View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3884_low_8 (Length: 360)
Name: NF3884_low_8
Description: NF3884
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3884_low_8 |
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| [»] chr3 (3 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 322; Significance: 0; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 322; E-Value: 0
Query Start/End: Original strand, 7 - 360
Target Start/End: Original strand, 11753817 - 11754170
Alignment:
| Q |
7 |
agcagaacctgtggacacatatattggacgcagctctttagctaagtgtgcaaaaaagcacacctttcggtcacaactagtaccatctttgcagagaatt |
106 |
Q |
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| T |
11753817 |
agcagatccagtggagacatatattggacgcagctcttcagctaagtgtgcaaaaaagcacacctttcggtcacaactagtaccatctttgcagagaatt |
11753916 |
T |
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| Q |
107 |
gtgcgataccgatctgggtgtagccatgtctcgaatagtccatgagcaaattcacacatatctgcacgtttgcagtccccttttttaaaatcagggcatg |
206 |
Q |
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| T |
11753917 |
gtgcgataccgatctgggtgtagccatgtctcgaatagtccatgagcaaattcacacgtatctgcacgtttgcagtccccttttttaaaatcagggcatg |
11754016 |
T |
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| Q |
207 |
gcacacagctgtaggtgaactttctaaggtctctccttcgagcattctcatgaggatgtttaaaaggacactcgctccaatcatgagagtatgcacgagg |
306 |
Q |
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| T |
11754017 |
gtacacagctgtaggtgaactttctaaggtctctccttcgagcattctcatgaggatgtttaaaaggacactcggtccaatcatgagagtatgcacgagg |
11754116 |
T |
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| Q |
307 |
acaaagaagaaccttaaacgaatacatgcgaaattcatctgtggcgtacctgct |
360 |
Q |
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| T |
11754117 |
acaaagaagaaccttaaacgaatacatgcgaaattcatctgtggcgtacatgct |
11754170 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 31 - 351
Target Start/End: Original strand, 11688182 - 11688502
Alignment:
| Q |
31 |
tggacgcagctctttagctaagtgtgcaaaaaagcacacctttcggtcacaactagtaccatctttgcagagaattgtgcgataccgatctgggtgtagc |
130 |
Q |
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| T |
11688182 |
tggacgcagctcttcagcaacatgtgcaaaaaagcacacctttcggttacaattagtaccctctttgcagagccttgtgcgatactgatctggatgtagc |
11688281 |
T |
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| Q |
131 |
catgtctcgaatagtccatgagcaaattcacacatatctgcacgtttgcagtccccttttttaaaatcagggcatggcacacagctgtaggtgaactttc |
230 |
Q |
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| T |
11688282 |
caggtctcgaatactccatgagcatattcacacatatcaccacgtttgcaatccctagttttaaaatcagcgcatggcacacagctgtaggtgaactttc |
11688381 |
T |
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| Q |
231 |
taaggtctctccttcgagcattctcatgaggatgtttaaaaggacactcgctccaatcatgagagtatgcacgaggacaaagaagaaccttaaacgaata |
330 |
Q |
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| T |
11688382 |
tagggtctctccttcgtgcattctcattaggatggtaaaaaggacactcggtccaattatgagtgtatgcacgatgacaaagaaggaccttgaccgaata |
11688481 |
T |
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| Q |
331 |
catgcgaaattcatctgtggc |
351 |
Q |
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| T |
11688482 |
catgcgaaattcatctgtggc |
11688502 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 7 - 360
Target Start/End: Original strand, 9314540 - 9314893
Alignment:
| Q |
7 |
agcagaacctgtggacacatatattggacgcagctctttagctaagtgtgcaaaaaagcacacctttcggtcacaactagtaccatctttgcagagaatt |
106 |
Q |
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| T |
9314540 |
agcagaaccagtggacacatacagcggacgcagctcttcaggtgagtgagcgaagaagcacacccttcggttacaacccataccgtctttgcacagcctt |
9314639 |
T |
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| Q |
107 |
gtgcgataccgatctgggtgtagccatgtctcgaatagtccatgagcaaattcacacatatctgcacgtttgcagtccccttttttaaaatcagggcatg |
206 |
Q |
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| T |
9314640 |
gtccgatactgagctgggtgtagccagcactcgaatactccatgagcatattcacacatatccgaacgtcggcaagcccctttcctaaaatcagggcatg |
9314739 |
T |
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| Q |
207 |
gcacacagctgtaggtgaactttctaaggtctctccttcgagcattctcatgaggatgtttaaaaggacactcgctccaatcatgagagtatgcacgagg |
306 |
Q |
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| T |
9314740 |
gcacacagctgtagtgaaactttctagggtctctccttcgagcattctctccaggatgcacaaaaggacactcagtccaatcatgagagtatgcacgaga |
9314839 |
T |
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| Q |
307 |
acaaagaagaaccttaaacgaatacatgcgaaattcatctgtggcgtacctgct |
360 |
Q |
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| T |
9314840 |
acaaggacgaaccttgaatgaatacatgcggaattcatctgtggcatacatgct |
9314893 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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