View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3886_low_4 (Length: 285)
Name: NF3886_low_4
Description: NF3886
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3886_low_4 |
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Alignment Details
Target: chr2 (Bit Score: 216; Significance: 1e-118; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 6 - 272
Target Start/End: Original strand, 38693925 - 38694196
Alignment:
| Q |
6 |
aattaggatactccagctgtgccaattggaagaagccccagggttttacatccttctaatttctaagattggcagggctttatatatcctttatagaatt |
105 |
Q |
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| T |
38693925 |
aattaggatactctagctgtgccaatgggaagaagccccagggtttgacatccttctaatttctaagattggcagggctttatatatcctttatagaatt |
38694024 |
T |
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| Q |
106 |
caacttattaaagttgagaacttttcataatctgaattatcattgc-----ttttattatgttatagtaacccttgaccaattccacaaagcagatcata |
200 |
Q |
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| T |
38694025 |
caacttattcaagttgagaacttttcataatctgaattatcattgcttttattttattatgttatagtaacccttgaccgattccacaaggcagatcata |
38694124 |
T |
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| Q |
201 |
gaggtgctcacaattattcccttatatgattctaagatcgttgttgcattttatcgttttcctttacagtga |
272 |
Q |
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| T |
38694125 |
gaggtgctcacaattattcccttgtatgattctaagatcattgttgcattttatcgttttcctttccagtga |
38694196 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 73; Significance: 2e-33; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 66 - 196
Target Start/End: Complemental strand, 9820835 - 9820703
Alignment:
| Q |
66 |
ttctaagattggcagggctttatatatcctttatagaattcaacttatta-aagttga-gaacttttcataatctgaattatcattgcttttattatgtt |
163 |
Q |
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| T |
9820835 |
ttctaagattagcagggctttatatatcctttatagcattcaaattattagaatttgaagaacttttcctaacctgagtgatcattgcttttattatgtt |
9820736 |
T |
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| Q |
164 |
atagtaacccttgaccaattccacaaagcagat |
196 |
Q |
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| T |
9820735 |
atggtaacccttgactgattccacaaagcagat |
9820703 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 8 - 49
Target Start/End: Complemental strand, 9820927 - 9820886
Alignment:
| Q |
8 |
ttaggatactccagctgtgccaattggaagaagccccagggt |
49 |
Q |
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| T |
9820927 |
ttaggatactccagctgtgccaattgggagaagccctagggt |
9820886 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 59; Significance: 5e-25; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 66 - 218
Target Start/End: Complemental strand, 38875039 - 38874879
Alignment:
| Q |
66 |
ttctaagattggcagggctttatatatcctttatagaattcaacttattaaagttgaga---acttttcataatctgaattatcattg--------cttt |
154 |
Q |
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| T |
38875039 |
ttctaagattggcagggctttatatatcctttataggattcaaattattacaattgatagaaatttttctttatctgagtgatcattgtttttgtgcttt |
38874940 |
T |
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| Q |
155 |
tattatgttatagtaacccttgaccaattccacaaagcagatcatagaggtgctcacaattatt |
218 |
Q |
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| T |
38874939 |
tattatgttatggtaacccttgaccaattccacaaagcag---atagaggtgcacacaattatt |
38874879 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 8 - 64
Target Start/End: Complemental strand, 38875131 - 38875076
Alignment:
| Q |
8 |
ttaggatactccagctgtgccaattggaagaagccccagggttttacatccttctaa |
64 |
Q |
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| T |
38875131 |
ttaggatactccatctgtaccaattggaagaagccccaggg-ttgacatccttctaa |
38875076 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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