View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3885_low_2 (Length: 473)

Name: NF3885_low_2
Description: NF3885
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3885_low_2
NF3885_low_2
[»] chr2 (5 HSPs)
chr2 (227-458)||(30930985-30931216)
chr2 (227-458)||(30919498-30919729)
chr2 (29-141)||(30930786-30930898)
chr2 (227-458)||(30910050-30910281)
chr2 (94-141)||(30919395-30919442)
[»] chr8 (10 HSPs)
chr8 (290-459)||(29245622-29245791)
chr8 (280-393)||(29234207-29234320)
chr8 (287-402)||(29215006-29215121)
chr8 (307-402)||(29357377-29357472)
chr8 (288-445)||(29253947-29254104)
chr8 (289-402)||(29285745-29285858)
chr8 (317-402)||(29340533-29340618)
chr8 (318-402)||(29317572-29317656)
chr8 (343-400)||(29311057-29311114)
chr8 (346-415)||(29223756-29223825)
[»] chr3 (1 HSPs)
chr3 (310-402)||(43815071-43815163)
[»] chr5 (1 HSPs)
chr5 (284-379)||(14497535-14497630)


Alignment Details
Target: chr2 (Bit Score: 204; Significance: 1e-111; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 227 - 458
Target Start/End: Original strand, 30930985 - 30931216
Alignment:
Q  227 gagtttctgtgattgcataccacatgtttataatcagtggcatccgttgctgcttgacttaattttcttccaaacgtgtcaatagagctagctcttaata 326  Q
    |||||||| ||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  30930985 gagtttctatgattgcataccacatgtttatattcagtggcatccgttgctacttgacttaattttcttccaaacgtgtcaatagagctagctcttaata 30931084  T
Q  327 tgtcttcttcttttgctcttctaattggaattgttccttcgggacatgattcatcgtataagctccacaattgaaacttaccactcaaaatgtcggtttg 426  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  30931085 tgtcttcttcttttgctcttctaattggaattgttccttctggacatgattcatcatataagctccacaattgaaacttaccactcaaaatgtcggtttg 30931184  T
Q  427 gttatttccttttgatctttctagaggatcct 458  Q
    |||||| |||||||||||||||| ||||||||    
T  30931185 gttattgccttttgatctttctaaaggatcct 30931216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 227 - 458
Target Start/End: Original strand, 30919498 - 30919729
Alignment:
Q  227 gagtttctgtgattgcataccacatgtttataatcagtggcatccgttgctgcttgacttaattttcttccaaacgtgtcaatagagctagctcttaata 326  Q
    |||||||||||||||||||||||||||||||| | ||||| |||| || |  ||||| ||||||||||||||||||||| ||||||||||||||||||||    
T  30919498 gagtttctgtgattgcataccacatgtttatatttagtggtatccattccaacttgatttaattttcttccaaacgtgttaatagagctagctcttaata 30919597  T
Q  327 tgtcttcttcttttgctcttctaattggaattgttccttcgggacatgattcatcgtataagctccacaattgaaacttaccactcaaaatgtcggtttg 426  Q
    ||||||||||||||| ||||||||||||||  | |||||| |||||||||||  |  |||||||||| |||||||| ||  |||||||||  || |||||    
T  30919598 tgtcttcttcttttgttcttctaattggaacagatccttctggacatgattcgccagataagctccataattgaaagttgtcactcaaaagatccgtttg 30919697  T
Q  427 gttatttccttttgatctttctagaggatcct 458  Q
    |||||  ||| ||| ||||||| |||||||||    
T  30919698 gttatgacctcttggtctttcttgaggatcct 30919729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 29 - 141
Target Start/End: Original strand, 30930786 - 30930898
Alignment:
Q  29 actttaaagacgattggttttgtcatctaaaataaagttaagagtgcaacttattactcgtttgtcttctattcatgtgtaattttctatatacatttga 128  Q
    ||||||||||  |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  30930786 actttaaagaatattggttttgtcatctaaaaaaaagttaagagtgcaacttattactcgtttgtcttctattcatgtgtaattttctatatacattaga 30930885  T
Q  129 catttatccctct 141  Q
    |||||||||||||    
T  30930886 catttatccctct 30930898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 227 - 458
Target Start/End: Original strand, 30910050 - 30910281
Alignment:
Q  227 gagtttctgtgattgcataccacatgtttataatcagtggcatccgttgctgcttgacttaattttcttccaaacgtgtcaatagagctagctcttaata 326  Q
    ||||| |||||||||||||||||||||||||| | |||||  |||  | |  ||||  ||||||||||||||||||||| || |||| ||||||||||||    
T  30910050 gagttcctgtgattgcataccacatgtttatatttagtggtttccactccaacttgcattaattttcttccaaacgtgttaacagagttagctcttaata 30910149  T
Q  327 tgtcttcttcttttgctcttctaattggaattgttccttcgggacatgattcatcgtataagctccacaattgaaacttaccactcaaaatgtcggtttg 426  Q
    | || |||| ||||| |||||||||||||||||||||||| | |||||||||| |  |||| |||||||||||||| ||| |||||| ||| || |||      
T  30910150 tatcctctttttttgttcttctaattggaattgttccttctgaacatgattcacctgataaactccacaattgaaagttatcactcagaatatctgttgc 30910249  T
Q  427 gttatttccttttgatctttctagaggatcct 458  Q
    |||||  ||| ||| ||||||| |||||||||    
T  30910250 gttataacctcttggtctttcttgaggatcct 30910281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 94 - 141
Target Start/End: Original strand, 30919395 - 30919442
Alignment:
Q  94 cttctattcatgtgtaattttctatatacatttgacatttatccctct 141  Q
    |||| |||||| | |||||||||||||| |||||||||||||||||||    
T  30919395 cttccattcatttataattttctatatatatttgacatttatccctct 30919442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 58; Significance: 3e-24; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 290 - 459
Target Start/End: Complemental strand, 29245791 - 29245622
Alignment:
Q  290 tttcttccaaacgtgtcaatagagctagctcttaatatgtcttcttcttttgctcttctaattggaattgttccttcgggacatgattcatcgtataagc 389  Q
    |||||||||||  | |||||||| | ||||||| | |||||||||||| ||| |||||||||||||||||||||||| |||||||||||| |  | || |    
T  29245791 tttcttccaaaactatcaatagatccagctcttgagatgtcttcttctgttgttcttctaattggaattgttccttcaggacatgattcaccagacaaac 29245692  T
Q  390 tccacaattgaaacttaccactcaaaatgtcggtttggttatttccttttgatctttctagaggatcctg 459  Q
    |||||||||||||  |  |||||||| |     |||||||||  ||||||||||||||| ||||||||||    
T  29245691 tccacaattgaaagatgtcactcaaattacttatttggttatgcccttttgatctttctggaggatcctg 29245622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 280 - 393
Target Start/End: Complemental strand, 29234320 - 29234207
Alignment:
Q  280 ttgacttaattttcttccaaacgtgtcaatagagctagctcttaatatgtcttcttcttttgctcttctaattggaattgttccttcgggacatgattca 379  Q
    |||| ||||||||||||||||  ||  ||||||||  ||||||||||||||||  ||||||| ||||| ||||||||||| | |||||||||||||||||    
T  29234320 ttgatttaattttcttccaaatttgctaatagagccggctcttaatatgtcttgctcttttgttcttccaattggaattgattcttcgggacatgattca 29234221  T
Q  380 tcgtataagctcca 393  Q
     | |||||||||||    
T  29234220 ccatataagctcca 29234207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 287 - 402
Target Start/End: Original strand, 29215006 - 29215121
Alignment:
Q  287 aattttcttccaaacgtgtcaatagagctagctcttaatatgtcttcttcttttgctcttctaattggaattgttccttcgggacatgattcatcgtata 386  Q
    |||||||||||||| |||| |||||||| ||||||||| || ||  ||||||||  ||||||||| |||||||||||||| |||||||||||| |  | |    
T  29215006 aattttcttccaaatgtgttaatagagcaagctcttaacatatcaccttcttttattcttctaatcggaattgttccttctggacatgattcacctgaaa 29215105  T
Q  387 agctccacaattgaaa 402  Q
    | ||||||||||||||    
T  29215106 aactccacaattgaaa 29215121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 307 - 402
Target Start/End: Complemental strand, 29357472 - 29357377
Alignment:
Q  307 aatagagctagctcttaatatgtcttcttcttttgctcttctaattggaattgttccttcgggacatgattcatcgtataagctccacaattgaaa 402  Q
    ||||||| |||||||||| | ||||| |||| || ||||||||||||||||||||||||| || ||||||||| |  | |||||||||||||||||    
T  29357472 aatagagttagctcttaacaagtcttgttctgttactcttctaattggaattgttccttcagggcatgattcaccagacaagctccacaattgaaa 29357377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 288 - 445
Target Start/End: Complemental strand, 29254104 - 29253947
Alignment:
Q  288 attttcttccaaacgtgtcaatagagctagctcttaatatgtcttcttcttttgctcttctaattggaattgttccttcgggacatgattcatcgtataa 387  Q
    |||||||||||||| | | || |||  |||||||||| || ||||||| ||||| |||||||||||| ||||||||    ||||||||||||||   |||    
T  29254104 attttcttccaaacatattaagagatttagctcttaagatatcttctttttttgttcttctaattgggattgttccaatcggacatgattcatcaggtaa 29254005  T
Q  388 gctccacaattgaaacttaccactcaaaatgtcggtttggttatttccttttgatctt 445  Q
    | ||||||||||||| ||  |||||||||| ||  |||||||||| ||| ||| ||||    
T  29254004 gttccacaattgaaagttgtcactcaaaatatccttttggttattgcctcttggtctt 29253947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 289 - 402
Target Start/End: Complemental strand, 29285858 - 29285745
Alignment:
Q  289 ttttcttccaaacgtgtcaatagagctagctcttaatatgtcttcttcttttgctcttctaattggaattgttccttcgggacatgattcatcgtataag 388  Q
    ||||||||||||  ||  |||||||  | |||||||||||||||||||  ||  ||||||||||||||||||||| || |||||||||||| |  ||||     
T  29285858 ttttcttccaaatctgctaatagagtcaactcttaatatgtcttcttcggttattcttctaattggaattgttccatcaggacatgattcaccagataaa 29285759  T
Q  389 ctccacaattgaaa 402  Q
    |||||| |||||||    
T  29285758 ctccacgattgaaa 29285745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 317 - 402
Target Start/End: Complemental strand, 29340618 - 29340533
Alignment:
Q  317 gctcttaatatgtcttcttcttttgctcttctaattggaattgttccttcgggacatgattcatcgtataagctccacaattgaaa 402  Q
    |||||||| | ||||| |||  ||| |||||||| |||||||||||||||||||||||||||| |  | ||| |||||||||||||    
T  29340618 gctcttaacaagtcttgttcggttgttcttctaactggaattgttccttcgggacatgattcaccagacaaggtccacaattgaaa 29340533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 318 - 402
Target Start/End: Complemental strand, 29317656 - 29317572
Alignment:
Q  318 ctcttaatatgtcttcttcttttgctcttctaattggaattgttccttcgggacatgattcatcgtataagctccacaattgaaa 402  Q
    ||||||| | ||||| |||| ||  |||||||| |||||||||||| ||||||||||||||| |  | |||||||||||||||||    
T  29317656 ctcttaacacgtcttgttctgttattcttctaactggaattgttccatcgggacatgattcaccagacaagctccacaattgaaa 29317572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 343 - 400
Target Start/End: Complemental strand, 29311114 - 29311057
Alignment:
Q  343 tcttctaattggaattgttccttcgggacatgattcatcgtataagctccacaattga 400  Q
    |||||||||||||||||||||||| |||||||||||| |  | || ||||||||||||    
T  29311114 tcttctaattggaattgttccttcaggacatgattcaccagacaatctccacaattga 29311057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 346 - 415
Target Start/End: Complemental strand, 29223825 - 29223756
Alignment:
Q  346 tctaattggaattgttccttcgggacatgattcatcgtataagctccacaattgaaacttaccactcaaa 415  Q
    |||||||| ||| ||| |||| |||||||||||| |  ||||||||||||||||||| ||  ||||||||    
T  29223825 tctaattgcaatcgtttcttctggacatgattcaccagataagctccacaattgaaagttgtcactcaaa 29223756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 53; Significance: 3e-21; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 310 - 402
Target Start/End: Original strand, 43815071 - 43815163
Alignment:
Q  310 agagctagctcttaatatgtcttcttcttttgctcttctaattggaattgttccttcgggacatgattcatcgtataagctccacaattgaaa 402  Q
    ||||| ||||||||||||||||| |||| ||| |||||||||||||||||| ||||| |||||||||||| || |||| ||||||| ||||||    
T  43815071 agagccagctcttaatatgtcttgttctgttgttcttctaattggaattgtaccttcaggacatgattcaccggataaactccacagttgaaa 43815163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 48; Significance: 3e-18; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 284 - 379
Target Start/End: Original strand, 14497535 - 14497630
Alignment:
Q  284 cttaattttcttccaaacgtgtcaatagagctagctcttaatatgtcttcttcttttgctcttctaattggaattgttccttcgggacatgattca 379  Q
    ||||||||||||||||| ||||  ||||| || || ||||| ||||||| |||| ||| ||||||||| |||||||||||||| ||||||||||||    
T  14497535 cttaattttcttccaaatgtgttgatagaacttgcccttaacatgtcttgttctgttgttcttctaatcggaattgttccttctggacatgattca 14497630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University