View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3885_high_3 (Length: 344)
Name: NF3885_high_3
Description: NF3885
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3885_high_3 |
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Alignment Details
Target: chr3 (Bit Score: 298; Significance: 1e-167; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 298; E-Value: 1e-167
Query Start/End: Original strand, 13 - 328
Target Start/End: Original strand, 43128762 - 43129074
Alignment:
| Q |
13 |
aatatacatccacacgaatccaacatcataccttgatctcattaacaatttatccacaaaaatcctatataaaccttaacacatcaacccaacatatata |
112 |
Q |
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| T |
43128762 |
aatatacatccacacgaatccaacatcataccttgatctcattaacaatttatccacaaaaatcctatataaaccttaacacatcaacccaacatatata |
43128861 |
T |
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| Q |
113 |
aaactgcatactcaaataatggagatggagggtcaaactcaacctcaaaggcccccacttccagcccaccaagcccacacaaaacccatctctcgtttca |
212 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43128862 |
aaactgcatactcaaat---ggagatggagggtcaaactcaacctcaaaggcccccacttccagcccaccaagcccacacaaaacccatctctcgtttca |
43128958 |
T |
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| Q |
213 |
actcctatgtggcgaaaactagagtaggaaaatatttcaaactctcccaacgtaactccactttcaccactgaactccgtgccggaaccgccactttcct |
312 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43128959 |
actcctatgtggcgaaaactagagtaggaaaatattttaaactctcccaacgtaactccactttcaccactgaactccgtgccggaaccgccactttcct |
43129058 |
T |
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| Q |
313 |
caccatggcttacatc |
328 |
Q |
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|||||||||||||||| |
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| T |
43129059 |
caccatggcttacatc |
43129074 |
T |
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