View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3884_low_2 (Length: 819)
Name: NF3884_low_2
Description: NF3884
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3884_low_2 |
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Alignment Details
Target: chr1 (Bit Score: 531; Significance: 0; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 531; E-Value: 0
Query Start/End: Original strand, 11 - 561
Target Start/End: Original strand, 42004125 - 42004675
Alignment:
| Q |
11 |
cacagatagtaaaaattttgtgtgacaaaactaaaatgaatttaacgtaatggaagatcattgagagcataggaaagtacctgttgacttaatcgaatgt |
110 |
Q |
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| T |
42004125 |
cacagatagtaaaaattttgtgtgacaaaactaaaatgagtttaacataatggaagatcattgagagcataggaaagtacctgttgacttaatcgaatgt |
42004224 |
T |
|
| Q |
111 |
cggaagattctgagtcaagctgtacattgccagtgtggtcaagattttggcactcttccttgtctttcttcaactgctctggtcctagatgagcatatgc |
210 |
Q |
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| T |
42004225 |
cggaagattctgagtcaagctgtacattgccagtgtggtcaagattttggcactcttccttgtctttcttcaactgctctggtcctagatgagcatatgc |
42004324 |
T |
|
| Q |
211 |
cgaaagactaggctggttcttttgttcgtcattttccctgtgtcttttcggagactggctttgaatgaaatcttcgaaccaagaaaatgtttcgggaagt |
310 |
Q |
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| T |
42004325 |
cgaaagactaggctggttcttttgttcgtcattttccctgtgtcttttcggagactggctttgaatgaaatcttcgaaccaagaaaatgtttcgggaagt |
42004424 |
T |
|
| Q |
311 |
tgctatgaatccaatagattcagcggcaggtcaatgttatccatctcttcacagtcatcctgactattaagtagccattcttctaaccaaggaagatttt |
410 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
42004425 |
tgctgtgaatccaatagattcagcggcaggtcaatgttatccatctcttcacagtcatcctcactattaagtagccattcttctaaccaaggaagatttt |
42004524 |
T |
|
| Q |
411 |
caagaatctggtgtagaagacaaacaaaaggacaaaattatcaacttagattattttcatatttccacaaaccaaaactattaaaattaatctcataaga |
510 |
Q |
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| T |
42004525 |
caagaatctggtgtagaagacaaacaaaagaacaaaattatcaacttagattattttcatatttccacaaaccaaaactattaaaattaatctcataaga |
42004624 |
T |
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| Q |
511 |
atcttgaatcattcccattctgaattggtgttagaaaataatgaattaaga |
561 |
Q |
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| T |
42004625 |
atcttgaatcattcccattctgaattggtgttagaaaataatgaattaaga |
42004675 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 561 - 800
Target Start/End: Original strand, 42006554 - 42006793
Alignment:
| Q |
561 |
acataagctgcatgtggttgcaaacctctacaaaatggaggatctcaacgcaactgcaatttaaaaccatggtcttaaagacttcaccataacgataata |
660 |
Q |
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| T |
42006554 |
acataagctgcatgtggttgcaaacctctacaaaatggaggatctcaacgcaactgcaatttaaaaccatggtctttaagacttcaccataacgataata |
42006653 |
T |
|
| Q |
661 |
gcagtcacatgctacctaattgactataattgttcatcatcaatgaccacaatacaatcgtgaagcagttatagtttaaaactttgatctccttaaccgt |
760 |
Q |
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| T |
42006654 |
gcagtcacatgctacctaattgactataattgttcatcatcaatgaccacaatacaatcgtgaagcagtcatagtttaaaactttgatctccttaaccgt |
42006753 |
T |
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| Q |
761 |
atcacgattgcaattgtagccacacagcggcacataccta |
800 |
Q |
| |
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| T |
42006754 |
atcacgattgcaattgtagccacacagcggcacataccta |
42006793 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 51; E-Value: 9e-20
Query Start/End: Original strand, 149 - 351
Target Start/End: Original strand, 42013102 - 42013304
Alignment:
| Q |
149 |
tcaagattttggcactcttccttgtctttcttcaactgctctggtcctagatgagcatatgccgaaagactaggctggttcttttgttcgtcattttccc |
248 |
Q |
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| T |
42013102 |
tcaagattttgacactcttcaatatctttcttcaattgctctgctcctaaatgagcatatacggaaagactaggtcgttccatttgctctccgctttccc |
42013201 |
T |
|
| Q |
249 |
tgtgtcttttcggagactggctttgaatgaaatcttcgaaccaagaaaatgtttcgggaagttgctatgaatccaatagattcagcggcaggtcaatgtt |
348 |
Q |
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| T |
42013202 |
catcccttttcggagactggctctgaaagaaatctgcgaacaaggaaagtccttccgcaagttgctgtgaatccaataaattctgcgacaggtcaaagtt |
42013301 |
T |
|
| Q |
349 |
atc |
351 |
Q |
| |
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| T |
42013302 |
atc |
42013304 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 355 - 482
Target Start/End: Original strand, 42013476 - 42013600
Alignment:
| Q |
355 |
ctcttcacagtcatcctgactattaagtagccattcttctaaccaaggaagattttcaagaatctggtgtagaagacaaacaaaaggacaaaattatcaa |
454 |
Q |
| |
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||||||||| ||||||||||| | ||||||||||||| |||| || ||||||| |||||||| | ||||||||||||||||| ||||||| |||| |
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| T |
42013476 |
ctcttcacaatcatcctgactttcaagtagccattct---aaccgagaaagatttggtagaatctgttatagaagacaaacaaaagatcaaaattgtcaa |
42013572 |
T |
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| Q |
455 |
cttagattattttcatatttccacaaac |
482 |
Q |
| |
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| ||| |||| ||||||||||||||||| |
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| T |
42013573 |
cataggttatgttcatatttccacaaac |
42013600 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 42 - 138
Target Start/End: Original strand, 42012922 - 42013016
Alignment:
| Q |
42 |
taaaatgaatttaacgtaatggaagatcattgagagcataggaaagtacctgttgacttaatcgaatgtcggaagattctgagtcaagctgtacatt |
138 |
Q |
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|||||||||||||| ||| |||||| ||||||||| ||||||| |||| |||||||||||||||| ||||||| || ||||||||||| |||||| |
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| T |
42012922 |
taaaatgaatttaatgtattggaaggtcattgagaaaataggaa--taccagttgacttaatcgaatatcggaaggttgtgagtcaagctctacatt |
42013016 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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