View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3884_low_3 (Length: 636)
Name: NF3884_low_3
Description: NF3884
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3884_low_3 |
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Alignment Details
Target: chr1 (Bit Score: 527; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 527; E-Value: 0
Query Start/End: Original strand, 16 - 620
Target Start/End: Original strand, 6802336 - 6802941
Alignment:
| Q |
16 |
atataacacgtaacattattcaaaatataacgtctagagttaacacttatttttcataaaaa-cataattcacatagaatccaaataaaatgcatatgac |
114 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||| |||| ||||||||||||||||||||||| |
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| T |
6802336 |
atataacacgtaacattattcaaaatataacgtcaagagttaacacttatttttcataaaaaacataattc-cataaaatccaaataaaatgcatatgac |
6802434 |
T |
|
| Q |
115 |
aggagagaacccattcaatcaatattaagaaaacgagagccacaagaccaaccatctgtccaattcaacaaaaccaaaaagtagaataagtgcctaatgc |
214 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||| || ||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
6802435 |
tggagagaacccattcaatcaatattaagaaaacgagggccacaagaccgactatctgtccaattcaacaaaaccaaaaagtagaataagtgcctactgc |
6802534 |
T |
|
| Q |
215 |
ttatcatgaaaagaatctattgaaaggtatgtcttccgacattattgcatcctcatcttcatctgaacgaggtgatggaagatctgtcgaaggaaggatg |
314 |
Q |
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||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||| ||||||||||||||| |
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| T |
6802535 |
ttatcatgaaaagaatccattgaaaggtatgtcttccgacattattgcatcctcatcttcatctgaacgaggtaatgaaagatccgtcgaaggaaggatg |
6802634 |
T |
|
| Q |
315 |
atcattgtaggggatggtcccacatgaacaataaactttattgaaggaag-gattgggcaaaatccctaaaaggttggaccttcctttcttgatctaatc |
413 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6802635 |
atcattgtaggggatggtcccacatgaacaataaactttattggaggaagcgattgggcaaaatccctaaaaggttggaccttcctttcttgatctaatc |
6802734 |
T |
|
| Q |
414 |
tctttatacaacgtaacaatgaatcatacttcgcaggagtggacataagatgacaagtagaagacttcgttctcttcttcataacataggtcatcttgga |
513 |
Q |
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| T |
6802735 |
tctttatacaacgtaacaatgaatcatacttcgcaggagtggacataagatgacaagtagaagacttcgttctcttcttcataacatgggtcatcttgga |
6802834 |
T |
|
| Q |
514 |
cctatcatatagcttgaaggcagacataccgaaacaatgacaaaaccaatcaaacatatttctctagaattgactgcatcaatcatgttcaaatgtcacg |
613 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6802835 |
tctatcatatagcttgaaggcagacataccgaaacaatgacaaaaccaatcaaacatatttctctagaattgactgcatcaatcatgttcaaatgtcacg |
6802934 |
T |
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| Q |
614 |
ttgtgtg |
620 |
Q |
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||||||| |
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| T |
6802935 |
ttgtgtg |
6802941 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 34; Significance: 0.0000000009; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 392 - 541
Target Start/End: Original strand, 46613860 - 46614009
Alignment:
| Q |
392 |
accttcctttcttgatctaatctctttatacaacgtaacaatgaatcatacttcgcaggagtggacataagatgacaagtagaagacttcgttctcttct |
491 |
Q |
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|||||| ||||||||| |||||||| ||||||| ||||| | || | |||| || || || ||||| ||||||||||| ||||||| || |||||| |
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| T |
46613860 |
accttcttttcttgatttaatctctctatacaatgtaacgacgagctcttcttctaagaagagggcataaaatgacaagtagcagacttcattatcttct |
46613959 |
T |
|
| Q |
492 |
tcataacataggtcatcttggacctatcatatagcttgaaggcagacata |
541 |
Q |
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| T |
46613960 |
tcataaccggggcaatcatggtcctatcatatagtttgaaggcaaacata |
46614009 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 388 - 432
Target Start/End: Original strand, 45299094 - 45299138
Alignment:
| Q |
388 |
ttggaccttcctttcttgatctaatctctttatacaacgtaacaa |
432 |
Q |
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||||||||||||||||||||||||| ||| |||| |||||||||| |
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| T |
45299094 |
ttggaccttcctttcttgatctaatttctctatagaacgtaacaa |
45299138 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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