View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3884_low_7 (Length: 399)
Name: NF3884_low_7
Description: NF3884
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3884_low_7 |
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Alignment Details
Target: chr2 (Bit Score: 322; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 322; E-Value: 0
Query Start/End: Original strand, 18 - 389
Target Start/End: Complemental strand, 41095521 - 41095150
Alignment:
| Q |
18 |
gatgtaatgccagaaactaggttgggtgcatccaacttggatgtattactagcattagtggcaacaacttaaacattattactagcatgagttaactatg |
117 |
Q |
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| T |
41095521 |
gatgtaatgccagaaactaggttgggtgcatccaacttggatgtattactagcattagtggcaacaacttaaacattattactagcatgagttaactatg |
41095422 |
T |
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| Q |
118 |
atttaacttgaagnnnnnnnatggataaattttctgtttgggatgttatgttatgaaagaaaattaattatcatcataatcataataatgaccatagtca |
217 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41095421 |
atttaacttgaagtttttttatggataaattttctgtttgggatgttatgttatgaaagaaaattaattatcatcataatcataataatgaccatagtca |
41095322 |
T |
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| Q |
218 |
gtcattctgctattacaaattcatccactgaacacaaaatacacatcttactnnnnnnnctaatccagagatctactgtgtgctacatttattagaaatc |
317 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
41095321 |
gtcattctgctattacaaattcatctactgaacacaaaatacacatcttactaaaaaaactaatccagagatctactgtgtgctacatttattagaaatc |
41095222 |
T |
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| Q |
318 |
ctacatagagatatcttgtcatatggaatgcaatgcttgtaactctcaaatagacaccataaaatatctgtg |
389 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
41095221 |
ctacatagagatatcttgtcatatggaatgcaatgcttgtaactctcaaataaacaccataaaatatctgtg |
41095150 |
T |
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