View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3886_low_2 (Length: 394)
Name: NF3886_low_2
Description: NF3886
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3886_low_2 |
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Alignment Details
Target: chr1 (Bit Score: 230; Significance: 1e-127; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 1 - 305
Target Start/End: Complemental strand, 7668350 - 7668032
Alignment:
| Q |
1 |
catatatgaagcaagtatttcctagggttgctcctgctactgctagctataaagtagccctaacaggagcagtcccaagtgtgtgtaatgctagctgttt |
100 |
Q |
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| T |
7668350 |
catatatgaagcaagtatttcctagggttgctcctgctactgctagctataaagtagccctaacaggagcagtcccaagtgtgtgtaatgctagctgttt |
7668251 |
T |
|
| Q |
101 |
aggattaatgtttagggctagggctgctcctgctactgctagggct---------------actttatatcaaaatgtatgtatttccttaagaaaatgg |
185 |
Q |
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| T |
7668250 |
aggattaatgtttagggctagg-ctgctcctgctactgctagggctgctcctgctagggctactttatatcaaaatgtacgtatttccttaagaaaatgg |
7668152 |
T |
|
| Q |
186 |
cgcacaaaataactctcatttttcaccctgcaggcccaagtttgtgtaatgctagatgtttaggattaatgtttaatgtgcaatgaggtttgttaatttc |
285 |
Q |
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||||||||||||||||||||||||||||||||| ||||||| ||||||||||||| |||||||||||||||||||||||| ||||| || | |||||||| |
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| T |
7668151 |
cgcacaaaataactctcatttttcaccctgcagtcccaagtgtgtgtaatgctagctgtttaggattaatgtttaatgtgtaatgaagtcttttaatttc |
7668052 |
T |
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| Q |
286 |
ctcaagcatatattttcttg |
305 |
Q |
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|||||||||||||||||||| |
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| T |
7668051 |
ctcaagcatatattttcttg |
7668032 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 152 - 305
Target Start/End: Complemental strand, 7088430 - 7088277
Alignment:
| Q |
152 |
atatcaaaatgtatgtatttccttaagaaaatggcgcacaaaataactctcatttttcaccctgcaggcccaagtttgtgtaatgctagatgtttaggat |
251 |
Q |
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| T |
7088430 |
atatcaaaatgtacatatttccttaagaaaatggtgcacaaaataactgtcatttttcaccctgcaggcccaagtttgtgtaatgctagatgtttaggat |
7088331 |
T |
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| Q |
252 |
taatgtttaatgtgcaatgaggtttgttaatttcctcaagcatatattttcttg |
305 |
Q |
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| T |
7088330 |
taatgtttaatgtgcaatgaagtttgttaatttcctcaagcatatattttcttg |
7088277 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 4 - 58
Target Start/End: Complemental strand, 7089007 - 7088953
Alignment:
| Q |
4 |
atatgaagcaagtatttcctagggttgctcctgctactgctagctataaagtagc |
58 |
Q |
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|||||||||||||| |||| |||| |||||||||| |||||| |||||||||||| |
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| T |
7089007 |
atatgaagcaagtacttccaagggctgctcctgctcctgctaactataaagtagc |
7088953 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 69 - 114
Target Start/End: Complemental strand, 7088367 - 7088322
Alignment:
| Q |
69 |
gcagtcccaagtgtgtgtaatgctagctgtttaggattaatgttta |
114 |
Q |
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|||| ||||||| ||||||||||||| ||||||||||||||||||| |
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| T |
7088367 |
gcaggcccaagtttgtgtaatgctagatgtttaggattaatgttta |
7088322 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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