View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3886_high_3 (Length: 313)
Name: NF3886_high_3
Description: NF3886
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3886_high_3 |
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Alignment Details
Target: chr6 (Bit Score: 212; Significance: 1e-116; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 12 - 298
Target Start/End: Complemental strand, 29001269 - 29000986
Alignment:
| Q |
12 |
gattattctaagacatttggagtttgagtctaggtatgaaattaggatgtttggtttttatagaagagagaacaagaagcttgtgaagataggaaggttt |
111 |
Q |
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| T |
29001269 |
gattattttaaaacgtttggagtttgagtctgggtatgaaattaggatgtttggtttttatagaagagggaacaagaaacttgggaagataggaaggttt |
29001170 |
T |
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| Q |
112 |
catggtgaatttagttagttaggacttaggatcattgaataaaaaagggagagaaaacaagtgaaagaaataagnnnnnnnnnaaggtagagagagcttt |
211 |
Q |
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| T |
29001169 |
catggtgaatttagttagttaggacttaggatcattgaataaaaaagggagagaaaacaagtgaaagaaataag-ttttttttaaggt--agagagcttt |
29001073 |
T |
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| Q |
212 |
caagtactggtgttttcaggtgctgtggttagaatgagatagagccaagaaaaattccataaatattgggaagggtgggtggtttat |
298 |
Q |
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| T |
29001072 |
caagtactagtgttttcaggtgctgtggttagaatgagatagagccaagaaaaattccataaatattgggaagggtgggtggtttat |
29000986 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 195 - 299
Target Start/End: Complemental strand, 28961395 - 28961291
Alignment:
| Q |
195 |
aaggtagagagagctttcaagtactggtgttttcaggtgctgtggttagaatgagatagagccaagaaaaattccataaatattgggaagggtgggtggt |
294 |
Q |
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| T |
28961395 |
aaggtagagatagctttcaagtaccaatactttcaggtgctgcggttagaatgagatagagttaacataaattccataaatattgggaagggtgggtggt |
28961296 |
T |
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| Q |
295 |
ttatg |
299 |
Q |
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||||| |
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| T |
28961295 |
ttatg |
28961291 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 137 - 185
Target Start/End: Complemental strand, 28961461 - 28961412
Alignment:
| Q |
137 |
ttaggatcattgaataaaaaag-ggagagaaaacaagtgaaagaaataag |
185 |
Q |
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| T |
28961461 |
ttaggattattgaataaaaaaaaggagagaaaacaagtgaaagatataag |
28961412 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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