccctgccaaagcagttttctgcctggaaggggcacttcagataactctattgtt 54477698  T
Q  212 tt 213  Q
    ||    
T  54477697 tt 54477696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 110 - 229
Target Start/End: Original strand, 33803734 - 33803853
Alignment:
Q  110 aaagtcttggttcaccgtctcaggccgctccttaatattattattggtccctattagagcagctttctgcctggtaggggcactactgacaactcaattg 209  Q
    ||||| ||||| || |||||||| ||  | ||||||| |||||| || || ||  | ||||||||||||||||||||||| ||| |||| || || ||||    
T  33803734 aaagttttggtccagcgtctcagacctattcttaataatattataggcccttaccaaagcagctttctgcctggtaggggaacttctgataattccattg 33803833  T
Q  210 ttttgcatgaaattgttcat 229  Q
    ||||||| |||||| |||||    
T  33803834 ttttgcaggaaattattcat 33803853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 167 - 229
Target Start/End: Original strand, 3881528 - 3881590
Alignment:
Q  167 agcagctttctgcctggtaggggcactactgacaactcaattgttttgcatgaaattgttcat 229  Q
    ||||| ||||||||||||||||| ||| |||| ||||| ||||||||||| |||||| |||||    
T  3881528 agcagttttctgcctggtaggggaacttctgataactctattgttttgcaggaaattattcat 3881590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 67; Significance: 7e-30; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 8 - 222
Target Start/End: Original strand, 39012184 - 39012398
Alignment:
Q  8 tctgacaccctcgttgctctcattcctaaaaccgaccctcccaatacctacaaagactttagacccatcaacctttgcaatgttgtttacaagcttatca 107  Q
    ||||| |||||| || | |||||||| || |||||||| ||||  || |  ||||||||||||||||| | ||| |||||| ||| |||||| || ||||    
T  39012184 tctgataccctcatttccctcattcccaagaccgacccccccagcacttttaaagactttagacccattagcctctgcaatattgcttacaaactcatca 39012283  T
Q  108 ccaaagtcttggttcaccgtctcaggccgctccttaatattattattggtccctattagagcagctttctgcctggtaggggcactactgacaactcaat 207  Q
    | ||||||||||||||||| ||||| ||  | |||||| |||| ||||| |||||| | || || ||||| |||||||||||||| |||||||| || ||    
T  39012284 ctaaagtcttggttcaccgcctcagaccaattcttaatgttatcattggcccctatcaaagtagttttctacctggtaggggcaccactgacaattcgat 39012383  T
Q  208 tgttttgcatgaaat 222  Q
    ||||||||| |||||    
T  39012384 tgttttgcaggaaat 39012398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 107 - 229
Target Start/End: Original strand, 177252 - 177374
Alignment:
Q  107 accaaagtcttggttcaccgtctcaggccgctccttaatattattattggtccctattagagcagctttctgcctggtaggggcactactgacaactcaa 206  Q
    ||||||||| | || || |||||| ||||| | ||||||  |||||||||||||||  | ||||| || ||||  |||||||||||| |||||||||| |    
T  177252 accaaagtcattgtgcatcgtctccggccgattcttaatgatattattggtccctaccaaagcagtttcctgcaaggtaggggcacttctgacaactcta 177351  T
Q  207 ttgttttgcatgaaattgttcat 229  Q
    |||||||||| ||||||||||||    
T  177352 ttgttttgcaggaaattgttcat 177374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 149 - 229
Target Start/End: Complemental strand, 14654029 - 14653949
Alignment:
Q  149 attattggtccctattagagcagctttctgcctggtaggggcactactgacaactcaattgttttgcatgaaattgttcat 229  Q
    ||||||||||||||| | ||||| ||||||||||||||||||||| | || ||||| ||||||||||| |||||| |||||    
T  14654029 attattggtccctatcaaagcagttttctgcctggtaggggcactgcagataactctattgttttgcaggaaattattcat 14653949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 56 - 223
Target Start/End: Original strand, 16322151 - 16322318
Alignment:
Q  56 tacaaagactttagacccatcaacctttgcaatgttgtttacaagcttatcaccaaagtcttggttcaccgtctcaggccgctccttaatattattattg 155  Q
    |||||||| || |||||||||| ||| ||||||    |||||||  | |||||||| || || || || || || |||||  |||| |||| | ||||||    
T  16322151 tacaaagatttcagacccatcagcctatgcaatacactttacaaaatcatcaccaaggttttagtgcatcgccttaggcctttcctcaataatcttattg 16322250  T
Q  156 gtccctattagagcagctttctgcctggtaggggcactactgacaactcaattgttttgcatgaaatt 223  Q
    | |||||| | || |||||||| ||||||||||| ||| |||||||||||||| ||||||| ||||||    
T  16322251 gcccctatcaaagtagctttctacctggtaggggtactgctgacaactcaattattttgcaggaaatt 16322318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 167 - 229
Target Start/End: Original strand, 573005 - 573067
Alignment:
Q  167 agcagctttctgcctggtaggggcactactgacaactcaattgttttgcatgaaattgttcat 229  Q
    ||||| ||||||| ||||||||  ||| |||| ||||||||||||||||| ||||||||||||    
T  573005 agcagttttctgcatggtagggaaacttctgataactcaattgttttgcaggaaattgttcat 573067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 53 - 216
Target Start/End: Original strand, 26791020 - 26791183
Alignment:
Q  53 acctacaaagactttagacccatcaacctttgcaatgttgtttacaagcttatcaccaaagtcttggttcaccgtctcaggccgctccttaatattatta 152  Q
    ||||| ||||||||||||||||| | |||||| ||  |  | |||||  ||||||| |||||| | || || || ||||| ||  ||||||||| |||||    
T  26791020 acctataaagactttagacccattagcctttgtaacatcatctacaaaattatcactaaagtccttgtccatcgcctcagacctatccttaataatatta 26791119  T
Q  153 ttggtccctattagagcagctttctgcctggtaggggcactactgacaactcaattgttttgca 216  Q
    ||||||| ||  | || || || |||||||||||| |||| ||||||||  | |||||||||||    
T  26791120 ttggtccttaccaaagtagtttcctgcctggtaggagcaccactgacaatgccattgttttgca 26791183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 12 - 222
Target Start/End: Complemental strand, 35135708 - 35135498
Alignment:
Q  12 acaccctcgttgctctcattcctaaaaccgaccctcccaatacctacaaagactttagacccatcaacctttgcaatgttgtttacaagcttatcaccaa 111  Q
    |||| ||| |||| |||||||| ||||  || || |||| ||| |||||||| || | |||||| | |||||||||  || |||||||  ||||||| ||    
T  35135708 acactctcattgcgctcattccaaaaattgaaccacccactacttacaaagatttcatacccattagcctttgcaacattatttacaaaattatcacaaa 35135609  T
Q  112 agtcttggttcaccgtctcaggccgctccttaatattattattggtccctattagagcagctttctgcctggtaggggcactactgacaactcaattgtt 211  Q
     || |||||||| || || |||||  | || | ||  |||||| |||||||  | ||||| ||| ||||||||||||| ||  | |||||||| ||||||    
T  35135608 ggtattggttcatcggctaaggcctattctcactaacattattagtccctaccaaagcagttttttgcctggtaggggtacctcagacaactccattgtt 35135509  T
Q  212 ttgcatgaaat 222  Q
    ||||| |||||    
T  35135508 ttgcaggaaat 35135498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 12 - 222
Target Start/End: Original strand, 40327836 - 40328046
Alignment:
Q  12 acaccctcgttgctctcattcctaaaaccgaccctcccaatacctacaaagactttagacccatcaacctttgcaatgttgtttacaagcttatcaccaa 111  Q
    |||| ||| |||| |||||||| ||||  || || |||| ||| |||||||| || |||||||| | |||||||||  || |||||||  ||||||| ||    
T  40327836 acactctcattgcgctcattccaaaaattgaaccacccactacttacaaagatttcagacccattagcctttgcaacattatttacaaaattatcacaaa 40327935  T
Q  112 agtcttggttcaccgtctcaggccgctccttaatattattattggtccctattagagcagctttctgcctggtaggggcactactgacaactcaattgtt 211  Q
     || |||||||| || || |||||  | || | ||  ||||||||||||||  | || || ||| | ||||||||||| ||  | |||||||| ||||||    
T  40327936 ggtattggttcatcggctaaggcctattctcactaacattattggtccctaccaaagtagtttttttcctggtaggggtacctcagacaactccattgtt 40328035  T
Q  212 ttgcatgaaat 222  Q
    ||||| |||||    
T  40328036 ttgcaggaaat 40328046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 137 - 223
Target Start/End: Complemental strand, 42403581 - 42403495
Alignment:
Q  137 ctccttaatattattattggtccctattagagcagctttctgcctggtaggggcactactgacaactcaattgttttgcatgaaatt 223  Q
    |||||||||| ||||||||| ||||   | || || ||||| ||||||||||| ||| |||| || |||||||||||||| ||||||    
T  42403581 ctccttaataatattattggcccctgccaaagtagttttctacctggtaggggtacttctgataattcaattgttttgcaggaaatt 42403495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 66; Significance: 3e-29; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 44 - 225
Target Start/End: Original strand, 13599277 - 13599458
Alignment:
Q  44 cctcccaatacctacaaagactttagacccatcaacctttgcaatgttgtttacaagcttatcaccaaagtcttggttcaccgtctcaggccgctcctta 143  Q
    ||||| || |||||||||||| ||||||| |||| ||| || ||  |||| |||||||||||||||||||||||||||||||||||||  ||  | ||||    
T  13599277 cctccaaacacctacaaagacgttagacctatcagcctgtgtaacattgtatacaagcttatcaccaaagtcttggttcaccgtctcatacccattctta 13599376  T
Q  144 atattattattggtccctattagagcagctttctgcctggtaggggcactactgacaactcaattgttttgcatgaaattgt 225  Q
    || |||||||||| |||||| | || |  ||||  |||| || |||||| |||||||| |||||||||||||| ||||||||    
T  13599377 atgttattattggcccctatcaaagtatttttcaacctgataagggcaccactgacaattcaattgttttgcaggaaattgt 13599458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 60 - 228
Target Start/End: Original strand, 35233195 - 35233363
Alignment:
Q  60 aagactttagacccatcaacctttgcaatgttgtttacaagcttatcaccaaagtcttggttcaccgtctcaggccgctccttaatattattattggtcc 159  Q
    ||||||| ||||| |||| ||| |||||  | || ||||||||  | || ||||||||||||||||||||||| ||| || | |||| ||||||||| ||    
T  35233195 aagacttcagaccaatcagcctgtgcaacatagtgtacaagctccttactaaagtcttggttcaccgtctcagaccgatcttaaataatattattggccc 35233294  T
Q  160 ctattagagcagctttctgcctggtaggggcactactgacaactcaattgttttgcatgaaattgttca 228  Q
    |||| | ||||| |||||| |||||||||||||  |||||||||||||||||||| | |||||||||||    
T  35233295 ctatcaaagcagttttctgtctggtaggggcacctctgacaactcaattgttttgaaggaaattgttca 35233363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 21 - 222
Target Start/End: Complemental strand, 11297282 - 11297081
Alignment:
Q  21 ttgctctcattcctaaaaccgaccctcccaatacctacaaagactttagacccatcaacctttgcaatgttgtttacaagcttatcaccaaagtcttggt 120  Q
    |||| |||||||| ||||  || ||||| | ||| |||||||| |||||||||||||  || |||||  |  | |||||  ||||||| ||||| |||||    
T  11297282 ttgcactcattccaaaaattgatcctcctagtacatacaaagattttagacccatcagtctctgcaacataatctacaaaattatcacaaaagttttggt 11297183  T
Q  121 tcaccgtctcaggccgctccttaatattattattggtccctattagagcagctttctgcctggtaggggcactactgacaactcaattgttttgcatgaa 220  Q
     || |||||||| ||  | |||| || |||||||||| ||||| | ||||| |||||||||||||| || ||| |||| ||||||||||||||||| |||    
T  11297182 gcatcgtctcagacctattcttactaatattattggttcctatcaaagcagttttctgcctggtagtggtacttctgataactcaattgttttgcacgaa 11297083  T
Q  221 at 222  Q
    ||    
T  11297082 at 11297081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 167 - 228
Target Start/End: Complemental strand, 24894173 - 24894112
Alignment:
Q  167 agcagctttctgcctggtaggggcactactgacaactcaattgttttgcatgaaattgttca 228  Q
    ||||||||||||||||||||||| ||| |||| ||||||||||||||||| |||||| ||||    
T  24894173 agcagctttctgcctggtaggggaacttctgataactcaattgttttgcaggaaattattca 24894112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 83 - 222
Target Start/End: Complemental strand, 13027833 - 13027694
Alignment:
Q  83 tgcaatgttgtttacaagcttatcaccaaagtcttggttcaccgtctcaggccgctccttaatattattattggtccctattagagcagctttctgcctg 182  Q
    |||||| ||| |||||| || ||||| |||||||||||||||   ||||| ||  | |||||| |||| ||||| |||||| | || || ||||| ||||    
T  13027833 tgcaatattgcttacaaactcatcactaaagtcttggttcacaacctcagaccaattcttaatgttatcattggcccctatcaaagtagttttctacctg 13027734  T
Q  183 gtaggggcactactgacaactcaattgttttgcatgaaat 222  Q
    |||||||||| | |||||| || |||||||| || |||||    
T  13027733 gtaggggcaccattgacaattcgattgttttacaggaaat 13027694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 64; Significance: 4e-28; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 8 - 228
Target Start/End: Complemental strand, 26709203 - 26708979
Alignment:
Q  8 tctgacaccctcgttgctctcattcctaaaaccgaccctccc----aatacctacaaagactttagacccatcaacctttgcaatgttgtttacaagctt 103  Q
    |||||||| ||| |||| |||||||| ||||||||||| |||    || || |  ||||||||||||||||| | | |||||||  |||| ||||||||     
T  26709203 tctgacacactcattgccctcattcccaaaaccgacccccccccccaacacatttaaagactttagacccattatcatttgcaacattgtgtacaagctc 26709104  T
Q  104 atcaccaaagtcttggttcaccgtctcaggccgctccttaatattattattggtccctattagagcagctttctgcctggtaggggcactactgacaact 203  Q
    ||||||||||||||||||||||||||||| ||| | || ||| |||||||||| |||||  | || || |||||  |||||||||| || |||||| | |    
T  26709103 atcaccaaagtcttggttcaccgtctcagaccgttactcaatgttattattggcccctaccaaagtagttttctaactggtaggggaacaactgactatt 26709004  T
Q  204 caattgttttgcatgaaattgttca 228  Q
    ||||||||||  | |||||||||||    
T  26709003 caattgttttataggaaattgttca 26708979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 149 - 229
Target Start/End: Complemental strand, 23132934 - 23132854
Alignment:
Q  149 attattggtccctattagagcagctttctgcctggtaggggcactactgacaactcaattgttttgcatgaaattgttcat 229  Q
    ||||||||||||||| | ||||||||||||| ||||||||||||| | || ||||| ||||||||||| |||||| |||||    
T  23132934 attattggtccctatcaaagcagctttctgcttggtaggggcactgcagataactctattgttttgcaggaaattattcat 23132854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 90 - 230
Target Start/End: Original strand, 38348206 - 38348346
Alignment:
Q  90 ttgtttacaagcttatcaccaaagtcttggttcaccgtctcaggccgctccttaatattattattggtccctattagagcagctttctgcctggtagggg 189  Q
    ||||||||||  |||||||| |||| ||||||||| |  | || ||| | ||||||| ||||||||| |||||| | |||||||| ||||||||||||||    
T  38348206 ttgtttacaaaattatcacctaagttttggttcacagattgagaccgattcttaataatattattggcccctatcaaagcagcttcctgcctggtagggg 38348305  T
Q  190 cactactgacaactcaattgttttgcatgaaattgttcatc 230  Q
     ||| |||| || || ||| ||||||| |||||||| ||||    
T  38348306 aacttctgataattctattattttgcaggaaattgtccatc 38348346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 59 - 222
Target Start/End: Original strand, 14759630 - 14759793
Alignment:
Q  59 aaagactttagacccatcaacctttgcaatgttgtttacaagcttatcaccaaagtcttggttcaccgtctcaggccgctccttaatattattattggtc 158  Q
    |||||||| |||||||| | |||||| ||| || |||||||  | ||||| || ||  |||||||||| || |||||  | |||| || ||||||||| |    
T  14759630 aaagacttcagacccattagcctttgtaatattatttacaaaatcatcactaaggtgctggttcaccggctaaggcccattcttactaatattattggcc 14759729  T
Q  159 cctattagagcagctttctgcctggtaggggcactactgacaactcaattgttttgcatgaaat 222  Q
    ||||  | ||||| ||||||||||| ||||||||| |||| ||||| ||||||||||| |||||    
T  14759730 cctaccaaagcagttttctgcctgggaggggcacttctgataactccattgttttgcaggaaat 14759793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 104 - 224
Target Start/End: Original strand, 26586977 - 26587097
Alignment:
Q  104 atcaccaaagtcttggttcaccgtctcaggccgctccttaatattattattggtccctattagagcagctttctgcctggtaggggcactactgacaact 203  Q
    |||||||||||| | || || || ||||| ||| ||||||| | |||||||||||||||  | | ||| |||||||| ||||||||||||  ||||||||    
T  26586977 atcaccaaagtccttgtccatcgcctcagaccgatccttaacaatattattggtccctaccaaatcagttttctgccaggtaggggcacttatgacaact 26587076  T
Q  204 caattgttttgcatgaaattg 224  Q
    |  |||||||||| |||||||    
T  26587077 cttttgttttgcaggaaattg 26587097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 59 - 222
Target Start/End: Original strand, 26973161 - 26973324
Alignment:
Q  59 aaagactttagacccatcaacctttgcaatgttgtttacaagcttatcaccaaagtcttggttcaccgtctcaggccgctccttaatattattattggtc 158  Q
    |||||||| || ||||| | |||||| ||| || |||||||  | ||||| || || ||||||||||| || |||||  | |||| || ||||||||| |    
T  26973161 aaagacttcaggcccattagcctttgtaatattatttacaaaatcatcactaaggtgttggttcaccggctaaggcccattcttactaatattattggcc 26973260  T
Q  159 cctattagagcagctttctgcctggtaggggcactactgacaactcaattgttttgcatgaaat 222  Q
    ||||  | ||||| ||||||||||| ||||||||  |||| ||||| ||||||||||| |||||    
T  26973261 cctaccaaagcagttttctgcctgggaggggcacctctgataactccattgttttgcaggaaat 26973324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 45; Significance: 9e-17; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 52 - 216
Target Start/End: Original strand, 31814343 - 31814507
Alignment:
Q  52 tacctacaaagactttagacccatcaacctttgcaatgttgtttacaagcttatcaccaaagtcttggttcaccgtctcaggccgctccttaatattatt 151  Q
    |||||||||||| ||||| || ||||||||||| ||  |  |||| ||  |||||||||||||| | |||||||| ||||| ||  ||||| ||||||||    
T  31814343 tacctacaaagattttaggccaatcaacctttgtaacatcatttataaaattatcaccaaagtccttgttcaccgcctcagacccatccttgatattatt 31814442  T
Q  152 attggtccctattagagcagctttctgcctggtaggggcactactgacaactcaattgttttgca 216  Q
    ||||||| |||| | | ||| ||| |||||||||||||||| ||| | ||  | |||||||||||    
T  31814443 attggtctctatcaaatcagttttttgcctggtaggggcacaactaaaaatgccattgttttgca 31814507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 56 - 225
Target Start/End: Complemental strand, 6641461 - 6641292
Alignment:
Q  56 tacaaagactttagacccatcaacctttgcaatgttgtttacaagcttatcaccaaagtcttggttcaccgtctcaggccgctccttaatattattattg 155  Q
    |||||||| || ||||||||||  ||||||||| | ||||||||  | ||| | || || || || || || || ||||| || ||||||| ||||||||    
T  6641461 tacaaagatttcagacccatcagtctttgcaatatagtttacaaaatcatcgctaaggttttagtacatcgcctaaggccccttcttaataatattattg 6641362  T
Q  156 gtccctattagagcagctttctgcctggtaggggcactactgacaactcaattgttttgcatgaaattgt 225  Q
    | |||||| | || || ||||| ||| |||||||||||  ||| ||||||||| ||||||| ||||||||    
T  6641361 gcccctatcaaagtagttttctacctcgtaggggcacttatgataactcaattattttgcaggaaattgt 6641292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 110 - 229
Target Start/End: Original strand, 23944774 - 23944893
Alignment:
Q  110 aaagtcttggttcaccgtctcaggccgctccttaatattattattggtccctattagagcagctttctgcctggtaggggcactactgacaactcaattg 209  Q
    ||||| ||||| || |||||||| ||  | ||||||| |||||| || || ||  | ||||||||||||||||||||||| ||| |||| || || ||||    
T  23944774 aaagttttggtccagcgtctcagacctattcttaataatattataggcccttaccaaagcagctttctgcctggtaggggaacttctgataattccattg 23944873  T
Q  210 ttttgcatgaaattgttcat 229  Q
    ||||||| |||||| |||||    
T  23944874 ttttgcaggaaattattcat 23944893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 138 - 225
Target Start/End: Complemental strand, 23620984 - 23620897
Alignment:
Q  138 tccttaatattattattggtccctattagagcagctttctgcctggtaggggcactactgacaactcaattgttttgcatgaaattgt 225  Q
    ||||| ||| |||||||||||||||  | ||| | |||||||  ||||| ||||||  ||||||||| ||||||||||| ||||||||    
T  23620984 tccttgatactattattggtccctaccaaagcggttttctgcaaggtagaggcacttttgacaactctattgttttgcaggaaattgt 23620897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 58 - 223
Target Start/End: Original strand, 7816839 - 7817004
Alignment:
Q  58 caaagactttagacccatcaacctttgcaatgttgtttacaagcttatcaccaaagtcttggttcaccgtctcaggccgctccttaatattattattggt 157  Q
    |||||| || ||||||||||| || |||||| || | |||||  | ||||| || || ||||| ||||| || |||||  | |||| ||  ||||||||     
T  7816839 caaagatttcagacccatcaatctctgcaatattatctacaaaataatcactaaggttttggtccaccgactaaggcctattcttactaacattattggc 7816938  T
Q  158 ccctattagagcagctttctgcctggtaggggcactactgacaactcaattgttttgcatgaaatt 223  Q
    || ||  | ||||| ||||||||||||||||| ||| | || ||||| ||||||||||| ||||||    
T  7816939 ccttaccaaagcagttttctgcctggtaggggtacttcagataactctattgttttgcaggaaatt 7817004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0214 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0214
Description:

Target: scaffold0214; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 53 - 228
Target Start/End: Original strand, 8666 - 8841
Alignment:
Q  53 acctacaaagactttagacccatcaacctttgcaatgttgtttacaagcttatcaccaaagtcttggttcaccgtctcaggccgctccttaatattatta 152  Q
    |||| |||||||||||||||||| | |||||| ||  |  | |||||  ||||||| || ||  | || ||||| ||||| ||  ||||||||  |||||    
T  8666 accttcaaagactttagacccattagcctttgtaacatcatctacaaaattatcactaaggttcttgtccaccgcctcagacctatccttaatgatatta 8765  T
Q  153 ttggtccctattagagcagctttctgcctggtaggggcactactgacaactcaattgttttgcatgaaattgttca 228  Q
    ||||||| ||  | ||||| || ||||||||||||||||| ||||||||  | ||||||||||| |||||| ||||    
T  8766 ttggtccttaccaaagcagtttcctgcctggtaggggcaccactgacaatgccattgttttgcaggaaattattca 8841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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