View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3885_low_1 (Length: 640)

Name: NF3885_low_1
Description: NF3885
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3885_low_1
NF3885_low_1
[»] chr8 (2 HSPs)
chr8 (23-377)||(15156466-15156821)
chr8 (409-621)||(15156822-15157034)
[»] chr3 (3 HSPs)
chr3 (381-621)||(29901342-29901580)
chr3 (292-378)||(45401879-45401965)
chr3 (575-621)||(39225181-39225227)
[»] chr1 (4 HSPs)
chr1 (381-621)||(14713358-14713596)
chr1 (575-622)||(18998617-18998664)
chr1 (574-622)||(5087909-5087957)
chr1 (577-621)||(11636222-11636266)
[»] scaffold0153 (4 HSPs)
scaffold0153 (381-567)||(26100-26289)
scaffold0153 (222-366)||(25550-25692)
scaffold0153 (54-105)||(25366-25417)
scaffold0153 (151-199)||(25465-25513)
[»] chr6 (7 HSPs)
chr6 (381-567)||(25996628-25996817)
chr6 (381-567)||(26096010-26096199)
chr6 (217-366)||(26095475-26095624)
chr6 (234-366)||(25996065-25996197)
chr6 (151-203)||(25996013-25996065)
chr6 (151-202)||(26095430-26095481)
chr6 (54-131)||(6873472-6873550)
[»] chr5 (1 HSPs)
chr5 (292-378)||(34319072-34319158)
[»] chr2 (1 HSPs)
chr2 (225-278)||(25197868-25197921)
[»] chr4 (3 HSPs)
chr4 (292-344)||(47719762-47719814)
chr4 (314-361)||(47853928-47853975)
chr4 (569-621)||(46332685-46332738)
[»] chr7 (3 HSPs)
chr7 (575-621)||(16015872-16015918)
chr7 (577-622)||(28358991-28359036)
chr7 (569-617)||(39079785-39079833)


Alignment Details
Target: chr8 (Bit Score: 316; Significance: 1e-178; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 316; E-Value: 1e-178
Query Start/End: Original strand, 23 - 377
Target Start/End: Original strand, 15156466 - 15156821
Alignment:
Q  23 taaccatttccttccacaatcttcacctaaccaggggctgtatgaaaatgcattcaatttagcttcaccataagcagaaacaacac-aagcgaaggttga 121  Q
    |||||||||||||||||||||||||||||| ||||  ||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  15156466 taaccatttccttccacaatcttcacctaatcaggaactgtatgcaaatgcattcaatttagcttcaccataagcagaaacaacaccaagcgaaggttga 15156565  T
Q  122 aaatggcaataatttcaaagtatttcaattcttctcactgatgactcacgcgcctcaccctaacatctctattatctcgtccctgctatagtttctctcg 221  Q
    ||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15156566 aaatggcaatagtttcaaagtatttcaattcttctcactgacgactcacgcgcctcaccctaacatctctattatctcgtccctgctatagtttctctcg 15156665  T
Q  222 tctctctcacctcttgttgttagataacctaaggtaagccaatcaattctccaatttcatatttcttctctatttcaattggattcaagtattttgtttt 321  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||    
T  15156666 tctctctcacctcttgttgttagataacctaaggtaagccaatcaattctccaatttctcatttcttctctatttcaattggattcaagtattttgtttt 15156765  T
Q  322 aatgtgctccaagtgttcgacaaaatacctcaatgattaaatttcctttttctttg 377  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15156766 aatgtgctccaagtgttcgacaaaatacctcaatgattaaatttcctttttctttg 15156821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 409 - 621
Target Start/End: Original strand, 15156822 - 15157034
Alignment:
Q  409 gtgataataatgttgtattatctgactagtagcttagaggagtctagtgagagaaattctgttaatggggattaatcctagagctaagtaattgtaaata 508  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15156822 gtgataataatgttgtattatctgactagtagcttagaggagtctagtgagagaaattctgttaatggggattaatcctagagctaagtaattgtaaata 15156921  T
Q  509 tagtatcgaggtttcaatttctgtatgtttttattgctaaaaagaatgctattgttgtatatttcgccttcattgtggtccgcctctagccgtctaattg 608  Q
    |||||||||||| ||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||    
T  15156922 tagtatcgaggtatcaatttctgtatgtttttgttgctaaaaagaatgctactgttgtatatttcgccttcattgcggtccgcctctagccgtctaattg 15157021  T
Q  609 cggaatttgggtt 621  Q
    |||||||||||||    
T  15157022 cggaatttgggtt 15157034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 138; Significance: 8e-72; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 138; E-Value: 8e-72
Query Start/End: Original strand, 381 - 621
Target Start/End: Original strand, 29901342 - 29901580
Alignment:
Q  381 taagtgatgtgatgtaagtttatgataagtgataataatgttgtattatctgactagtagcttagaggagtctagtgagagaaattctgttaatggggat 480  Q
    |||||||||||||||||||  |  ||||||||| |||||||||||||||||||||||||| ||| ||||||||||||||||||||| |||||||| ||||    
T  29901342 taagtgatgtgatgtaagtaca--ataagtgatgataatgttgtattatctgactagtagtttataggagtctagtgagagaaattatgttaatgaggat 29901439  T
Q  481 taatcctagagctaagtaattgtaaatatagtatcgaggtttcaatttctgtatgtttttattgctaaaaagaatgctattgttgtatatttcgccttca 580  Q
    |||||||||||||||||||||||||| |||| ||||||||  ||||||||| || || || ||| |||||| ||||||||||||||| ||||||||||||    
T  29901440 taatcctagagctaagtaattgtaaacatagcatcgaggtaacaatttctgcattttgttgttgttaaaaataatgctattgttgtaaatttcgccttca 29901539  T
Q  581 ttgtggtccgcctctagccgtctaattgcggaatttgggtt 621  Q
    | | |||| || |||||||||||||||||||||| ||||||    
T  29901540 tcgcggtctgcttctagccgtctaattgcggaatatgggtt 29901580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 292 - 378
Target Start/End: Complemental strand, 45401965 - 45401879
Alignment:
Q  292 tatttcaattggattcaagtattttgttttaatgtgctccaagtgttcgacaaaatacctcaatgattaaatttcctttttctttgt 378  Q
    ||||| ||||| ||||||||||||||||||||||||||| |||||||| ||||||| ||| ||||| |||||||| |||||||||||    
T  45401965 tatttgaattgaattcaagtattttgttttaatgtgctcaaagtgttcaacaaaatgcctgaatgagtaaatttcgtttttctttgt 45401879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 575 - 621
Target Start/End: Complemental strand, 39225227 - 39225181
Alignment:
Q  575 ccttcattgtggtccgcctctagccgtctaattgcggaatttgggtt 621  Q
    ||||||||||||||  |||||||||| |||||||||| |||||||||    
T  39225227 ccttcattgtggtctccctctagccgcctaattgcggcatttgggtt 39225181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 138; Significance: 8e-72; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 138; E-Value: 8e-72
Query Start/End: Original strand, 381 - 621
Target Start/End: Complemental strand, 14713596 - 14713358
Alignment:
Q  381 taagtgatgtgatgtaagtttatgataagtgataataatgttgtattatctgactagtagcttagaggagtctagtgagagaaattctgttaatggggat 480  Q
    |||||||||||||||||||  |  ||||||||| |||||||||||||||||||||||||| ||| ||||||||||||||||||||| |||||||| ||||    
T  14713596 taagtgatgtgatgtaagtaca--ataagtgatgataatgttgtattatctgactagtagtttataggagtctagtgagagaaattatgttaatgaggat 14713499  T
Q  481 taatcctagagctaagtaattgtaaatatagtatcgaggtttcaatttctgtatgtttttattgctaaaaagaatgctattgttgtatatttcgccttca 580  Q
    |||||||||||||||||||||||||| |||| ||||||||  ||||||||| || || || ||| |||||| ||||||||||||||| ||||||||||||    
T  14713498 taatcctagagctaagtaattgtaaacatagcatcgaggtaacaatttctgcattttgttgttgttaaaaataatgctattgttgtaaatttcgccttca 14713399  T
Q  581 ttgtggtccgcctctagccgtctaattgcggaatttgggtt 621  Q
    | | |||| || |||||||||||||||||||||| ||||||    
T  14713398 tcgcggtctgcttctagccgtctaattgcggaatatgggtt 14713358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 575 - 622
Target Start/End: Original strand, 18998617 - 18998664
Alignment:
Q  575 ccttcattgtggtccgcctctagccgtctaattgcggaatttgggttt 622  Q
    |||||| ||||||||||| ||||||||| |||||||||||||||||||    
T  18998617 ccttcactgtggtccgcccctagccgtcaaattgcggaatttgggttt 18998664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 574 - 622
Target Start/End: Complemental strand, 5087957 - 5087909
Alignment:
Q  574 gccttcattgtggtccgcctctagccgtctaattgcggaatttgggttt 622  Q
    |||||||||| ||||| || ||||||||||||||| || ||||||||||    
T  5087957 gccttcattgcggtccacccctagccgtctaattgtggtatttgggttt 5087909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 577 - 621
Target Start/End: Complemental strand, 11636266 - 11636222
Alignment:
Q  577 ttcattgtggtccgcctctagccgtctaattgcggaatttgggtt 621  Q
    ||||||||||||| ||||||||| ||||||||| | |||||||||    
T  11636266 ttcattgtggtccccctctagccatctaattgcagcatttgggtt 11636222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0153 (Bit Score: 124; Significance: 2e-63; HSPs: 4)
Name: scaffold0153
Description:

Target: scaffold0153; HSP #1
Raw Score: 124; E-Value: 2e-63
Query Start/End: Original strand, 381 - 567
Target Start/End: Original strand, 26100 - 26289
Alignment:
Q  381 taagtgatgtgatgtaagtttatgataagtgataataatgttgtattatctgactagtagcttagaggagtctagtgagagaaattctgttaatggggat 480  Q
    ||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||| | |||||||||||||||||||||||||||||||||||    
T  26100 taagtgatgtgatgtaagtttatgataagtgatgataatgttatattatctgactagtagctgataggagtctagtgagagaaattctgttaatggggat 26199  T
Q  481 taatcctagagctaagtaattgtaaatatagtat---cgaggtttcaatttctgtatgtttttattgctaaaaagaatgctattgttgta 567  Q
    ||||||||||||||||||||||||||||||  ||    |||||   |||||||| |||||||| |||||||||||||||||| |||||||    
T  26200 taatcctagagctaagtaattgtaaatataacattgaggaggtaaaaatttctgcatgtttttgttgctaaaaagaatgctactgttgta 26289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0153; HSP #2
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 222 - 366
Target Start/End: Original strand, 25550 - 25692
Alignment:
Q  222 tctctctcacctcttgttgttagataacctaaggtaagccaatcaattctccaatttcatatttcttctctatttcaattggattcaagtattttgtttt 321  Q
    ||||||||||||||||||||||||||| |||||||||||||||  |||||||||||||  ||||||||||||||| ||||||||| ||||||||||||||    
T  25550 tctctctcacctcttgttgttagataagctaaggtaagccaattgattctccaatttctcatttcttctctatttgaattggatt-aagtattttgtttt 25648  T
Q  322 aatgtgctccaagtgttcgacaaaatacctcaatgattaaatttc 366  Q
    ||||||||||||||||||||||||||  || ||||||||||||||    
T  25649 aatgtgctccaagtgttcgacaaaat-gctgaatgattaaatttc 25692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0153; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 54 - 105
Target Start/End: Original strand, 25366 - 25417
Alignment:
Q  54 caggggctgtatgaaaatgcattcaatttagcttcaccataagcagaaacaa 105  Q
    ||||||||||||||| ||| |||||||||||||||||||||||||| |||||    
T  25366 caggggctgtatgaacatgtattcaatttagcttcaccataagcagcaacaa 25417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0153; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 151 - 199
Target Start/End: Original strand, 25465 - 25513
Alignment:
Q  151 tcttctcactgatgactcacgcgcctcaccctaacatctctattatctc 199  Q
    |||||||||||| ||||||| |||||||||||||| ||| |||||||||    
T  25465 tcttctcactgacgactcactcgcctcaccctaacgtctgtattatctc 25513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 124; Significance: 2e-63; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 124; E-Value: 2e-63
Query Start/End: Original strand, 381 - 567
Target Start/End: Original strand, 25996628 - 25996817
Alignment:
Q  381 taagtgatgtgatgtaagtttatgataagtgataataatgttgtattatctgactagtagcttagaggagtctagtgagagaaattctgttaatggggat 480  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||| | |||| ||||||||||||||||||||||||||||||    
T  25996628 taagtgatgtgatgtaagtttatgataagtgatgataatgttgtattatctgactagcagctgataggaatctagtgagagaaattctgttaatggggat 25996727  T
Q  481 taatcctagagctaagtaattgtaaatatagtatc---gaggtttcaatttctgtatgtttttattgctaaaaagaatgctattgttgta 567  Q
    ||||||||||||||||||||||||||||||  |||   |||||   |||||||| |||||||| |||||||||||||||||| |||||||    
T  25996728 taatcctagagctaagtaattgtaaatataacatcgaggaggtaaaaatttctgcatgtttttgttgctaaaaagaatgctactgttgta 25996817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 124; E-Value: 2e-63
Query Start/End: Original strand, 381 - 567
Target Start/End: Original strand, 26096010 - 26096199
Alignment:
Q  381 taagtgatgtgatgtaagtttatgataagtgataataatgttgtattatctgactagtagcttagaggagtctagtgagagaaattctgttaatggggat 480  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| | |||||||||||||||||| ||||||||||||||||    
T  26096010 taagtgatgtgatgtaagtttatgataagtgatgataatgttgtattatctgactagtagctgataggagtctagtgagagaacttctgttaatggggat 26096109  T
Q  481 taatcctagagctaagtaattgtaaatatagtat---cgaggtttcaatttctgtatgtttttattgctaaaaagaatgctattgttgta 567  Q
    ||||||||||||||||||||||||||||||  ||    |||||   |||||||| |||||||| |||||||||||||||||| |||||||    
T  26096110 taatcctagagctaagtaattgtaaatataacattgaggaggtaaaaatttctgcatgtttttgttgctaaaaagaatgctactgttgta 26096199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 118; E-Value: 7e-60
Query Start/End: Original strand, 217 - 366
Target Start/End: Original strand, 26095475 - 26095624
Alignment:
Q  217 tctcgtctctctcacctcttgttgttagataacctaaggtaagccaatcaattctccaatttcatatttcttctctatttcaattggattcaagtatttt 316  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||  ||||||||||||||| |||||||||||||| ||||    
T  26095475 tctcgtctctctcacctcttgttgttagataagctaaggtaagccaatcgattctccaatttctcatttcttctctatttgaattggattcaagtttttt 26095574  T
Q  317 gttttaatgtgctccaagtgttcgacaaaatacctcaatgattaaatttc 366  Q
    ||||||||||||||||||||||||||||||| ||| ||||||||||||||    
T  26095575 gttttaatgtgctccaagtgttcgacaaaatgcctgaatgattaaatttc 26095624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 101; E-Value: 1e-49
Query Start/End: Original strand, 234 - 366
Target Start/End: Original strand, 25996065 - 25996197
Alignment:
Q  234 cttgttgttagataacctaaggtaagccaatcaattctccaatttcatatttcttctctatttcaattggattcaagtattttgttttaatgtgctccaa 333  Q
    ||||||||||||||| |||||||||||||||| |||||||||||||  ||||||||||||||| |||| |||||||||||||||||||||||||||||||    
T  25996065 cttgttgttagataagctaaggtaagccaatcgattctccaatttctcatttcttctctatttgaatttgattcaagtattttgttttaatgtgctccaa 25996164  T
Q  334 gtgttcgacaaaatacctcaatgattaaatttc 366  Q
    |||||||||||||| ||| ||||||||||||||    
T  25996165 gtgttcgacaaaatgcctgaatgattaaatttc 25996197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 151 - 203
Target Start/End: Original strand, 25996013 - 25996065
Alignment:
Q  151 tcttctcactgatgactcacgcgcctcaccctaacatctctattatctcgtcc 203  Q
    |||||||||||| ||||||| |||||||||||||| ||| |||||||||||||    
T  25996013 tcttctcactgacgactcactcgcctcaccctaacgtctgtattatctcgtcc 25996065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 151 - 202
Target Start/End: Original strand, 26095430 - 26095481
Alignment:
Q  151 tcttctcactgatgactcacgcgcctcaccctaacatctctattatctcgtc 202  Q
    |||||||||||| ||||||| |||||||||||||| ||| ||||||||||||    
T  26095430 tcttctcactgacgactcactcgcctcaccctaacgtctgtattatctcgtc 26095481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 54 - 131
Target Start/End: Complemental strand, 6873550 - 6873472
Alignment:
Q  54 caggggctgtatgaaaatgcattcaatttagcttcaccataagcagaaacaaca-caagcgaaggttgaaaatggcaat 131  Q
    |||||||| |||||||||||||||| |||||||| | |||| |||  ||||||| |||||||| |||||||||| ||||    
T  6873550 caggggctatatgaaaatgcattcactttagctttatcatatgcaacaacaacaccaagcgaaagttgaaaatgacaat 6873472  T

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Target: chr5 (Bit Score: 43; Significance: 0.000000000000004; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 292 - 378
Target Start/End: Complemental strand, 34319158 - 34319072
Alignment:
Q  292 tatttcaattggattcaagtattttgttttaatgtgctccaagtgttcgacaaaatacctcaatgattaaatttcctttttctttgt 378  Q
    ||||| ||||||||| ||||| ||||||||||||||| | ||| |||||||||||| |||  ||||||||||||  |||||||||||    
T  34319158 tatttgaattggattaaagtagtttgttttaatgtgcactaagagttcgacaaaatgcctggatgattaaattttatttttctttgt 34319072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 34; Significance: 0.0000000009; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 225 - 278
Target Start/End: Original strand, 25197868 - 25197921
Alignment:
Q  225 ctctcacctcttgttgttagataacctaaggtaagccaatcaattctccaattt 278  Q
    ||||| ||||||||| ||| ||||  ||||||||||||||||||||||||||||    
T  25197868 ctctcgcctcttgttattaaataaggtaaggtaagccaatcaattctccaattt 25197921  T

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Target: chr4 (Bit Score: 33; Significance: 0.000000004; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 292 - 344
Target Start/End: Original strand, 47719762 - 47719814
Alignment:
Q  292 tatttcaattggattcaagtattttgttttaatgtgctccaagtgttcgacaa 344  Q
    ||||| ||||||||| ||||| |||||||||| ||| ||||||||||||||||    
T  47719762 tatttgaattggatttaagtagtttgttttaacgtgttccaagtgttcgacaa 47719814  T

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Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 314 - 361
Target Start/End: Complemental strand, 47853975 - 47853928
Alignment:
Q  314 tttgttttaatgtgctccaagtgttcgacaaaatacctcaatgattaa 361  Q
    |||||||||| ||| ||||||||||||||||||| ||| |||||||||    
T  47853975 tttgttttaacgtgttccaagtgttcgacaaaatgcctgaatgattaa 47853928  T

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Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 569 - 621
Target Start/End: Complemental strand, 46332738 - 46332685
Alignment:
Q  569 atttcgccttcattgtggtccgcctct-agccgtctaattgcggaatttgggtt 621  Q
    ||||||||||||||| |||||||| || ||||| |||||||||| |||||||||    
T  46332738 atttcgccttcattgcggtccgcccctaagccgcctaattgcggcatttgggtt 46332685  T

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Target: chr7 (Bit Score: 31; Significance: 0.00000006; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 575 - 621
Target Start/End: Complemental strand, 16015918 - 16015872
Alignment:
Q  575 ccttcattgtggtccgcctctagccgtctaattgcggaatttgggtt 621  Q
    |||||||||||||||| | ||||| |||||||||||| |||||||||    
T  16015918 ccttcattgtggtccgtccctagctgtctaattgcggcatttgggtt 16015872  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 577 - 622
Target Start/End: Original strand, 28358991 - 28359036
Alignment:
Q  577 ttcattgtggtccgcctctagccgtctaattgcggaatttgggttt 622  Q
    |||||||||||||||| |||| | ||||||||||| ||||||||||    
T  28358991 ttcattgtggtccgcccctagtcatctaattgcggcatttgggttt 28359036  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 569 - 617
Target Start/End: Complemental strand, 39079833 - 39079785
Alignment:
Q  569 atttcgccttcattgtggtccgcctctagccgtctaattgcggaatttg 617  Q
    ||||||||||||||| |||| ||| |||||| ||||||||||| |||||    
T  39079833 atttcgccttcattgcggtctgcccctagccatctaattgcggcatttg 39079785  T

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