View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3885_low_3 (Length: 392)

Name: NF3885_low_3
Description: NF3885
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3885_low_3
NF3885_low_3
[»] chr2 (16 HSPs)
chr2 (78-293)||(35368516-35368725)
chr2 (175-344)||(35341010-35341188)
chr2 (145-340)||(35355993-35356183)
chr2 (174-340)||(35374621-35374784)
chr2 (167-293)||(35343134-35343258)
chr2 (166-327)||(35335863-35336021)
chr2 (168-327)||(35346378-35346532)
chr2 (168-343)||(35351427-35351605)
chr2 (168-340)||(35347807-35347983)
chr2 (166-340)||(35364657-35364830)
chr2 (342-392)||(35371740-35371790)
chr2 (186-340)||(35371834-35371983)
chr2 (342-392)||(35355897-35355947)
chr2 (337-392)||(35348024-35348079)
chr2 (342-392)||(35374524-35374574)
chr2 (86-118)||(35372014-35372046)


Alignment Details
Target: chr2 (Bit Score: 151; Significance: 8e-80; HSPs: 16)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 151; E-Value: 8e-80
Query Start/End: Original strand, 78 - 293
Target Start/End: Complemental strand, 35368725 - 35368516
Alignment:
Q  78 ggcctttgactaaccaataaatattcatagcaaaatgaatcgaatcgaatcaacttgtcgcgtgttccactttatatgttctatacatccattatatgca 177  Q
    ||||||||| |||||||||||||||||||||||||   || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35368725 ggcctttgaataaccaataaatattcatagcaaaa---at-gaatcgaatcaacttgtcgcgtgttccactttatatgttctatacatccattatatgca 35368630  T
Q  178 tccactcaaacattctattttgtcaatattcttgattcttagctgctatttccaacgtgtatgctgaattgtaaagacaattttgccaatgtggctgcac 277  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||||||||| | || ||||||||||||||||||  |||||||||||||||| |    
T  35368629 tccactcaaacattctattttgtcaatattcttgattctttgctgctatttccaacatttaagctgaattgtaaagacaa--ttgccaatgtggctgccc 35368532  T
Q  278 aagatcccattacaca 293  Q
    || || ||||||||||    
T  35368531 aatatgccattacaca 35368516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 118; E-Value: 4e-60
Query Start/End: Original strand, 175 - 344
Target Start/End: Complemental strand, 35341188 - 35341010
Alignment:
Q  175 gcatccactcaaacattctattttgtcaatatt----cttgattcttagctgctatttccaacgtgtatgctgaattgtaaagacaattttgccaatgtg 270  Q
    |||||||||||||||||||||||||||||||||    ||||| |||  ||||||  ||||||||||||||||||||||||||||||||||||||||||||    
T  35341188 gcatccactcaaacattctattttgtcaatattaattcttgaatctatgctgcttcttccaacgtgtatgctgaattgtaaagacaattttgccaatgtg 35341089  T
Q  271 gctgcacaagatccc-----attacacaagcaagcaattagcgatgcacacacctgaagcaatattacacacttcctgt 344  Q
    |||||||||||||||     |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  35341088 gctgcacaagatcccattatattacacaagcaagcaatgagcgatgcacacacctgaagcaatattacacacttcctgt 35341010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 96; E-Value: 6e-47
Query Start/End: Original strand, 145 - 340
Target Start/End: Complemental strand, 35356183 - 35355993
Alignment:
Q  145 cactttatatgttctatacatccattatatgcatccactcaaacattctattttgtcaatattcttgattcttagctgctatttccaacgtgtatgctga 244  Q
    ||||||||||||||||  |||||||||   |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  35356183 cactttatatgttcta--catccattaa--gcatccactcaaacattctattttgtcaatattcttgattcttagctgctatttccaacgtgtaagctga 35356088  T
Q  245 at-tgtaaagacaattttgccaatgtggctgcacaagatcccattacacaagcaagcaattagcgatgcacacacctgaagcaatattacacacttc 340  Q
    || |||||||||||  ||||||||||||||||||||||| | |||||||| ||| ||| | ||  |||| ||||||| ||||||   ||||||||||    
T  35356087 atgtgtaaagacaa--ttgccaatgtggctgcacaagattctattacacatgcaggcactgaggtatgctcacaccttaagcaaacatacacacttc 35355993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 96; E-Value: 6e-47
Query Start/End: Original strand, 174 - 340
Target Start/End: Complemental strand, 35374784 - 35374621
Alignment:
Q  174 tgcatccactcaaacattctattttgtcaatattcttgattcttagctgctatttccaacgtgtatgctgaattgtaaagacaattttgccaatgtggct 273  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||  ||||||||||||||    
T  35374784 tgcatccactcaaacattctattttgtcaatattcttgattcttagctgctatttccaacgtgtatgctgaa-tgtaaagacaa--ttgccaatgtggct 35374688  T
Q  274 gcacaagatcccattacacaagcaagcaattagcgatgcacacacctgaagcaatattacacacttc 340  Q
    ||||||||| | |||||||| ||| ||| | ||  |||| ||||||| ||||||   ||||||||||    
T  35374687 gcacaagattctattacacatgcaggcactgaggtatgctcacaccttaagcaaacatacacacttc 35374621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 167 - 293
Target Start/End: Original strand, 35343134 - 35343258
Alignment:
Q  167 cattatatgcatccactcaaacattctattttgtcaatattcttgattcttagctgctatttccaacgtgtatgctgaattgtaaagacaattttgccaa 266  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| | || ||||||||||||||||||  |||||||    
T  35343134 cattatatgcatccactcaaacattctattttgtcaatattcttgattctttgctgctatttccaacatttaagctgaattgtaaagacaa--ttgccaa 35343231  T
Q  267 tgtggctgcacaagatcccattacaca 293  Q
    ||||||||| ||| || ||||||||||    
T  35343232 tgtggctgcccaatatgccattacaca 35343258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 166 - 327
Target Start/End: Complemental strand, 35336021 - 35335863
Alignment:
Q  166 ccattatatgcatccactcaaacattctattttgtcaatattcttgattcttagctgctatttccaacgtgtatgctgaattgtaaagacaattttgcca 265  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||||| ||| || ||||||||||||| | ||||||||||||||||  ||||||    
T  35336021 ccattatatgcatccactcaaacattttattttgtcaatattcttgattctttgcttct-tttccaacgtgtaagttgaattgtaaagacaa--ttgcca 35335925  T
Q  266 atgtggctgcacaagatcccattacacaagcaagcaattagcgatgcacacacctgaagcaa 327  Q
    |||||||| |||||||| |||||||||| ||| |||   ||| |||| ||||||| ||||||    
T  35335924 atgtggctacacaagatgccattacacatgcaggcaccgagccatgctcacaccttaagcaa 35335863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 168 - 327
Target Start/End: Complemental strand, 35346532 - 35346378
Alignment:
Q  168 attatatgcatccactcaaacattctattttgtcaatattcttgattcttagctgctatttccaacgtgtatgctgaattgtaaagacaattttgccaat 267  Q
    |||||||||||||||||||||||||||||| ||   |||||||||||||  |||||  ||||||||||||| ||||||||||||||||||  ||||||||    
T  35346532 attatatgcatccactcaaacattctatttggt---tattcttgattctatgctgcattttccaacgtgtaagctgaattgtaaagacaa--ttgccaat 35346438  T
Q  268 gtggctgcacaagatcccattacacaagcaagcaattagcgatgcacacacctgaagcaa 327  Q
    ||||||||||||||||||||| |||| ||| |||   ||| |||| ||||||| ||||||    
T  35346437 gtggctgcacaagatcccattgcacatgcaggcatcgagccatgctcacaccttaagcaa 35346378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 168 - 343
Target Start/End: Complemental strand, 35351605 - 35351427
Alignment:
Q  168 attatatgcatccactcaaacattctattttgtcaatattcttgattctta-----gctgctatttccaacgtgtatgctgaattgtaaagacaattttg 262  Q
    ||||||||||||||||||||||||| ||||| ||||||||||||||||||      ||||||  |||||||||| ||||||| || |||| ||||||  |    
T  35351605 attatatgcatccactcaaacattcgattttttcaatattcttgattctttaatttgctgcttcttccaacgtgcatgctgacttataaaaacaatt--g 35351508  T
Q  263 ccaatgtggctgcacaagatcccattacacaagcaagcaattagcgatgcacacacctgaagcaatattacacacttcctg 343  Q
    |||||||||||||||||||| |||||||||| || ||||  |||| |||| |||||||  |||||   |||||||||||||    
T  35351507 ccaatgtggctgcacaagattccattacacatgctagcacgtagccatgctcacacctttagcaaagatacacacttcctg 35351427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 168 - 340
Target Start/End: Original strand, 35347807 - 35347983
Alignment:
Q  168 attatatgcatccactcaaacattctattttgtcaatattcttgattcttagctgctatttcca-acgtg----tatgctgaattgtaaagacaattttg 262  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||| ||| || |||||| |||||    |||||||||||||| ||||||  |||    
T  35347807 attatatgcatccactcaaacattctattttgtcaatattcttgagtctttgcttct-tttccatacgtgtatatatgctgaattgtagagacaa--ttg 35347903  T
Q  263 ccaatgtggctgcacaagatccc--attacacaagcaagcaattagcgatgcacacacctgaagcaatattacacacttc 340  Q
    ||||||||||||||||||| |||  |||||||| ||| |||  |||| |||| || |||| ||||||  |||||||||||    
T  35347904 ccaatgtggctgcacaagaccccatattacacatgcaggcacgtagccatgctcataccttaagcaaacttacacacttc 35347983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 166 - 340
Target Start/End: Complemental strand, 35364830 - 35364657
Alignment:
Q  166 ccattatatgcatccactcaaaca-ttctattttgtcaatattcttgattcttagctgctatttccaacgtgtatgctgaattgtaaagacaattttgcc 264  Q
    |||||||||||||||||| ||| | || ||||||  || ||||||||||||||  || || || ||||| |||| |||||||||||||||||| |  |||    
T  35364830 ccattatatgcatccactaaaaaaattatattttcccattattcttgattcttttcttcttttcccaacatgtacgctgaattgtaaagacaaat--gcc 35364733  T
Q  265 aatgtggctgcacaagatcccattacacaagcaagcaattagcgatgcacacacctgaagcaatattacacacttc 340  Q
    ||||||||||||||||||||||||||||| ||||||||  ||| |||| ||||||| ||||||   ||||||||||    
T  35364732 aatgtggctgcacaagatcccattacacatgcaagcaaggagccatgctcacaccttaagcaaacatacacacttc 35364657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 342 - 392
Target Start/End: Complemental strand, 35371790 - 35371740
Alignment:
Q  342 tgttatatataacacacaaactctcccattctaactcaaacacaactcaac 392  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  35371790 tgttatatataacacacaaactctccaattctaactcaaacacaactcaac 35371740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 186 - 340
Target Start/End: Complemental strand, 35371983 - 35371834
Alignment:
Q  186 aacattctattttgtcaatattcttgattcttagctgctatttccaacgtgtatgctgaattgtaaagacaattttgccaatgtggctgcacaagatccc 285  Q
    |||||||||||| ||||   |||||||||||| | |||| ||  ||||||||| ||||||||||||||| || |  |||||||  |||||||||||||||    
T  35371983 aacattctatttagtca---ttcttgattctttgttgcttttatcaacgtgtaagctgaattgtaaagagaaat--gccaatgatgctgcacaagatccc 35371889  T
Q  286 attacacaagcaagcaattagcgatgcacacacctgaagcaatattacacacttc 340  Q
    |||||||| | ||||||  ||| |||| ||||||| ||||||   ||||||||||    
T  35371888 attacacatggaagcaaggagccatgctcacaccttaagcaaacatacacacttc 35371834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 342 - 392
Target Start/End: Complemental strand, 35355947 - 35355897
Alignment:
Q  342 tgttatatataacacacaaactctcccattctaactcaaacacaactcaac 392  Q
    |||||||||||||||||||||||||| || |||||||||||||||||||||    
T  35355947 tgttatatataacacacaaactctccaatcctaactcaaacacaactcaac 35355897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 337 - 392
Target Start/End: Original strand, 35348024 - 35348079
Alignment:
Q  337 cttcctgttatatataacacacaaactctcccattctaactcaaacacaactcaac 392  Q
    |||| |||||||||||||||||||||||||| || |||||||||||||| ||||||    
T  35348024 cttcttgttatatataacacacaaactctccaatcctaactcaaacacagctcaac 35348079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 342 - 392
Target Start/End: Complemental strand, 35374574 - 35374524
Alignment:
Q  342 tgttatatataacacacaaactctcccattctaactcaaacacaactcaac 392  Q
    |||||||||||||||||||||||||| || |||||||||||||| ||||||    
T  35374574 tgttatatataacacacaaactctccaatcctaactcaaacacagctcaac 35374524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 86 - 118
Target Start/End: Complemental strand, 35372046 - 35372014
Alignment:
Q  86 actaaccaataaatattcatagcaaaatgaatc 118  Q
    ||||||||||||| |||||||||||||||||||    
T  35372046 actaaccaataaaaattcatagcaaaatgaatc 35372014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University