View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3885_high_4 (Length: 258)

Name: NF3885_high_4
Description: NF3885
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3885_high_4
NF3885_high_4
[»] chr3 (4 HSPs)
chr3 (1-242)||(1111152-1111389)
chr3 (24-132)||(30443728-30443836)
chr3 (23-81)||(30443801-30443859)
chr3 (24-81)||(33943005-33943062)
[»] chr7 (2 HSPs)
chr7 (24-133)||(24710690-24710799)
chr7 (26-131)||(24097953-24098058)
[»] chr8 (4 HSPs)
chr8 (40-117)||(39753287-39753364)
chr8 (24-115)||(27567481-27567571)
chr8 (39-81)||(26962844-26962886)
chr8 (38-80)||(30028211-30028253)
[»] chr1 (1 HSPs)
chr1 (39-96)||(39257295-39257352)
[»] chr6 (2 HSPs)
chr6 (24-84)||(17114198-17114258)
chr6 (24-80)||(3788111-3788167)
[»] chr4 (1 HSPs)
chr4 (24-83)||(27918083-27918142)
[»] chr2 (1 HSPs)
chr2 (21-81)||(12170472-12170532)


Alignment Details
Target: chr3 (Bit Score: 166; Significance: 6e-89; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 166; E-Value: 6e-89
Query Start/End: Original strand, 1 - 242
Target Start/End: Original strand, 1111152 - 1111389
Alignment:
Q  1 aatatatatgatttatcaaattttactccctccgatcttttttataaaagaaaaataggtcaaccaaagttgatgtatttgatttacattacgaactaaa 100  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||| ||| |||| ||||||||||||||||| |||||||||||||||||||||||||    
T  1111152 aatatatatgattcatcaaattttactccctccgatcttttttataagagagaaatgggtcaaccaaagttgatatatttgatttacattacgaactaaa 1111251  T
Q  101 tatataaattttagttggcctatttatctcttacnnnnnnngaccaaagggagtattaacttcgtcttgaaaataaagtgaaatcatgtgatgttgtaaa 200  Q
    || |||||||||||||||||||||||||||||||       ||||| ||||||||||||||||||||||||||||||||||||||||||||   ||||||    
T  1111252 tacataaattttagttggcctatttatctcttac-aaaaaagaccagagggagtattaacttcgtcttgaaaataaagtgaaatcatgtga---tgtaaa 1111347  T
Q  201 ttgtataaataaagtgaaaagctttaaactaagttttttata 242  Q
    |||| |||||||||||||||||||||||||| ||||||||||    
T  1111348 ttgtgtaaataaagtgaaaagctttaaactacgttttttata 1111389  T

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Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 24 - 132
Target Start/End: Original strand, 30443728 - 30443836
Alignment:
Q  24 tactccctccgatcttttttataaaagaaaaataggtcaaccaaagttgatgtatttgatttacattacgaactaaatatataaattttagttggcctat 123  Q
    ||||||||||  |||||||||||| | | |||| ||||||| |||||| ||||||||| | || |||| |||| ||||| || || |||||||| || ||    
T  30443728 tactccctcccgtcttttttataagaaacaaatgggtcaacaaaagttaatgtatttggtctatattatgaaccaaatacatcaactttagttgaccaat 30443827  T
Q  124 ttatctctt 132  Q
    || ||||||    
T  30443828 ttgtctctt 30443836  T

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Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 23 - 81
Target Start/End: Complemental strand, 30443859 - 30443801
Alignment:
Q  23 ttactccctccgatcttttttataaaagaaaaataggtcaaccaaagttgatgtatttg 81  Q
    |||||||||||| || |||||| || ||| |||| ||||||| ||||||||||||||||    
T  30443859 ttactccctccggtcctttttacaagagacaaattggtcaactaaagttgatgtatttg 30443801  T

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Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 24 - 81
Target Start/End: Complemental strand, 33943062 - 33943005
Alignment:
Q  24 tactccctccgatcttttttataaaagaaaaataggtcaaccaaagttgatgtatttg 81  Q
    |||||| ||||||| | |||||||||||||  ||||||||| |||||| |||||||||    
T  33943062 tactccttccgatcctatttataaaagaaagttaggtcaacaaaagttaatgtatttg 33943005  T

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Target: chr7 (Bit Score: 46; Significance: 2e-17; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 24 - 133
Target Start/End: Complemental strand, 24710799 - 24710690
Alignment:
Q  24 tactccctccgatcttttttataaaagaaaaataggtcaaccaaagttgatgtatttgatttacattacgaactaaatatataaattttagttggcctat 123  Q
    ||||||||||| || ||||||||||||| || | ||||||| |||||||||||||||||| |||| || |||| ||||| || || |||||||| |  ||    
T  24710799 tactccctccggtcctttttataaaagacaactgggtcaacaaaagttgatgtatttgatctacaatatgaaccaaatacattaaatttagttgactcat 24710700  T
Q  124 ttatctctta 133  Q
    ||||||||||    
T  24710699 ttatctctta 24710690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 26 - 131
Target Start/End: Original strand, 24097953 - 24098058
Alignment:
Q  26 ctccctccgatcttttttataaaagaaaaataggtcaaccaaagttgatgtatttgatttacattacgaactaaatatataaattttagttggcctattt 125  Q
    |||||| ||||||||||||||| | | || ||||||||| ||| || |||||||| || || |||| |||  ||||| || ||||||||||| || ||||    
T  24097953 ctcccttcgatcttttttataagaaacaattaggtcaacaaaatttaatgtatttaatctatattatgaatcaaatacatcaattttagttgaccaattt 24098052  T
Q  126 atctct 131  Q
     |||||    
T  24098053 ttctct 24098058  T

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Target: chr8 (Bit Score: 34; Significance: 0.0000000004; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 40 - 117
Target Start/End: Complemental strand, 39753364 - 39753287
Alignment:
Q  40 ttttataaaagaaaaataggtcaaccaaagttgatgtatttgatttacattacgaactaaatatataaattttagttg 117  Q
    |||||||| ||| ||||| |||| | |||||||||||||||| ||||||||| |||| ||||| || || ||||||||    
T  39753364 ttttataagagacaaataagtcatctaaagttgatgtatttggtttacattatgaaccaaatacatcaactttagttg 39753287  T

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Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 24 - 115
Target Start/End: Original strand, 27567481 - 27567571
Alignment:
Q  24 tactccctccgatcttttttataaaagaaaaataggtcaaccaaagttgatgtatttgatttacattacgaactaaatatataaattttagt 115  Q
    |||||||| | |||||||| |||| | | |||| ||||||| |||||||||||||||| | || |||| |||| |||||||| |||||||||    
T  27567481 tactcccttcaatctttttcataagaaacaaatgggtcaac-aaagttgatgtatttggtctatattatgaaccaaatatatcaattttagt 27567571  T

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Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 39 - 81
Target Start/End: Complemental strand, 26962886 - 26962844
Alignment:
Q  39 tttttataaaagaaaaataggtcaaccaaagttgatgtatttg 81  Q
    ||||||||| |||||||| ||||||||||| ||||||||||||    
T  26962886 tttttataagagaaaaattggtcaaccaaaattgatgtatttg 26962844  T

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Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 38 - 80
Target Start/End: Original strand, 30028211 - 30028253
Alignment:
Q  38 ttttttataaaagaaaaataggtcaaccaaagttgatgtattt 80  Q
    |||||||||||||| |||||||||||| ||||||||| |||||    
T  30028211 ttttttataaaagataaataggtcaacaaaagttgatttattt 30028253  T

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Target: chr1 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 39 - 96
Target Start/End: Original strand, 39257295 - 39257352
Alignment:
Q  39 tttttataaaagaaaaataggtcaaccaaagttgatgtatttgatttacattacgaac 96  Q
    ||||||||| ||| ||||| ||||| ||||||||||||||||||| ||||||| ||||    
T  39257295 tttttataagagataaataagtcaatcaaagttgatgtatttgatctacattatgaac 39257352  T

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Target: chr6 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 24 - 84
Target Start/End: Original strand, 17114198 - 17114258
Alignment:
Q  24 tactccctccgatcttttttataaaagaaaaataggtcaaccaaagttgatgtatttgatt 84  Q
    ||||| |||||||  ||||||||| ||| |||||| |||| ||||||||||||||||||||    
T  17114198 tactcgctccgattatttttataagagacaaatagatcaatcaaagttgatgtatttgatt 17114258  T

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Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 24 - 80
Target Start/End: Complemental strand, 3788167 - 3788111
Alignment:
Q  24 tactccctccgatcttttttataaaagaaaaataggtcaaccaaagttgatgtattt 80  Q
    ||||||||||| |||| ||||||| | |||  ||||||||| |||||||||||||||    
T  3788167 tactccctccggtcttatttataagataaatttaggtcaacaaaagttgatgtattt 3788111  T

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Target: chr4 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 24 - 83
Target Start/End: Original strand, 27918083 - 27918142
Alignment:
Q  24 tactccctccgatcttttttataaaagaaaaataggtcaaccaaagttgatgtatttgat 83  Q
    |||||||||||| |||||||| |||||| ||||  |||||| ||||||||| ||||||||    
T  27918083 tactccctccgaccttttttaaaaaagacaaatgagtcaacaaaagttgatatatttgat 27918142  T

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Target: chr2 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 21 - 81
Target Start/End: Complemental strand, 12170532 - 12170472
Alignment:
Q  21 ttttactccctccgatcttttttataaaagaaaaataggtcaaccaaagttgatgtatttg 81  Q
    ||||||||||||||||| | |||| || |||||| ||||||||  |||||| |||||||||    
T  12170532 ttttactccctccgatcctatttacaagagaaaattaggtcaataaaagttaatgtatttg 12170472  T

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