View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3885_low_8 (Length: 216)
Name: NF3885_low_8
Description: NF3885
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3885_low_8 |
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Alignment Details
Target: chr3 (Bit Score: 172; Significance: 1e-92; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 172; E-Value: 1e-92
Query Start/End: Original strand, 18 - 197
Target Start/End: Original strand, 41312624 - 41312803
Alignment:
| Q |
18 |
tatatatgtgctggggtgttaacatgaatcaagaagaattatacataaatagtggactaaaatgcacactcctgttactagtagtagtgacatgaagtca |
117 |
Q |
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| T |
41312624 |
tatatatgtgccggggggttaacatgaatcaagaagaattatacataaatagtggactaaaatgcacactcctgttactagtagtagtgacatgaagtca |
41312723 |
T |
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| Q |
118 |
ttgtctcagaaaaatagtgatcagaagtcatgaaccatgcgtaaacagtgagcttattagtttaagggttttgaattatg |
197 |
Q |
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| T |
41312724 |
ttgtctcagaaaaatagtgatcagaagtcatgaaccatgcgtaaacagtgagcttattagtttaagggttttgaattatg |
41312803 |
T |
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Target: chr8 (Bit Score: 93; Significance: 2e-45; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 56 - 197
Target Start/End: Original strand, 16308008 - 16308136
Alignment:
| Q |
56 |
ttatacataaatagtggactaaaatgcacactcctgttactagtagtagtgacatgaagtcattgtctcagaaaaatagtgatcagaagtcatgaaccat |
155 |
Q |
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| T |
16308008 |
ttatacataaatagtggactaaaatgcacactcctgttactagtagtagtgacatg---------tctcagaaaaatagtgatcagaagtca----ccat |
16308094 |
T |
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| Q |
156 |
gcgtaaacagtgagcttattagtttaagggttttgaattatg |
197 |
Q |
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| T |
16308095 |
gcgtaaacagtgagcttattagtttaagggttttgaattatg |
16308136 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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