View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3887_high_12 (Length: 221)

Name: NF3887_high_12
Description: NF3887
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3887_high_12
NF3887_high_12
[»] chr8 (17 HSPs)
chr8 (1-203)||(35740088-35740301)
chr8 (1-123)||(38815177-38815299)
chr8 (1-123)||(22589438-22589560)
chr8 (1-115)||(18804504-18804617)
chr8 (1-74)||(3821156-3821229)
chr8 (1-86)||(24124948-24125033)
chr8 (3-86)||(6592496-6592578)
chr8 (1-94)||(3187882-3187974)
chr8 (14-115)||(4699762-4699863)
chr8 (1-37)||(40223505-40223541)
chr8 (1-116)||(39434557-39434672)
chr8 (2-95)||(43823900-43823993)
chr8 (7-95)||(5329710-5329798)
chr8 (1-35)||(500199-500233)
chr8 (3-93)||(6618198-6618287)
chr8 (30-92)||(8882258-8882320)
chr8 (1-123)||(37514104-37514226)
[»] chr3 (21 HSPs)
chr3 (1-123)||(26856864-26856986)
chr3 (1-115)||(38978901-38979015)
chr3 (1-123)||(32546678-32546800)
chr3 (1-86)||(53785629-53785714)
chr3 (3-94)||(39583333-39583424)
chr3 (1-123)||(4763895-4764016)
chr3 (1-95)||(13582421-13582515)
chr3 (1-94)||(37133101-37133194)
chr3 (5-93)||(38145969-38146057)
chr3 (1-97)||(52411993-52412089)
chr3 (1-123)||(44716-44841)
chr3 (4-123)||(26772641-26772760)
chr3 (1-94)||(52741614-52741707)
chr3 (1-91)||(5338561-5338648)
chr3 (1-123)||(44198650-44198772)
chr3 (21-92)||(38671002-38671073)
chr3 (1-86)||(3443414-3443499)
chr3 (1-45)||(51234577-51234621)
chr3 (1-92)||(4472976-4473067)
chr3 (24-123)||(4669788-4669887)
chr3 (1-69)||(46940875-46940943)
[»] chr7 (24 HSPs)
chr7 (1-92)||(27521385-27521476)
chr7 (1-93)||(48539094-48539186)
chr7 (1-94)||(4501171-4501264)
chr7 (1-123)||(45613944-45614066)
chr7 (1-94)||(21326940-21327033)
chr7 (1-115)||(982840-982954)
chr7 (1-93)||(5972318-5972410)
chr7 (1-92)||(28517389-28517480)
chr7 (1-94)||(5825185-5825278)
chr7 (1-94)||(19277203-19277298)
chr7 (1-93)||(24527502-24527594)
chr7 (14-92)||(5714954-5715032)
chr7 (9-94)||(23037457-23037542)
chr7 (10-115)||(43333941-43334046)
chr7 (4-123)||(25187036-25187155)
chr7 (2-73)||(30216161-30216232)
chr7 (1-92)||(43856788-43856879)
chr7 (1-123)||(40726582-40726704)
chr7 (1-74)||(10905050-10905123)
chr7 (1-122)||(22197871-22197991)
chr7 (1-122)||(22239830-22239950)
chr7 (1-81)||(42295286-42295366)
chr7 (1-92)||(41117872-41117963)
chr7 (29-93)||(27027760-27027824)
[»] chr4 (26 HSPs)
chr4 (1-123)||(30940834-30940956)
chr4 (1-93)||(16955373-16955465)
chr4 (1-92)||(600794-600885)
chr4 (1-92)||(4419177-4419268)
chr4 (5-123)||(50464402-50464520)
chr4 (1-92)||(34107798-34107889)
chr4 (1-84)||(56462208-56462291)
chr4 (1-123)||(3329879-3330001)
chr4 (1-94)||(53170424-53170518)
chr4 (1-123)||(39001280-39001402)
chr4 (1-115)||(53619477-53619591)
chr4 (26-122)||(50442606-50442702)
chr4 (1-92)||(55933562-55933653)
chr4 (1-123)||(50001028-50001150)
chr4 (1-86)||(23255633-23255718)
chr4 (58-93)||(50463102-50463137)
chr4 (17-115)||(23233232-23233330)
chr4 (4-94)||(25504207-25504297)
chr4 (1-123)||(42455709-42455831)
chr4 (1-46)||(6865922-6865967)
chr4 (1-34)||(32312813-32312846)
chr4 (1-81)||(52403868-52403946)
chr4 (58-114)||(12053359-12053415)
chr4 (30-86)||(40005289-40005345)
chr4 (1-93)||(48657017-48657109)
chr4 (2-38)||(54190954-54190990)
[»] chr2 (18 HSPs)
chr2 (1-95)||(13413262-13413356)
chr2 (1-84)||(41868010-41868093)
chr2 (1-74)||(17344570-17344643)
chr2 (1-122)||(18745056-18745177)
chr2 (4-123)||(9685520-9685639)
chr2 (1-115)||(4413168-4413282)
chr2 (1-93)||(19161885-19161977)
chr2 (1-92)||(16351946-16352037)
chr2 (1-48)||(20142827-20142874)
chr2 (61-123)||(3208406-3208468)
chr2 (1-75)||(44686347-44686421)
chr2 (1-94)||(28224912-28225005)
chr2 (1-48)||(23485038-23485085)
chr2 (1-40)||(34814920-34814959)
chr2 (65-115)||(30602380-30602430)
chr2 (1-94)||(27502274-27502367)
chr2 (127-176)||(40404316-40404365)
chr2 (16-48)||(20142871-20142903)
[»] chr1 (22 HSPs)
chr1 (1-123)||(22346778-22346900)
chr1 (1-94)||(20259899-20259992)
chr1 (1-94)||(21472915-21473008)
chr1 (1-94)||(24177613-24177706)
chr1 (1-97)||(2898611-2898707)
chr1 (1-114)||(31737425-31737537)
chr1 (54-122)||(7483769-7483836)
chr1 (4-72)||(45659751-45659819)
chr1 (6-80)||(11128361-11128435)
chr1 (1-74)||(4862091-4862164)
chr1 (1-94)||(28041229-28041322)
chr1 (9-123)||(868513-868625)
chr1 (1-92)||(34644480-34644571)
chr1 (1-46)||(29169895-29169940)
chr1 (54-123)||(30688440-30688509)
chr1 (54-94)||(1114023-1114063)
chr1 (6-93)||(35550182-35550269)
chr1 (14-93)||(45835301-45835380)
chr1 (54-123)||(5453978-5454047)
chr1 (1-70)||(38731545-38731614)
chr1 (1-113)||(2764372-2764484)
chr1 (1-45)||(35387758-35387802)
[»] scaffold0009 (1 HSPs)
scaffold0009 (1-123)||(102989-103111)
[»] chr6 (12 HSPs)
chr6 (1-94)||(32115630-32115723)
chr6 (17-115)||(3137365-3137463)
chr6 (1-91)||(4166024-4166114)
chr6 (1-91)||(4206698-4206788)
chr6 (8-95)||(959492-959579)
chr6 (1-123)||(17249407-17249529)
chr6 (5-93)||(28543310-28543398)
chr6 (1-85)||(28625852-28625935)
chr6 (1-40)||(45779-45818)
chr6 (54-123)||(7749364-7749433)
chr6 (1-82)||(24016261-24016342)
chr6 (1-94)||(34304408-34304501)
[»] chr5 (15 HSPs)
chr5 (1-94)||(2566197-2566290)
chr5 (1-92)||(22188757-22188848)
chr5 (8-92)||(32269906-32269990)
chr5 (1-93)||(42921611-42921702)
chr5 (1-123)||(25663134-25663256)
chr5 (1-123)||(35310331-35310453)
chr5 (1-95)||(37873740-37873834)
chr5 (10-95)||(23023506-23023591)
chr5 (8-115)||(15292134-15292241)
chr5 (59-123)||(11005761-11005825)
chr5 (6-77)||(3114247-3114318)
chr5 (4-83)||(15832985-15833064)
chr5 (5-48)||(38875596-38875639)
chr5 (6-92)||(16017087-16017173)
chr5 (1-94)||(430514-430607)
[»] scaffold1768 (1 HSPs)
scaffold1768 (3-97)||(288-382)
[»] scaffold0148 (1 HSPs)
scaffold0148 (1-115)||(33141-33255)
[»] scaffold0490 (1 HSPs)
scaffold0490 (1-48)||(6292-6339)
[»] scaffold0406 (1 HSPs)
scaffold0406 (52-123)||(6771-6842)
[»] scaffold0470 (1 HSPs)
scaffold0470 (3-93)||(7516-7605)
[»] scaffold0031 (1 HSPs)
scaffold0031 (2-40)||(49381-49419)
[»] scaffold0309 (1 HSPs)
scaffold0309 (53-125)||(5205-5277)


Alignment Details
Target: chr8 (Bit Score: 129; Significance: 6e-67; HSPs: 17)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 129; E-Value: 6e-67
Query Start/End: Original strand, 1 - 203
Target Start/End: Original strand, 35740088 - 35740301
Alignment:
Q  1 tacatagagttcaaaaggtcatgcataacaatgtcatgtcccctaggtttgtaaatgttgt----gtt---tac---gaggatttgttttgccatctaaa 90  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    ||    |||   |||||||||||||||||||||||    
T  35740088 tacatagagttcaaaaagtcatgcataacaatgtcatgtcccctaggtttgtaaatgttgtaaatgtcccctacatagaggatttgttttgccatctaaa 35740187  T
Q  91 aaggcttcgcaacgcagcttgttgctcgcttgcata-ttttaaaaattggatcggtcatcgatttggtaaggtcactgagtcattggttcaaccactggg 189  Q
    ||||||||||||||||||||||| |||||||||||| |||||||||| | | ||||||||||||||||||||||||||||||||||||||||||||| |     
T  35740188 aaggcttcgcaacgcagcttgttactcgcttgcatagttttaaaaatcgaaccggtcatcgatttggtaaggtcactgagtcattggttcaaccactaga 35740287  T
Q  190 tcattggtctctac 203  Q
    ||||||||||||||    
T  35740288 tcattggtctctac 35740301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 1 - 123
Target Start/End: Complemental strand, 38815299 - 38815177
Alignment:
Q  1 tacatagagttcaaaaggtcatgcataacaatgtcatgtcccctaggtttgtaaatgttgtgtttacgaggatttgttttgccatctaaaaaggcttcgc 100  Q
    ||||||||||||||| ||||||||||| |||||||||||| |||||||   | ||||||||||||||||||||| ||||| ||||| |||||||||| ||    
T  38815299 tacatagagttcaaagggtcatgcatagcaatgtcatgtctcctaggtccatgaatgttgtgtttacgaggattggtttttccatccaaaaaggcttagc 38815200  T
Q  101 aacgcagcttgttgctcgcttgc 123  Q
      ||||||||||||| |||||||    
T  38815199 ggcgcagcttgttgcccgcttgc 38815177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 1 - 123
Target Start/End: Original strand, 22589438 - 22589560
Alignment:
Q  1 tacatagagttcaaaaggtcatgcataacaatgtcatgtcccctaggtttgtaaatgttgtgtttacgaggatttgttttgccatctaaaaaggcttcgc 100  Q
    ||||||||||||||||||||||||||| |||||||||||| | ||||| | | ||||||||||| ||||||||| ||||||||||| |||||||  | ||    
T  22589438 tacatagagttcaaaaggtcatgcatagcaatgtcatgtctcataggtctatgaatgttgtgttcacgaggattggttttgccatccaaaaaggtctagc 22589537  T
Q  101 aacgcagcttgttgctcgcttgc 123  Q
      ||||||||||||| |||||||    
T  22589538 ggcgcagcttgttgcccgcttgc 22589560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 1 - 115
Target Start/End: Complemental strand, 18804617 - 18804504
Alignment:
Q  1 tacatagagttcaaaaggtcatgcataacaatgtcatgtcccctaggtttgtaaatgttgtgtttacgaggatttgttttgccatctaaaaaggcttcgc 100  Q
    |||||||| ||||||||||||||||||||||||||||| | |||||| ||   | |||| |||||||||||||| ||||||||||| |||||||  | ||    
T  18804617 tacatagatttcaaaaggtcatgcataacaatgtcatgactcctagg-ttcagagtgttttgtttacgaggattggttttgccatccaaaaaggtctagc 18804519  T
Q  101 aacgcagcttgttgc 115  Q
      |||||||||||||    
T  18804518 ggcgcagcttgttgc 18804504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 1 - 74
Target Start/End: Complemental strand, 3821229 - 3821156
Alignment:
Q  1 tacatagagttcaaaaggtcatgcataacaatgtcatgtcccctaggtttgtaaatgttgtgtttacgaggatt 74  Q
    ||||||||||||||| ||| ||||||| |||||||||||| ||||||||  |||||||| ||||||||||||||    
T  3821229 tacatagagttcaaagggtaatgcatagcaatgtcatgtctcctaggttcataaatgttatgtttacgaggatt 3821156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 1 - 86
Target Start/End: Complemental strand, 24125033 - 24124948
Alignment:
Q  1 tacatagagttcaaaaggtcatgcataacaatgtcatgtcccctaggtttgtaaatgttgtgtttacgaggatttgttttgccatc 86  Q
    |||||| |||||||||||||||||||| |||||||||||| | |||||   | |||||||||||||| |||||| |||||||||||    
T  24125033 tacataaagttcaaaaggtcatgcatagcaatgtcatgtctcataggtccatgaatgttgtgtttacaaggattagttttgccatc 24124948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 3 - 86
Target Start/End: Complemental strand, 6592578 - 6592496
Alignment:
Q  3 catagagttcaaaaggtcatgcataacaatgtcatgtcccctaggtttgtaaatgttgtgtttacgaggatttgttttgccatc 86  Q
    |||||||||||||||||||||||||  ||||||||||| | ||||||  | ||||||||||||||||| ||| |||||| ||||    
T  6592578 catagagttcaaaaggtcatgcatat-aatgtcatgtctcataggttcatgaatgttgtgtttacgagtattggttttgtcatc 6592496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 94
Target Start/End: Complemental strand, 3187974 - 3187882
Alignment:
Q  1 tacatagagttcaaaaggtcatgcataacaatgtcatgtcccctaggtttgtaaatgttgtgtttacgaggatttgttttgccatctaaaaagg 94  Q
    |||||||||| |||| ||| ||||||| |||||| ||||| |||||||   | ||||||||||||||||| ||| ||||||||||| |||||||    
T  3187974 tacatagagt-caaagggttatgcatagcaatgttatgtctcctaggtccatgaatgttgtgtttacgagaattggttttgccatccaaaaagg 3187882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 14 - 115
Target Start/End: Complemental strand, 4699863 - 4699762
Alignment:
Q  14 aaaggtcatgcataacaatgtcatgtcccctaggtttgtaaatgttgtgtttacgaggatttgttttgccatctaaaaaggcttcgcaacgcagcttgtt 113  Q
    |||||||||| ||| |||| | ||||| |||||||   | |||||||||||||| |||||| ||||||||||| |||||||||| |   |||||||||||    
T  4699863 aaaggtcatgaatagcaatattatgtcacctaggtccatgaatgttgtgtttacaaggattagttttgccatccaaaaaggcttagtggcgcagcttgtt 4699764  T
Q  114 gc 115  Q
    ||    
T  4699763 gc 4699762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 40223505 - 40223541
Alignment:
Q  1 tacatagagttcaaaaggtcatgcataacaatgtcat 37  Q
    |||||||||||||||||||||||||||||||||||||    
T  40223505 tacatagagttcaaaaggtcatgcataacaatgtcat 40223541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 116
Target Start/End: Complemental strand, 39434672 - 39434557
Alignment:
Q  1 tacatagagttcaaaaggtcatgcataacaatgtcatgtcccctaggtttgtaaatgttgtgtttacgaggatttgttttgccatctaaaaaggcttcgc 100  Q
    |||||||||| |||| ||| ||||||| |||||| ||||| | ||| |   | |||||||||||||||||||||  |||||||||| |||||||  | ||    
T  39434672 tacatagagtccaaagggttatgcatatcaatgtaatgtctcttagatccatgaatgttgtgtttacgaggattgattttgccatccaaaaaggtctagc 39434573  T
Q  101 aacgcagcttgttgct 116  Q
      ||||||||||||||    
T  39434572 ggcgcagcttgttgct 39434557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 2 - 95
Target Start/End: Complemental strand, 43823993 - 43823900
Alignment:
Q  2 acatagagttcaaaaggtcatgcataacaatgtcatgtcccctaggtttgtaaatgttgtgtttacgaggatttgttttgccatctaaaaaggc 95  Q
    |||||||||||||| ||||||||||| |||||||||||| || || |   | |||||||||||||||   ||| | |||| |||||||||||||    
T  43823993 acatagagttcaaatggtcatgcatagcaatgtcatgtctccgagatccattaatgttgtgtttacggcaattgggtttgtcatctaaaaaggc 43823900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 7 - 95
Target Start/End: Original strand, 5329710 - 5329798
Alignment:
Q  7 gagttcaaaaggtcatgcataacaatgtcatgtcccctaggtttgtaaatgttgtgtttacgaggatttgttttgccatctaaaaaggc 95  Q
    ||||||||| ||||||| | |||||| ||||||| |||| || | | ||||||||||||| |||||||  ||||| |||| ||||||||    
T  5329710 gagttcaaagggtcatggacaacaatatcatgtctcctatgtctatcaatgttgtgtttatgaggattaattttgacatccaaaaaggc 5329798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 500233 - 500199
Alignment:
Q  1 tacatagagttcaaaaggtcatgcataacaatgtc 35  Q
    ||||||||||||||||||||||||||| |||||||    
T  500233 tacatagagttcaaaaggtcatgcatatcaatgtc 500199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 3 - 93
Target Start/End: Complemental strand, 6618287 - 6618198
Alignment:
Q  3 catagagttcaaaaggtcatgcataacaatgtcatgtcccctaggtttgtaaatgttgtgtttacgaggatttgttttgccatctaaaaag 93  Q
    ||||| |||||||||||||||||| | ||||||||||| | |||||   | |||||| |||||||||| ||| |||||| |||| ||||||    
T  6618287 catagcgttcaaaaggtcatgcat-ataatgtcatgtctcataggtccatgaatgttatgtttacgagtattggttttgtcatccaaaaag 6618198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 30 - 92
Target Start/End: Complemental strand, 8882320 - 8882258
Alignment:
Q  30 aatgtcatgtcccctaggtttgtaaatgttgtgtttacgaggatttgttttgccatctaaaaa 92  Q
    ||||||||||| |||||||   | |||||||||||||||||||||  |||||||||| |||||    
T  8882320 aatgtcatgtctcctaggtccatgaatgttgtgtttacgaggattaattttgccatcaaaaaa 8882258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 123
Target Start/End: Complemental strand, 37514226 - 37514104
Alignment:
Q  1 tacatagagttcaaaaggtcatgcataacaatgtcatgtcccctaggtttgtaaatgttgtgtttacgaggatttgttttgccatctaaaaaggcttcgc 100  Q
    ||||||||||||||||||||||||||| |||||| | ||| | |||||   | |||||||| || |||||||||  | |||||| | |||||||  |  |    
T  37514226 tacatagagttcaaaaggtcatgcatatcaatgttacgtctcttaggtccatgaatgttgtattcacgaggattgatcttgccacccaaaaaggtctaac 37514127  T
Q  101 aacgcagcttgttgctcgcttgc 123  Q
      ||||||||||||| |||||||    
T  37514126 ggcgcagcttgttgcccgcttgc 37514104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 67; Significance: 6e-30; HSPs: 21)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 1 - 123
Target Start/End: Original strand, 26856864 - 26856986
Alignment:
Q  1 tacatagagttcaaaaggtcatgcataacaatgtcatgtcccctaggtttgtaaatgttgtgtttacgaggatttgttttgccatctaaaaaggcttcgc 100  Q
    ||||||||||||||| ||||||||||| |||||||||||| ||||||||| | ||||||||| || |||||||| ||||| ||||| |||||||| | ||    
T  26856864 tacatagagttcaaagggtcatgcatagcaatgtcatgtctcctaggtttatgaatgttgtgcttgcgaggattggttttaccatccaaaaaggcctagc 26856963  T
Q  101 aacgcagcttgttgctcgcttgc 123  Q
      |||||||||||||||||||||    
T  26856964 ggcgcagcttgttgctcgcttgc 26856986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 1 - 115
Target Start/End: Original strand, 38978901 - 38979015
Alignment:
Q  1 tacatagagttcaaaaggtcatgcataacaatgtcatgtcccctaggtttgtaaatgttgtgtttacgaggatttgttttgccatctaaaaaggcttcgc 100  Q
    |||||| |||||||||||| |||||||||||||||||||| | ||||||| | ||||||||||||||||  ||| ||||||||||| ||||||||||  |    
T  38978901 tacatatagttcaaaaggtgatgcataacaatgtcatgtctcataggtttatcaatgttgtgtttacgaaaattagttttgccatccaaaaaggcttaac 38979000  T
Q  101 aacgcagcttgttgc 115  Q
    |||||| ||||||||    
T  38979001 aacgcaacttgttgc 38979015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 1 - 123
Target Start/End: Complemental strand, 32546800 - 32546678
Alignment:
Q  1 tacatagagttcaaaaggtcatgcataacaatgtcatgtcccctaggtttgtaaatgttgtgtttacgaggatttgttttgccatctaaaaaggcttcgc 100  Q
    |||||||||||||||| ||||||||||  ||||||||||| |||||||   | ||||||||||| ||||||||| ||||||||||| |||||||  | ||    
T  32546800 tacatagagttcaaaaagtcatgcatagtaatgtcatgtctcctaggtccatgaatgttgtgttcacgaggattggttttgccatccaaaaaggtctagc 32546701  T
Q  101 aacgcagcttgttgctcgcttgc 123  Q
      ||||||||||||| |||||||    
T  32546700 ggcgcagcttgttgcccgcttgc 32546678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 1 - 86
Target Start/End: Complemental strand, 53785714 - 53785629
Alignment:
Q  1 tacatagagttcaaaaggtcatgcataacaatgtcatgtcccctaggtttgtaaatgttgtgtttacgaggatttgttttgccatc 86  Q
    ||||||||||||||||||||||||||| |||||||||||| |||||||   | |||||| |||||||||||||| |||||||||||    
T  53785714 tacatagagttcaaaaggtcatgcatagcaatgtcatgtctcctaggtccatgaatgttatgtttacgaggattggttttgccatc 53785629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 3 - 94
Target Start/End: Original strand, 39583333 - 39583424
Alignment:
Q  3 catagagttcaaaaggtcatgcataacaatgtcatgtcccctaggtttgtaaatgttgtgtttacgaggatttgttttgccatctaaaaagg 94  Q
    ||||||||||||| ||||||||||| |||||||||||| ||||||||  | ||||| |||||||||||||||  |||||||||| |||||||    
T  39583333 catagagttcaaagggtcatgcatagcaatgtcatgtctcctaggttcatgaatgtcgtgtttacgaggattgattttgccatccaaaaagg 39583424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 1 - 123
Target Start/End: Original strand, 4763895 - 4764016
Alignment:
Q  1 tacatagagttcaaaaggtcatgcataacaatgtcatgtcccctaggtttgtaaatgttgtgtttacgaggatttgttttgccatctaaaaaggcttcgc 100  Q
    ||||||||||||||||||| ||||||| |||||||||||| ||| |||   | ||||||||||||||||||||| |  |||||||| |||||||||| |     
T  4763895 tacatagagttcaaaaggttatgcatagcaatgtcatgtctcct-ggtccatgaatgttgtgtttacgaggattagaattgccatccaaaaaggcttggt 4763993  T
Q  101 aacgcagcttgttgctcgcttgc 123  Q
      |||| |||||||| |||||||    
T  4763994 ggcgcaacttgttgcccgcttgc 4764016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 1 - 95
Target Start/End: Complemental strand, 13582515 - 13582421
Alignment:
Q  1 tacatagagttcaaaaggtcatgcataacaatgtcatgtcccctaggtttgtaaatgttgtgtttacgaggatttgttttgccatctaaaaaggc 95  Q
    |||| ||||||||||||||||||||||||||||||||||| ||||||    | |||||||||||||||| ||||  ||| |||||| ||||||||    
T  13582515 tacagagagttcaaaaggtcatgcataacaatgtcatgtctcctaggaccatgaatgttgtgtttacgaagattgatttagccatccaaaaaggc 13582421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 1 - 94
Target Start/End: Original strand, 37133101 - 37133194
Alignment:
Q  1 tacatagagttcaaaaggtcatgcataacaatgtcatgtcccctaggtttgtaaatgttgtgtttacgaggatttgttttgccatctaaaaagg 94  Q
    |||||||||||| |||||||||||||| |||||||||||| |||| |||  | |||||||||||||  |||||| ||||||| ||| |||||||    
T  37133101 tacatagagttctaaaggtcatgcatagcaatgtcatgtctcctaagttaatgaatgttgtgtttataaggattggttttgcgatccaaaaagg 37133194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 5 - 93
Target Start/End: Complemental strand, 38146057 - 38145969
Alignment:
Q  5 tagagttcaaaaggtcatgcataacaatgtcatgtcccctaggtttgtaaatgttgtgtttacgaggatttgttttgccatctaaaaag 93  Q
    ||||||||||| |||||||||||||||||||||||| |||||||   | || ||||||||||||| ||||  ||||| |||||||||||    
T  38146057 tagagttcaaagggtcatgcataacaatgtcatgtctcctaggtccatgaacgttgtgtttacgatgattgattttgtcatctaaaaag 38145969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 1 - 97
Target Start/End: Original strand, 52411993 - 52412089
Alignment:
Q  1 tacatagagttcaaaaggtcatgcataacaatgtcatgtcccctaggtttgtaaatgttgtgtttacgaggatttgttttgccatctaaaaaggctt 97  Q
    ||||||||||||||| |||||||||||||||||||||||| |||||     ||||| |||||||||| | ||||  |||||||||| ||||||||||    
T  52411993 tacatagagttcaaagggtcatgcataacaatgtcatgtctcctagacccataaatattgtgtttacaatgattgattttgccatccaaaaaggctt 52412089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 1 - 123
Target Start/End: Complemental strand, 44841 - 44716
Alignment:
Q  1 tacatagagttcaaaaggtcatgcataacaatgtcatgtcccctaggtttgtaaa---tgttgtgtttacgaggatttgttttgccatctaaaaaggctt 97  Q
    ||||||||||||||||||||||||||| |||||||||||  |||||||   | ||   ||||||||| || |||||||||||||||||| |||||||  |    
T  44841 tacatagagttcaaaaggtcatgcatagcaatgtcatgtttcctaggtccatgaatgttgttgtgttcacaaggatttgttttgccatccaaaaaggtct 44742  T
Q  98 cgcaacgcagcttgttgctcgcttgc 123  Q
     ||  ||||| ||||||| |||||||    
T  44741 agcggcgcagtttgttgcccgcttgc 44716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 4 - 123
Target Start/End: Complemental strand, 26772760 - 26772641
Alignment:
Q  4 atagagttcaaaaggtcatgcataacaatgtcatgtcccctaggtttgtaaatgttgtgtttacgaggatttgttttgccatctaaaaaggcttcgcaac 103  Q
    ||||||| |||| | | |||||||||||||| ||||| |||||||   | |||||||||||||||||||||  |||||||||| |||||||  | ||  |    
T  26772760 atagagtacaaaggattatgcataacaatgttatgtctcctaggtccatgaatgttgtgtttacgaggattgattttgccatccaaaaaggtctagcggc 26772661  T
Q  104 gcagcttgttgctcgcttgc 123  Q
    |||||||||||| |||||||    
T  26772660 gcagcttgttgcccgcttgc 26772641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 1 - 94
Target Start/End: Original strand, 52741614 - 52741707
Alignment:
Q  1 tacatagagttcaaaaggtcatgcataacaatgtcatgtcccctaggtttgtaaatgttgtgtttacgaggatttgttttgccatctaaaaagg 94  Q
    ||||||||||||||||||||||||||| |||||||||||| ||||| |   |  || |||| || |||| |||||||||||||||| |||||||    
T  52741614 tacatagagttcaaaaggtcatgcatagcaatgtcatgtctcctagatccatttatcttgtattcacgaagatttgttttgccatccaaaaagg 52741707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 91
Target Start/End: Complemental strand, 5338648 - 5338561
Alignment:
Q  1 tacatagagttcaaaaggtcatgcataacaatgtcatgtcccctaggtttgtaaatgttgtgtttacgaggatttgttttgccatctaaaa 91  Q
    |||||||||||||||||||||||| || ||||||| |||| | |||||     ||||||||||||||||||||| ||||||||||| ||||    
T  5338648 tacatagagttcaaaaggtcatgcgtagcaatgtcttgtctcataggtcg---aatgttgtgtttacgaggattggttttgccatccaaaa 5338561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 123
Target Start/End: Complemental strand, 44198772 - 44198650
Alignment:
Q  1 tacatagagttcaaaaggtcatgcataacaatgtcatgtcccctaggtttgtaaatgttgtgtttacgaggatttgttttgccatctaaaaaggcttcgc 100  Q
    ||||||||||||| ||||| ||||||| |||||||||||| |||||||   | |||||||||||| |||  |||  |||||||||| ||||||| |  ||    
T  44198772 tacatagagttcagaaggttatgcatagcaatgtcatgtctcctaggtccatgaatgttgtgtttgcgataattgattttgccatccaaaaaggttgagc 44198673  T
Q  101 aacgcagcttgttgctcgcttgc 123  Q
     || ||||||||||  |||||||    
T  44198672 gacacagcttgttgtccgcttgc 44198650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 21 - 92
Target Start/End: Original strand, 38671002 - 38671073
Alignment:
Q  21 atgcataacaatgtcatgtcccctaggtttgtaaatgttgtgtttacgaggatttgttttgccatctaaaaa 92  Q
    ||||||| |||||| ||||| |||||||   | |||||||||| |||||||||| |||||||||||||||||    
T  38671002 atgcatagcaatgttatgtctcctaggtccatgaatgttgtgtgtacgaggattggttttgccatctaaaaa 38671073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 86
Target Start/End: Original strand, 3443414 - 3443499
Alignment:
Q  1 tacatagagttcaaaaggtcatgcataacaatgtcatgtcccctaggtttgtaaatgttgtgtttacgaggatttgttttgccatc 86  Q
    ||||||||||||||| |||||||| ||  |||||| |||| ||||  | | | |||||||||||||||| |||| |||||||||||    
T  3443414 tacatagagttcaaagggtcatgcgtaggaatgtcttgtctcctaaatctatgaatgttgtgtttacgatgattggttttgccatc 3443499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 51234621 - 51234577
Alignment:
Q  1 tacatagagttcaaaaggtcatgcataacaatgtcatgtccccta 45  Q
    ||||||||||||||||||| |||||||||||||| ||||| ||||    
T  51234621 tacatagagttcaaaaggttatgcataacaatgttatgtctccta 51234577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 92
Target Start/End: Complemental strand, 4473067 - 4472976
Alignment:
Q  1 tacatagagttcaaaaggtcatgcataacaatgtcatgtcccctaggtttgtaaatgttgtgtttacgaggatttgttttgccatctaaaaa 92  Q
    |||||| ||||||||   ||||||||| |||| ||||||| ||||||| | | ||| ||||||||||||| ||| |||||| |||| |||||    
T  4473067 tacataaagttcaaagaatcatgcatagcaatttcatgtctcctaggtctatgaatattgtgtttacgagaattggttttgtcatccaaaaa 4472976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 24 - 123
Target Start/End: Original strand, 4669788 - 4669887
Alignment:
Q  24 cataacaatgtcatgtcccctaggtttgtaaatgttgtgtttacgaggatttgttttgccatctaaaaaggcttcgcaacgcagcttgttgctcgcttgc 123  Q
    ||||||||||||||||| ||| |||   | |||||||||||||||| ||||  |||||  ||| ||||||| || ||  ||||||||||||| |||||||    
T  4669788 cataacaatgtcatgtctccttggtccatgaatgttgtgtttacgatgattgattttgttatccaaaaaggtttggcggcgcagcttgttgcccgcttgc 4669887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 69
Target Start/End: Original strand, 46940875 - 46940943
Alignment:
Q  1 tacatagagttcaaaaggtcatgcataacaatgtcatgtcccctaggtttgtaaatgttgtgtttacga 69  Q
    ||||||||||||||| | |||||||  ||||||||||| | | ||||||  | ||||||||||||||||    
T  46940875 tacatagagttcaaaggatcatgcacgacaatgtcatgactcataggttcatgaatgttgtgtttacga 46940943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 60; Significance: 9e-26; HSPs: 24)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 1 - 92
Target Start/End: Complemental strand, 27521476 - 27521385
Alignment:
Q  1 tacatagagttcaaaaggtcatgcataacaatgtcatgtcccctaggtttgtaaatgttgtgtttacgaggatttgttttgccatctaaaaa 92  Q
    |||||||||||||||||||||||||||||||||||||||| |||| || | | |||||||||||||||||||||  |||||||||| |||||    
T  27521476 tacatagagttcaaaaggtcatgcataacaatgtcatgtctcctaagtctatgaatgttgtgtttacgaggattgattttgccatcgaaaaa 27521385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 1 - 93
Target Start/End: Complemental strand, 48539186 - 48539094
Alignment:
Q  1 tacatagagttcaaaaggtcatgcataacaatgtcatgtcccctaggtttgtaaatgttgtgtttacgaggatttgttttgccatctaaaaag 93  Q
    |||||||||| |||||||||||||||| |||||||||||| |||||||   | ||||||||||||||||||||| ||||||||||| ||||||    
T  48539186 tacatagagtccaaaaggtcatgcatagcaatgtcatgtctcctaggtccatgaatgttgtgtttacgaggattggttttgccatccaaaaag 48539094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 1 - 94
Target Start/End: Complemental strand, 4501264 - 4501171
Alignment:
Q  1 tacatagagttcaaaaggtcatgcataacaatgtcatgtcccctaggtttgtaaatgttgtgtttacgaggatttgttttgccatctaaaaagg 94  Q
    ||||||||||||||||| ||||||||| |||||||||||| ||||| ||  | ||||||||||||||||||||| | |||| ||||||||||||    
T  4501264 tacatagagttcaaaagttcatgcatagcaatgtcatgtctcctagattcatgaatgttgtgtttacgaggattagctttgtcatctaaaaagg 4501171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 1 - 123
Target Start/End: Original strand, 45613944 - 45614066
Alignment:
Q  1 tacatagagttcaaaaggtcatgcataacaatgtcatgtcccctaggtttgtaaatgttgtgtttacgaggatttgttttgccatctaaaaaggcttcgc 100  Q
    ||||||||||||||||| ||||||||||||||||||  || |||||||   | ||||||||||||||||||||| |||||||||||  ||||||  | ||    
T  45613944 tacatagagttcaaaagttcatgcataacaatgtcaaatctcctaggtccatgaatgttgtgtttacgaggattggttttgccatccgaaaaggtctagc 45614043  T
Q  101 aacgcagcttgttgctcgcttgc 123  Q
      ||||||||||||  |||||||    
T  45614044 ggcgcagcttgttgtccgcttgc 45614066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 1 - 94
Target Start/End: Original strand, 21326940 - 21327033
Alignment:
Q  1 tacatagagttcaaaaggtcatgcataacaatgtcatgtcccctaggtttgtaaatgttgtgtttacgaggatttgttttgccatctaaaaagg 94  Q
    ||||||||||||||||||||||||||| |||||| ||||| |||||||   | ||||||||||| |||||||||  |||||||||| |||||||    
T  21326940 tacatagagttcaaaaggtcatgcatagcaatgttatgtctcctaggtccatgaatgttgtgttcacgaggattgattttgccatccaaaaagg 21327033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 1 - 115
Target Start/End: Complemental strand, 982954 - 982840
Alignment:
Q  1 tacatagagttcaaaaggtcatgcataacaatgtcatgtcccctaggtttgtaaatgttgtgtttacgaggatttgttttgccatctaaaaaggcttcgc 100  Q
    ||||||||||||||||||||||||||| ||||||||||||  ||| ||   | ||||||||||| ||||||||| || |||||||| |||||||  | ||    
T  982954 tacatagagttcaaaaggtcatgcatatcaatgtcatgtcttctatgtccatgaatgttgtgttcacgaggattggtattgccatccaaaaaggtctagc 982855  T
Q  101 aacgcagcttgttgc 115  Q
     || |||||||||||    
T  982854 gacacagcttgttgc 982840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 1 - 93
Target Start/End: Original strand, 5972318 - 5972410
Alignment:
Q  1 tacatagagttcaaaaggtcatgcataacaatgtcatgtcccctaggtttgtaaatgttgtgtttacgaggatttgttttgccatctaaaaag 93  Q
    |||||||||||||||| ||||||||||  |||||||| || || || | | | ||||||||||||||||||||| ||||||||||| ||||||    
T  5972318 tacatagagttcaaaatgtcatgcatagtaatgtcatttctcccagatctatgaatgttgtgtttacgaggattagttttgccatccaaaaag 5972410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 1 - 92
Target Start/End: Original strand, 28517389 - 28517480
Alignment:
Q  1 tacatagagttcaaaaggtcatgcataacaatgtcatgtcccctaggtttgtaaatgttgtgtttacgaggatttgttttgccatctaaaaa 92  Q
    |||||||||| |||| ||| |||||||||||||| ||||| |||| ||   | ||||||||||||||||||||| ||||||||||| |||||    
T  28517389 tacatagagtccaaagggttatgcataacaatgttatgtctcctaagtccatgaatgttgtgtttacgaggattggttttgccatccaaaaa 28517480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 1 - 94
Target Start/End: Complemental strand, 5825278 - 5825185
Alignment:
Q  1 tacatagagttcaaaaggtcatgcataacaatgtcatgtcccctaggtttgtaaatgttgtgtttacgaggatttgttttgccatctaaaaagg 94  Q
    ||||||||||  ||| ||| ||||||| |||||| ||||| ||||||| | |  |||||||||||||||||||| ||||||||||| |||||||    
T  5825278 tacatagagtcgaaagggttatgcatagcaatgttatgtctcctaggtctatggatgttgtgtttacgaggattggttttgccatcgaaaaagg 5825185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 94
Target Start/End: Complemental strand, 19277298 - 19277203
Alignment:
Q  1 tacatagagttcaaaaggtcatgcataacaatgtcatgtcccctaggtttgtaaatgttgtgtt--tacgaggatttgttttgccatctaaaaagg 94  Q
    ||||||||||||||||||||||||||| |||||||||||| |||||||   | |||||||||||   ||||  ||| ||||||||||| |||||||    
T  19277298 tacatagagttcaaaaggtcatgcatagcaatgtcatgtctcctaggtccatgaatgttgtgttcacacgaaaattggttttgccatccaaaaagg 19277203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 93
Target Start/End: Complemental strand, 24527594 - 24527502
Alignment:
Q  1 tacatagagttcaaaaggtcatgcataacaatgtcatgtcccctaggtttgtaaatgttgtgtttacgaggatttgttttgccatctaaaaag 93  Q
    ||||||||||||||||||||||||||| ||||||||| || ||| |||   | |||||||| || ||||||||| |||||| |||| ||||||    
T  24527594 tacatagagttcaaaaggtcatgcatagcaatgtcatttctccttggtccatgaatgttgtattcacgaggattggttttgtcatccaaaaag 24527502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 14 - 92
Target Start/End: Complemental strand, 5715032 - 5714954
Alignment:
Q  14 aaaggtcatgcataacaatgtcatgtcccctaggtttgtaaatgttgtgtttacgaggatttgttttgccatctaaaaa 92  Q
    ||||||||| ||||||||||| ||||| |||||||   ||||||||||||||| || |||| |||||| ||||||||||    
T  5715032 aaaggtcatacataacaatgttatgtctcctaggtccataaatgttgtgtttatgaagattggttttgtcatctaaaaa 5714954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 9 - 94
Target Start/End: Complemental strand, 23037542 - 23037457
Alignment:
Q  9 gttcaaaaggtcatgcataacaatgtcatgtcccctaggtttgtaaatgttgtgtttacgaggatttgttttgccatctaaaaagg 94  Q
    ||||||| ||| ||||||| ||||||||| || | ||||| | | ||| |||||||||||||||||  ||||||||||||||||||    
T  23037542 gttcaaagggttatgcatagcaatgtcatttctcttaggtctatgaattttgtgtttacgaggattgattttgccatctaaaaagg 23037457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 10 - 115
Target Start/End: Original strand, 43333941 - 43334046
Alignment:
Q  10 ttcaaaaggtcatgcataacaatgtcatgtcccctaggtttgtaaatgttgtgtttacgaggatttgttttgccatctaaaaaggcttcgcaacgcagct 109  Q
    |||||||||||||||||| ||||| |||||| ||||| | | | ||||||| ||||| || |||| ||||||||||  |||||| ||| ||  |||||||    
T  43333941 ttcaaaaggtcatgcatatcaatgacatgtctcctagatctatgaatgttgagtttatgatgattggttttgccattcaaaaagacttggcggcgcagct 43334040  T
Q  110 tgttgc 115  Q
    ||||||    
T  43334041 tgttgc 43334046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 4 - 123
Target Start/End: Original strand, 25187036 - 25187155
Alignment:
Q  4 atagagttcaaaaggtcatgcataacaatgtcatgtcccctaggtttgtaaatgttgtgtttacgaggatttgttttgccatctaaaaaggcttcgcaac 103  Q
    |||||||||||||||||||||||| |||||||||||| ||||| |   | |||||||||||  | | ||||  |||| ||||||||||||   | ||  |    
T  25187036 atagagttcaaaaggtcatgcatagcaatgtcatgtctcctagatccatgaatgttgtgttcccaatgattgattttaccatctaaaaagatctagcggc 25187135  T
Q  104 gcagcttgttgctcgcttgc 123  Q
    |||||||||||| |||||||    
T  25187136 gcagcttgttgcccgcttgc 25187155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 2 - 73
Target Start/End: Original strand, 30216161 - 30216232
Alignment:
Q  2 acatagagttcaaaaggtcatgcataacaatgtcatgtcccctaggtttgtaaatgttgtgtttacgaggat 73  Q
    ||||| |||||||| ||||||||||| ||||||||| || ||||||| | | ||||||||||| ||||||||    
T  30216161 acataaagttcaaatggtcatgcatagcaatgtcatatctcctaggtctatgaatgttgtgttcacgaggat 30216232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 92
Target Start/End: Complemental strand, 43856879 - 43856788
Alignment:
Q  1 tacatagagttcaaaaggtcatgcataacaatgtcatgtcccctaggtttgtaaatgttgtgtttacgaggatttgttttgccatctaaaaa 92  Q
    ||||||||||||||| ||||||||| |||||||||||| | |||||||   | |||||| |||||||||| |||  |||||| ||| |||||    
T  43856879 tacatagagttcaaagggtcatgcacaacaatgtcatgactcctaggtccatgaatgttatgtttacgagaattgattttgctatccaaaaa 43856788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 123
Target Start/End: Original strand, 40726582 - 40726704
Alignment:
Q  1 tacatagagttcaaaaggtcatgcataacaatgtcatgtcccctaggtttgtaaatgttgtgtttacgaggatttgttttgccatctaaaaaggcttcgc 100  Q
    |||||||||| |||| ||| |||||||||||||  ||||| ||||| |   | ||||||||||||| |||||||  |||||||||| ||||| |  |  |    
T  40726582 tacatagagtccaaagggttatgcataacaatgctatgtctcctagatccatgaatgttgtgtttatgaggattgattttgccatccaaaaatgtctaac 40726681  T
Q  101 aacgcagcttgttgctcgcttgc 123  Q
    | ||||||||||||| |||||||    
T  40726682 atcgcagcttgttgcccgcttgc 40726704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 74
Target Start/End: Complemental strand, 10905123 - 10905050
Alignment:
Q  1 tacatagagttcaaaaggtcatgcataacaatgtcatgtcccctaggtttgtaaatgttgtgtttacgaggatt 74  Q
    |||||||||||||||  | ||||||||||||||||||||| |||||||   | ||||| |||||||| ||||||    
T  10905123 tacatagagttcaaagagccatgcataacaatgtcatgtctcctaggtccatgaatgtcgtgtttacaaggatt 10905050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 122
Target Start/End: Complemental strand, 22197991 - 22197871
Alignment:
Q  1 tacatagagttcaaaaggtcatgcataacaatgtcatgtcccctaggtttgtaaatgttgtgtttacgaggatttgttttgccatctaaaaaggcttcgc 100  Q
    ||||||||||||||||||| ||| ||| ||| |||||||| |||||||   | ||||||||||||||||  |||  ||||| |||| |||||||||| ||    
T  22197991 tacatagagttcaaaaggttatg-atagcaacgtcatgtctcctaggtcaatgaatgttgtgtttacgataattgattttgtcatccaaaaaggcttggc 22197893  T
Q  101 aacgcagcttgttgctcgcttg 122  Q
       ||| |||||||| ||||||    
T  22197892 ggtgcaacttgttgcccgcttg 22197871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 122
Target Start/End: Original strand, 22239830 - 22239950
Alignment:
Q  1 tacatagagttcaaaaggtcatgcataacaatgtcatgtcccctaggtttgtaaatgttgtgtttacgaggatttgttttgccatctaaaaaggcttcgc 100  Q
    ||||||||||||||||||| ||| ||| ||| |||||||| |||||||   | ||||||||||||||||  |||  ||||| |||| |||||||||| ||    
T  22239830 tacatagagttcaaaaggttatg-atagcaacgtcatgtctcctaggtcaatgaatgttgtgtttacgataattgattttgtcatccaaaaaggcttggc 22239928  T
Q  101 aacgcagcttgttgctcgcttg 122  Q
       ||| |||||||| ||||||    
T  22239929 ggtgcaacttgttgcccgcttg 22239950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 81
Target Start/End: Original strand, 42295286 - 42295366
Alignment:
Q  1 tacatagagttcaaaaggtcatgcataacaatgtcatgtcccctaggtttgtaaatgttgtgtttacgaggatttgttttg 81  Q
    ||||||| ||||||||  |||||||||||| ||||||||| |||||||   | ||| |||||||||||| |||| ||||||    
T  42295286 tacatagcgttcaaaatatcatgcataacattgtcatgtctcctaggtccatgaatcttgtgtttacgatgattagttttg 42295366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 92
Target Start/End: Original strand, 41117872 - 41117963
Alignment:
Q  1 tacatagagttcaaaaggtcatgcataacaatgtcatgtcccctaggtttgtaaatgttgtgtttacgaggatttgttttgccatctaaaaa 92  Q
    ||||||||||| ||||| ||||||||| |||||||||||  |||||||   | ||||||||||| |||| ||||  |||||| ||| |||||    
T  41117872 tacatagagtttaaaagatcatgcatagcaatgtcatgtttcctaggtccatgaatgttgtgttcacgatgattgattttgctatccaaaaa 41117963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 29 - 93
Target Start/End: Original strand, 27027760 - 27027824
Alignment:
Q  29 caatgtcatgtcccctaggtttgtaaatgttgtgtttacgaggatttgttttgccatctaaaaag 93  Q
    |||||||||||| |||||||   | ||||||||||| ||||||||| ||||||| ||| ||||||    
T  27027760 caatgtcatgtctcctaggtccatgaatgttgtgttcacgaggattggttttgctatccaaaaag 27027824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 59; Significance: 4e-25; HSPs: 26)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 1 - 123
Target Start/End: Original strand, 30940834 - 30940956
Alignment:
Q  1 tacatagagttcaaaaggtcatgcataacaatgtcatgtcccctaggtttgtaaatgttgtgtttacgaggatttgttttgccatctaaaaaggcttcgc 100  Q
    ||||||||||||||||||||||||||||||||||||| |  ||||||| | | ||||||||||| | |||||||  |||||||||| |||||||  | ||    
T  30940834 tacatagagttcaaaaggtcatgcataacaatgtcatatatcctaggtctatgaatgttgtgttcatgaggattgattttgccatccaaaaaggtctagc 30940933  T
Q  101 aacgcagcttgttgctcgcttgc 123  Q
     |||||||||||||| |||||||    
T  30940934 gacgcagcttgttgcccgcttgc 30940956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 1 - 93
Target Start/End: Complemental strand, 16955465 - 16955373
Alignment:
Q  1 tacatagagttcaaaaggtcatgcataacaatgtcatgtcccctaggtttgtaaatgttgtgtttacgaggatttgttttgccatctaaaaag 93  Q
    ||||||||||||||||||||||||||| |||||||||||| ||||||    | |||||||||||||||||||||  ||| |||||| ||||||    
T  16955465 tacatagagttcaaaaggtcatgcatagcaatgtcatgtctcctaggcccatgaatgttgtgtttacgaggattgatttggccatcaaaaaag 16955373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 1 - 92
Target Start/End: Original strand, 600794 - 600885
Alignment:
Q  1 tacatagagttcaaaaggtcatgcataacaatgtcatgtcccctaggtttgtaaatgttgtgtttacgaggatttgttttgccatctaaaaa 92  Q
    ||||||||||||||||||||||| ||||| |||||||||| |||||||   | |||| ||||||||||| |||| ||||||||||| |||||    
T  600794 tacatagagttcaaaaggtcatgtataactatgtcatgtctcctaggtccattaatgctgtgtttacgatgattagttttgccatccaaaaa 600885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 1 - 92
Target Start/End: Complemental strand, 4419268 - 4419177
Alignment:
Q  1 tacatagagttcaaaaggtcatgcataacaatgtcatgtcccctaggtttgtaaatgttgtgtttacgaggatttgttttgccatctaaaaa 92  Q
    ||||||||||||||| ||| |||||||||||||| ||||| |||||||   | |||||||||||||||| |||| ||||||||||| |||||    
T  4419268 tacatagagttcaaagggttatgcataacaatgttatgtctcctaggtccatgaatgttgtgtttacgatgattggttttgccatccaaaaa 4419177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 5 - 123
Target Start/End: Original strand, 50464402 - 50464520
Alignment:
Q  5 tagagttcaaaaggtcatgcataacaatgtcatgtcccctaggtttgtaaatgttgtgtttacgaggatttgttttgccatctaaaaaggcttcgcaacg 104  Q
    ||||||| ||| |||||||||||||||||||||||| || |  | | | |||||||||||||||||||||| |||||||||| |||||| | | ||  ||    
T  50464402 tagagtttaaagggtcatgcataacaatgtcatgtctcccaaatatatgaatgttgtgtttacgaggatttattttgccatccaaaaagacctagcggcg 50464501  T
Q  105 cagcttgttgctcgcttgc 123  Q
    ||||||||||  |||||||    
T  50464502 cagcttgttgtccgcttgc 50464520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 1 - 92
Target Start/End: Original strand, 34107798 - 34107889
Alignment:
Q  1 tacatagagttcaaaaggtcatgcataacaatgtcatgtcccctaggtttgtaaatgttgtgtttacgaggatttgttttgccatctaaaaa 92  Q
    |||||||||||||||| ||||||||||||||||| ||||| ||||| |   | ||||||||||| ||||||||| |||||| |||| |||||    
T  34107798 tacatagagttcaaaaagtcatgcataacaatgttatgtctcctagatccatgaatgttgtgttcacgaggattggttttgtcatccaaaaa 34107889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 1 - 84
Target Start/End: Original strand, 56462208 - 56462291
Alignment:
Q  1 tacatagagttcaaaaggtcatgcataacaatgtcatgtcccctaggtttgtaaatgttgtgtttacgaggatttgttttgcca 84  Q
    ||||||||||||||| | |||||||| ||||||||||||| |||| ||   ||||||||||||||||||| ||| |||||||||    
T  56462208 tacatagagttcaaaggatcatgcatgacaatgtcatgtctcctaagtccataaatgttgtgtttacgagaattggttttgcca 56462291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 123
Target Start/End: Complemental strand, 3330001 - 3329879
Alignment:
Q  1 tacatagagttcaaaaggtcatgcataacaatgtcatgtcccctaggtttgtaaatgttgtgtttacgaggatttgttttgccatctaaaaaggcttcgc 100  Q
    |||||||||| |||| ||| ||||||| |||||| ||||| |||||||   | |||| ||||||||||| |||| ||||||||||| |||||||  | ||    
T  3330001 tacatagagtccaaagggttatgcatagcaatgttatgtctcctaggtccatgaatgctgtgtttacgatgattggttttgccatccaaaaaggtctagc 3329902  T
Q  101 aacgcagcttgttgctcgcttgc 123  Q
      ||||||||||||| |||||||    
T  3329901 ggcgcagcttgttgcccgcttgc 3329879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 94
Target Start/End: Complemental strand, 53170518 - 53170424
Alignment:
Q  1 tacatagagttcaaaaggtcatgcataacaatgtcatgtccccta-ggtttgtaaatgttgtgtttacgaggatttgttttgccatctaaaaagg 94  Q
    ||||||||||||||||||||||||||| |||||||||||| ||||  | |  | ||||||||||| |||||||||  |||||| |||||||||||    
T  53170518 tacatagagttcaaaaggtcatgcatagcaatgtcatgtctcctataggtcatgaatgttgtgttcacgaggattgattttgctatctaaaaagg 53170424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 123
Target Start/End: Complemental strand, 39001402 - 39001280
Alignment:
Q  1 tacatagagttcaaaaggtcatgcataacaatgtcatgtcccctaggtttgtaaatgttgtgtttacgaggatttgttttgccatctaaaaaggcttcgc 100  Q
    |||||||||| |||| | | ||||||||||||||  |||| |||||||   | ||||||||||||||||||||| |||||| |||| |||||||  | ||    
T  39001402 tacatagagtccaaaggattatgcataacaatgttgtgtctcctaggtccatgaatgttgtgtttacgaggattggttttgtcatccaaaaaggtctagc 39001303  T
Q  101 aacgcagcttgttgctcgcttgc 123  Q
      ||||| ||||||| |||||||    
T  39001302 ggcgcagtttgttgcccgcttgc 39001280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 115
Target Start/End: Complemental strand, 53619591 - 53619477
Alignment:
Q  1 tacatagagttcaaaaggtcatgcataacaatgtcatgtcccctaggtttgtaaatgttgtgtttacgaggatttgttttgccatctaaaaaggcttcgc 100  Q
    ||||||||||  ||| ||| |||||||||||||| ||||| | |||||   | ||||||||||||||||| ||| ||||||||||| |||||||  | ||    
T  53619591 tacatagagtctaaagggttatgcataacaatgttatgtctcttaggtccatgaatgttgtgtttacgagaattggttttgccatccaaaaaggtctagc 53619492  T
Q  101 aacgcagcttgttgc 115  Q
      |||||||||||||    
T  53619491 ggcgcagcttgttgc 53619477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 26 - 122
Target Start/End: Original strand, 50442606 - 50442702
Alignment:
Q  26 taacaatgtcatgtcccctaggtttgtaaatgttgtgtttacgaggatttgttttgccatctaaaaaggcttcgcaacgcagcttgttgctcgcttg 122  Q
    ||||||||| ||||| ||||||||  |  |||||||||||| ||||||| ||||||||||| ||||||| || |   ||||||||||||| ||||||    
T  50442606 taacaatgttatgtctcctaggttcatggatgttgtgtttaagaggattggttttgccatccaaaaagggttagtggcgcagcttgttgcccgcttg 50442702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 92
Target Start/End: Original strand, 55933562 - 55933653
Alignment:
Q  1 tacatagagttcaaaaggtcatgcataacaatgtcatgtcccctaggtttgtaaatgttgtgtttacgaggatttgttttgccatctaaaaa 92  Q
    |||||||||| |||| ||| || ||||||||| | ||||| |||||||  || |||||||||||||||| ||||  |||||||||| |||||    
T  55933562 tacatagagtccaaagggttatacataacaatattatgtctcctaggtccgtgaatgttgtgtttacgatgattgattttgccatccaaaaa 55933653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 123
Target Start/End: Original strand, 50001028 - 50001150
Alignment:
Q  1 tacatagagttcaaaaggtcatgcataacaatgtcatgtcccctaggtttgtaaatgttgtgtttacgaggatttgttttgccatctaaaaaggcttcgc 100  Q
    |||||| ||| |||| ||| ||||||| |||||| ||||| ||||| |   |||||||||||||||||| ||||  |||||||||| ||||||   | ||    
T  50001028 tacatatagtccaaagggttatgcatagcaatgttatgtctcctagatccataaatgttgtgtttacgaagattgattttgccatccaaaaagatctagc 50001127  T
Q  101 aacgcagcttgttgctcgcttgc 123  Q
      ||||||||||||| |||||||    
T  50001128 ggcgcagcttgttgcccgcttgc 50001150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 86
Target Start/End: Complemental strand, 23255718 - 23255633
Alignment:
Q  1 tacatagagttcaaaaggtcatgcataacaatgtcatgtcccctaggtttgtaaatgttgtgtttacgaggatttgttttgccatc 86  Q
    |||||||||| |||| ||| |||||||||||||| ||||| |||| ||   | ||| |||||||||||||||||  ||||||||||    
T  23255718 tacatagagtccaaagggttatgcataacaatgttatgtctcctaagtccatgaatattgtgtttacgaggattgattttgccatc 23255633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 58 - 93
Target Start/End: Original strand, 50463102 - 50463137
Alignment:
Q  58 ttgtgtttacgaggatttgttttgccatctaaaaag 93  Q
    ||||||||||||||||||||||||||||| ||||||    
T  50463102 ttgtgtttacgaggatttgttttgccatccaaaaag 50463137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 17 - 115
Target Start/End: Original strand, 23233232 - 23233330
Alignment:
Q  17 ggtcatgcataacaatgtcatgtcccctaggtttgtaaatgttgtgtttacgaggatttgttttgccatctaaaaaggcttcgcaacgcagcttgttgc 115  Q
    |||||||||||| ||||||||||  ||||| ||  | |||||||| |||| |||||||  ||| || ||| |||||||||| ||| | |||||||||||    
T  23233232 ggtcatgcataataatgtcatgtttcctagattcatgaatgttgtctttatgaggattgatttggctatccaaaaaggcttagcagcacagcttgttgc 23233330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 4 - 94
Target Start/End: Complemental strand, 25504297 - 25504207
Alignment:
Q  4 atagagttcaaaaggtcatgcataacaatgtcatgtcccctaggtttgtaaatgttgtgtttacgaggatttgttttgccatctaaaaagg 94  Q
    |||||||| |||||||||||||||  ||||||||||| | |||||   | ||| ||||||||| |||||||  |||||||||  |||||||    
T  25504297 atagagtttaaaaggtcatgcatagtaatgtcatgtctcataggtccatgaatattgtgtttatgaggattgcttttgccattcaaaaagg 25504207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 123
Target Start/End: Original strand, 42455709 - 42455831
Alignment:
Q  1 tacatagagttcaaaaggtcatgcataacaatgtcatgtcccctaggtttgtaaatgttgtgtttacgaggatttgttttgccatctaaaaaggcttcgc 100  Q
    ||||||||||||||| | ||||| |||||||||||||||   ||||||   | |||||||| |||||||| |||   |||| |||  ||||||| || ||    
T  42455709 tacatagagttcaaatgatcatggataacaatgtcatgttttctaggtccatgaatgttgtttttacgagaattgactttgtcattcaaaaaggtttagc 42455808  T
Q  101 aacgcagcttgttgctcgcttgc 123  Q
    | | || ||||||||||||||||    
T  42455809 agcacaacttgttgctcgcttgc 42455831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 6865922 - 6865967
Alignment:
Q  1 tacatagagttcaaaaggtcatgcataacaatgtcatgtcccctag 46  Q
    ||||||||||||||| ||| ||||||| |||||||||||| |||||    
T  6865922 tacatagagttcaaagggtaatgcatagcaatgtcatgtctcctag 6865967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 1 - 34
Target Start/End: Original strand, 32312813 - 32312846
Alignment:
Q  1 tacatagagttcaaaaggtcatgcataacaatgt 34  Q
    |||| |||||||||||||||||||||||||||||    
T  32312813 tacaaagagttcaaaaggtcatgcataacaatgt 32312846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 1 - 81
Target Start/End: Complemental strand, 52403946 - 52403868
Alignment:
Q  1 tacatagagttcaaaaggtcatgcataacaatgtcatgtcccctaggtttgtaaatgttgtgtttacgaggatttgttttg 81  Q
    |||||| |||||||| ||||||| | |||||| |||| ||   ||||||| |||||||||||||||||| |||| ||||||    
T  52403946 tacatatagttcaaagggtcatgtacaacaatatcatctct--taggtttataaatgttgtgtttacgaagattggttttg 52403868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 58 - 114
Target Start/End: Complemental strand, 12053415 - 12053359
Alignment:
Q  58 ttgtgtttacgaggatttgttttgccatctaaaaaggcttcgcaacgcagcttgttg 114  Q
    ||||||||||||| ||| ||||||||||| ||||||||   || |||||||||||||    
T  12053415 ttgtgtttacgagaattggttttgccatcgaaaaaggccgagcgacgcagcttgttg 12053359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 30 - 86
Target Start/End: Original strand, 40005289 - 40005345
Alignment:
Q  30 aatgtcatgtcccctaggtttgtaaatgttgtgtttacgaggatttgttttgccatc 86  Q
    ||||||||||| ||||| | | | |||||||||||||| |||||| |||||||||||    
T  40005289 aatgtcatgtctcctagatatatcaatgttgtgtttacaaggattggttttgccatc 40005345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 93
Target Start/End: Original strand, 48657017 - 48657109
Alignment:
Q  1 tacatagagttcaaaaggtcatgcataacaatgtcatgtcccctaggtttgtaaatgttgtgtttacgaggatttgttttgccatctaaaaag 93  Q
    |||||||||| |||| | | ||||||| |||||| ||||| | ||||| | | |||||||||||||||| ||||  ||||||| || ||||||    
T  48657017 tacatagagtccaaatgattatgcatagcaatgttatgtctcataggtctatgaatgttgtgtttacgatgattgattttgccgtccaaaaag 48657109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 2 - 38
Target Start/End: Original strand, 54190954 - 54190990
Alignment:
Q  2 acatagagttcaaaaggtcatgcataacaatgtcatg 38  Q
    |||||||||||||| || |||||||||||||||||||    
T  54190954 acatagagttcaaagggccatgcataacaatgtcatg 54190990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 59; Significance: 4e-25; HSPs: 18)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 1 - 95
Target Start/End: Complemental strand, 13413356 - 13413262
Alignment:
Q  1 tacatagagttcaaaaggtcatgcataacaatgtcatgtcccctaggtttgtaaatgttgtgtttacgaggatttgttttgccatctaaaaaggc 95  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||   | ||||||||||||| ||| ||| ||||||||||| ||||||||    
T  13413356 tacatagagttcaaaaggtcatgcataacaatgtcatgtctcctaggtccatgaatgttgtgtttatgagaattggttttgccatccaaaaaggc 13413262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 1 - 84
Target Start/End: Original strand, 41868010 - 41868093
Alignment:
Q  1 tacatagagttcaaaaggtcatgcataacaatgtcatgtcccctaggtttgtaaatgttgtgtttacgaggatttgttttgcca 84  Q
    |||||||||||||||||||||||||||||||||||||||| || ||||   | ||||||||||||||||||||| |||||||||    
T  41868010 tacatagagttcaaaaggtcatgcataacaatgtcatgtctcccaggtccatgaatgttgtgtttacgaggattggttttgcca 41868093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 1 - 74
Target Start/End: Complemental strand, 17344643 - 17344570
Alignment:
Q  1 tacatagagttcaaaaggtcatgcataacaatgtcatgtcccctaggtttgtaaatgttgtgtttacgaggatt 74  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||   | |||||||||||||||||||||    
T  17344643 tacatagagttcaaaaggtcatgcataacaatgtcatgtctcctaggtccatgaatgttgtgtttacgaggatt 17344570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 1 - 122
Target Start/End: Original strand, 18745056 - 18745177
Alignment:
Q  1 tacatagagttcaaaaggtcatgcataacaatgtcatgtcccctaggtttgtaaatgttgtgtttacgaggatttgttttgccatctaaaaaggcttcgc 100  Q
    ||||||||||||||||| ||||||||| ||||||||| |  ||||||| | | |||||||||||||  |||||| ||||||||||| |||||||  | ||    
T  18745056 tacatagagttcaaaagatcatgcatagcaatgtcatatttcctaggtctatgaatgttgtgtttataaggattggttttgccatccaaaaaggtctagc 18745155  T
Q  101 aacgcagcttgttgctcgcttg 122  Q
      |||||||| |||||||||||    
T  18745156 ggcgcagcttattgctcgcttg 18745177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 4 - 123
Target Start/End: Original strand, 9685520 - 9685639
Alignment:
Q  4 atagagttcaaaaggtcatgcataacaatgtcatgtcccctaggtttgtaaatgttgtgtttacgaggatttgttttgccatctaaaaaggcttcgcaac 103  Q
    |||||||||||||||||||| ||| |||||||||||| |||||||   | ||||||||||| || | ||||  |||||||||| |||||||  | ||  |    
T  9685520 atagagttcaaaaggtcatggatagcaatgtcatgtctcctaggtccatgaatgttgtgttcacaaagattgtttttgccatccaaaaaggtctagcggc 9685619  T
Q  104 gcagcttgttgctcgcttgc 123  Q
    |||||||||||| |||||||    
T  9685620 gcagcttgttgcccgcttgc 9685639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 115
Target Start/End: Original strand, 4413168 - 4413282
Alignment:
Q  1 tacatagagttcaaaaggtcatgcataacaatgtcatgtcccctaggtttgtaaatgttgtgtttacgaggatttgttttgccatctaaaaaggcttcgc 100  Q
    ||||||| ||||||||||||||||||| ||| |||||||| |||||||   | ||||||||||| | |||||||  |||||||||| |||||||  | ||    
T  4413168 tacatagggttcaaaaggtcatgcatagcaaagtcatgtctcctaggtccatgaatgttgtgttcatgaggattgattttgccatccaaaaaggtctagc 4413267  T
Q  101 aacgcagcttgttgc 115  Q
      |||||||||||||    
T  4413268 ggcgcagcttgttgc 4413282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 93
Target Start/End: Original strand, 19161885 - 19161977
Alignment:
Q  1 tacatagagttcaaaaggtcatgcataacaatgtcatgtcccctaggtttgtaaatgttgtgtttacgaggatttgttttgccatctaaaaag 93  Q
    ||||||||||||||||||||||||||| |||||||||||| |||||||   | |||  ||||||| ||||||||  ||||| |||| ||||||    
T  19161885 tacatagagttcaaaaggtcatgcatatcaatgtcatgtctcctaggtcaatgaatagtgtgttttcgaggattgattttgtcatccaaaaag 19161977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 1 - 92
Target Start/End: Original strand, 16351946 - 16352037
Alignment:
Q  1 tacatagagttcaaaaggtcatgcataacaatgtcatgtcccctaggtttgtaaatgttgtgtttacgaggatttgttttgccatctaaaaa 92  Q
    ||||||||||||||| ||||||||| |||||||||||||| | |||||   | ||| || ||||||||| ||||  ||||||||||||||||    
T  16351946 tacatagagttcaaatggtcatgcacaacaatgtcatgtctcttaggtacatgaatattatgtttacgatgattgtttttgccatctaaaaa 16352037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 1 - 48
Target Start/End: Original strand, 20142827 - 20142874
Alignment:
Q  1 tacatagagttcaaaaggtcatgcataacaatgtcatgtcccctaggt 48  Q
    |||||||||||||||||||||| ||||||||||||||||| |||||||    
T  20142827 tacatagagttcaaaaggtcatacataacaatgtcatgtctcctaggt 20142874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 61 - 123
Target Start/End: Original strand, 3208406 - 3208468
Alignment:
Q  61 tgtttacgaggatttgttttgccatctaaaaaggcttcgcaacgcagcttgttgctcgcttgc 123  Q
    |||||||||||||| ||||||||||| ||||||| || ||  ||||||||||||| |||||||    
T  3208406 tgtttacgaggattggttttgccatccaaaaaggtttagcggcgcagcttgttgcccgcttgc 3208468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 75
Target Start/End: Complemental strand, 44686421 - 44686347
Alignment:
Q  1 tacatagagttcaaaaggtcatgcataacaatgtcatgtcccctaggtttgtaaatgttgtgtttacgaggattt 75  Q
    |||||||| | |||| ||| ||||||| |||||| ||||| |||||||  || ||||||||||||||||||||||    
T  44686421 tacatagattccaaagggttatgcatagcaatgttatgtctcctaggtccgtgaatgttgtgtttacgaggattt 44686347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 94
Target Start/End: Complemental strand, 28225005 - 28224912
Alignment:
Q  1 tacatagagttcaaaaggtcatgcataacaatgtcatgtcccctaggtttgtaaatgttgtgtttacgaggatttgttttgccatctaaaaagg 94  Q
    |||||||||| |||| | | |||||| ||||| | ||||| |||||||   | ||||||||||||| || |||||||||||||||| |||||||    
T  28225005 tacatagagtccaaaggattatgcatgacaatattatgtctcctaggtcaatgaatgttgtgtttatgaagatttgttttgccatccaaaaagg 28224912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 48
Target Start/End: Original strand, 23485038 - 23485085
Alignment:
Q  1 tacatagagttcaaaaggtcatgcataacaatgtcatgtcccctaggt 48  Q
    ||||||||||||||||| |||||||||||||||  ||||| |||||||    
T  23485038 tacatagagttcaaaagatcatgcataacaatgctatgtctcctaggt 23485085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 40
Target Start/End: Original strand, 34814920 - 34814959
Alignment:
Q  1 tacatagagttcaaaaggtcatgcataacaatgtcatgtc 40  Q
    ||||||||||||||| |||||||||||||||||| |||||    
T  34814920 tacatagagttcaaatggtcatgcataacaatgttatgtc 34814959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 65 - 115
Target Start/End: Complemental strand, 30602430 - 30602380
Alignment:
Q  65 tacgaggatttgttttgccatctaaaaaggcttcgcaacgcagcttgttgc 115  Q
    |||||||||| ||||||||||| |||||||| | ||| |||||||||||||    
T  30602430 tacgaggattggttttgccatccaaaaaggcctagcagcgcagcttgttgc 30602380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 1 - 94
Target Start/End: Complemental strand, 27502367 - 27502274
Alignment:
Q  1 tacatagagttcaaaaggtcatgcataacaatgtcatgtcccctaggtttgtaaatgttgtgtttacgaggatttgttttgccatctaaaaagg 94  Q
    |||||||| | |||| ||| ||||||| |||| ||||||| ||||| | | | |||||||||||||||| ||||  |||||| ||| |||||||    
T  27502367 tacatagaatccaaagggttatgcatagcaatatcatgtctcctagatctatgaatgttgtgtttacgaagattgattttgcaatccaaaaagg 27502274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 127 - 176
Target Start/End: Original strand, 40404316 - 40404365
Alignment:
Q  127 ttttaaaaattggatcggtcatcgatttggtaaggtcactgagtcattgg 176  Q
    |||||||||| |||||||||||||| | |||||||| | |||||||||||    
T  40404316 ttttaaaaatcggatcggtcatcgactcggtaaggttagtgagtcattgg 40404365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 16 - 48
Target Start/End: Original strand, 20142871 - 20142903
Alignment:
Q  16 aggtcatgcataacaatgtcatgtcccctaggt 48  Q
    ||||||||||||||||||||||||| |||||||    
T  20142871 aggtcatgcataacaatgtcatgtctcctaggt 20142903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 59; Significance: 4e-25; HSPs: 22)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 1 - 123
Target Start/End: Complemental strand, 22346900 - 22346778
Alignment:
Q  1 tacatagagttcaaaaggtcatgcataacaatgtcatgtcccctaggtttgtaaatgttgtgtttacgaggatttgttttgccatctaaaaaggcttcgc 100  Q
    |||| ||||||||||||||||||||||  ||||||||||| ||||||||| | ||||||||||| ||||||||| ||||||||||| |||||||  | ||    
T  22346900 tacacagagttcaaaaggtcatgcatagaaatgtcatgtctcctaggtttatgaatgttgtgttcacgaggattagttttgccatccaaaaaggtctagc 22346801  T
Q  101 aacgcagcttgttgctcgcttgc 123  Q
      ||||||||||||  |||||||    
T  22346800 ggcgcagcttgttgtccgcttgc 22346778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 1 - 94
Target Start/End: Original strand, 20259899 - 20259992
Alignment:
Q  1 tacatagagttcaaaaggtcatgcataacaatgtcatgtcccctaggtttgtaaatgttgtgtttacgaggatttgttttgccatctaaaaagg 94  Q
    |||||||||||||||||||||||||||  ||||||||||| | || |||  |||||||||||||||   ||||| ||||||||||| |||||||    
T  20259899 tacatagagttcaaaaggtcatgcatagtaatgtcatgtctcataagttaataaatgttgtgtttatatggattggttttgccatccaaaaagg 20259992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 1 - 94
Target Start/End: Complemental strand, 21473008 - 21472915
Alignment:
Q  1 tacatagagttcaaaaggtcatgcataacaatgtcatgtcccctaggtttgtaaatgttgtgtttacgaggatttgttttgccatctaaaaagg 94  Q
    ||||||||||||||||||||||||||| |||||||||||| |||||||   | ||||||| ||| | ||||| | ||||||||||| |||||||    
T  21473008 tacatagagttcaaaaggtcatgcatagcaatgtcatgtctcctaggtccatgaatgttgcgttcaggaggactggttttgccatccaaaaagg 21472915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 1 - 94
Target Start/End: Original strand, 24177613 - 24177706
Alignment:
Q  1 tacatagagttcaaaaggtcatgcataacaatgtcatgtcccctaggtttgtaaatgttgtgtttacgaggatttgttttgccatctaaaaagg 94  Q
    |||||||||||||||| |||||||||| ||||||||| || |||||||   | ||||||||||| ||||||||| ||||||||| | |||||||    
T  24177613 tacatagagttcaaaaagtcatgcatagcaatgtcatatctcctaggtccatgaatgttgtgttcacgaggattggttttgccaaccaaaaagg 24177706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 1 - 97
Target Start/End: Complemental strand, 2898707 - 2898611
Alignment:
Q  1 tacatagagttcaaaaggtcatgcataacaatgtcatgtcccctaggtttgtaaatgttgtgtttacgaggatttgttttgccatctaaaaaggctt 97  Q
    ||||||||||||||||| |||||||||||||| ||||||| | || | |  | ||||||||||||| |||||||  |||||||||| ||||||||||    
T  2898707 tacatagagttcaaaagatcatgcataacaatatcatgtctcatacgatcatgaatgttgtgtttaagaggattgattttgccatccaaaaaggctt 2898611  T

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Target: chr1; HSP #6
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 1 - 114
Target Start/End: Original strand, 31737425 - 31737537
Alignment:
Q  1 tacatagagttcaaaaggtcatgcataacaatgtcatgtcccctaggtttgtaaatgttgtgtttacgaggatttgttttgccatctaaaaaggcttcgc 100  Q
    ||||||||||||||||||||||||||| |||||| ||||  ||||| |   | ||| | |||||||||||||||  |||||||||| |||||||||| ||    
T  31737425 tacatagagttcaaaaggtcatgcatatcaatgttatgtttcctagatccatgaat-tagtgtttacgaggattgattttgccatccaaaaaggcttggc 31737523  T
Q  101 aacgcagcttgttg 114  Q
      ||||||||||||    
T  31737524 ggcgcagcttgttg 31737537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 54 - 122
Target Start/End: Complemental strand, 7483836 - 7483769
Alignment:
Q  54 aatgttgtgtttacgaggatttgttttgccatctaaaaaggcttcgcaacgcagcttgttgctcgcttg 122  Q
    |||||||||||||||| |||| |||||||||||||||||||||| ||  |||||| |||||||||||||    
T  7483836 aatgttgtgtttacgaagattagttttgccatctaaaaaggcttagcggcgcagc-tgttgctcgcttg 7483769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 4 - 72
Target Start/End: Original strand, 45659751 - 45659819
Alignment:
Q  4 atagagttcaaaaggtcatgcataacaatgtcatgtcccctaggtttgtaaatgttgtgtttacgagga 72  Q
    |||||||||||||| ||||||||| |||||||||||| |||||||   ||||||| |||||||||||||    
T  45659751 atagagttcaaaagatcatgcatagcaatgtcatgtctcctaggtcaataaatgtcgtgtttacgagga 45659819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 6 - 80
Target Start/End: Original strand, 11128361 - 11128435
Alignment:
Q  6 agagttcaaaaggtcatgcataacaatgtcatgtcccctaggtttgtaaatgttgtgtttacgaggatttgtttt 80  Q
    |||||| ||||||||||||||| |||||| ||||| ||||||| | |||||| ||||||||| | ||||||||||    
T  11128361 agagtttaaaaggtcatgcatatcaatgttatgtctcctaggtctataaatgatgtgtttacaatgatttgtttt 11128435  T

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Target: chr1; HSP #10
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 74
Target Start/End: Original strand, 4862091 - 4862164
Alignment:
Q  1 tacatagagttcaaaaggtcatgcataacaatgtcatgtcccctaggtttgtaaatgttgtgtttacgaggatt 74  Q
    ||||||||||||||| |||||||||||||||||||| ||||| ||| |   | ||||||||| |||||||||||    
T  4862091 tacatagagttcaaagggtcatgcataacaatgtcacgtcccttagatccatgaatgttgtgattacgaggatt 4862164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 94
Target Start/End: Original strand, 28041229 - 28041322
Alignment:
Q  1 tacatagagttcaaaaggtcatgcataacaatgtcatgtcccctaggtttgtaaatgttgtgtttacgaggatttgttttgccatctaaaaagg 94  Q
    ||||||||||||||||||||||||||| ||||||||||||| ||| ||   | ||||||||| | | |||||||  |||| ||||| |||||||    
T  28041229 tacatagagttcaaaaggtcatgcatagcaatgtcatgtcctctaagtccatgaatgttgtgctcatgaggattgatttttccatccaaaaagg 28041322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 9 - 123
Target Start/End: Original strand, 868513 - 868625
Alignment:
Q  9 gttcaaaaggtcatgcataacaatgtcatgtcccctaggtttgtaaatgttgtgtttacgaggatttgttttgccatctaaaaaggcttcgcaacgcagc 108  Q
    ||||||||||||||||||| |||||||||||| |||| ||   | ||  ||||||| || |||||| ||||||||||| |||||||  | ||  ||||||    
T  868513 gttcaaaaggtcatgcatagcaatgtcatgtctcctaagtccatgaa--ttgtgttcacaaggattggttttgccatccaaaaaggtctagcggcgcagc 868610  T
Q  109 ttgttgctcgcttgc 123  Q
    ||||||| |||||||    
T  868611 ttgttgcccgcttgc 868625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 92
Target Start/End: Complemental strand, 34644571 - 34644480
Alignment:
Q  1 tacatagagttcaaaaggtcatgcataacaatgtcatgtcccctaggtttgtaaatgttgtgtttacgaggatttgttttgccatctaaaaa 92  Q
    |||||||||| |||| ||| ||||||| |||||| ||||| |||||||   | |||||||||||||||| ||||  |||||||||| |||||    
T  34644571 tacatagagtccaaagggttatgcatatcaatgttatgtctcctaggtccatgaatgttgtgtttacgatgattgattttgccatccaaaaa 34644480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 29169895 - 29169940
Alignment:
Q  1 tacatagagttcaaaaggtcatgcataacaatgtcatgtcccctag 46  Q
    ||||||||||||||||||||||||| | |||||||||||| |||||    
T  29169895 tacatagagttcaaaaggtcatgcacagcaatgtcatgtctcctag 29169940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 54 - 123
Target Start/End: Complemental strand, 30688509 - 30688440
Alignment:
Q  54 aatgttgtgtttacgaggatttgttttgccatctaaaaaggcttcgcaacgcagcttgttgctcgcttgc 123  Q
    ||||||||||||||||||||| ||||||  ||| |||||||| | ||  ||||||||||||| |||||||    
T  30688509 aatgttgtgtttacgaggattggttttgttatccaaaaaggcctagcggcgcagcttgttgcccgcttgc 30688440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 54 - 94
Target Start/End: Original strand, 1114023 - 1114063
Alignment:
Q  54 aatgttgtgtttacgaggatttgttttgccatctaaaaagg 94  Q
    ||||||||||||||||||||| ||||||||||| |||||||    
T  1114023 aatgttgtgtttacgaggattggttttgccatccaaaaagg 1114063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 6 - 93
Target Start/End: Original strand, 35550182 - 35550269
Alignment:
Q  6 agagttcaaaaggtcatgcataacaatgtcatgtcccctaggtttgtaaatgttgtgtttacgaggatttgttttgccatctaaaaag 93  Q
    |||||| ||| | ||||| |||||||||| ||||||| || |||| | ||||||||||||| |||||||  |||| | ||||||||||    
T  35550182 agagtttaaaggatcatgtataacaatgttatgtcccttatgtttattaatgttgtgtttaagaggattgattttacaatctaaaaag 35550269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 14 - 93
Target Start/End: Original strand, 45835301 - 45835380
Alignment:
Q  14 aaaggtcatgcataacaatgtcatgtcccctaggtttgtaaatgttgtgtttacgaggatttgttttgccatctaaaaag 93  Q
    |||||||||| || ||| |||||| ||  |||||| | | |||||||||||||||||||||  |||||||||| ||||||    
T  45835301 aaaggtcatgtattacattgtcatctcttctaggtctatgaatgttgtgtttacgaggattgattttgccatccaaaaag 45835380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 54 - 123
Target Start/End: Complemental strand, 5454047 - 5453978
Alignment:
Q  54 aatgttgtgtttacgaggatttgttttgccatctaaaaaggcttcgcaacgcagcttgttgctcgcttgc 123  Q
    |||||||||||||| |||||| |||||| |||| |||||||  | ||  ||||||||||||| |||||||    
T  5454047 aatgttgtgtttacaaggattggttttgtcatccaaaaaggtctagcggcgcagcttgttgcccgcttgc 5453978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 1 - 70
Target Start/End: Complemental strand, 38731614 - 38731545
Alignment:
Q  1 tacatagagttcaaaaggtcatgcataacaatgtcatgtcccctaggtttgtaaatgttgtgtttacgag 70  Q
    ||||||||||||||| ||||||||| || ||||||||| | |||||||   | ||| |||||||||||||    
T  38731614 tacatagagttcaaagggtcatgcacaataatgtcatgactcctaggtccatgaatattgtgtttacgag 38731545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 113
Target Start/End: Complemental strand, 2764484 - 2764372
Alignment:
Q  1 tacatagagttcaaaaggtcatgcataacaatgtcatgtcccctaggtttgtaaatgttgtgtttacgaggatttgttttgccatctaaaaaggcttcgc 100  Q
    |||||| ||| |||| ||| ||||| | |||||| ||||| | |||||   |||||||||||||||||| ||||  |||| ||||| ||||||| || ||    
T  2764484 tacataaagtccaaagggttatgcaaatcaatgttatgtctcttaggtccataaatgttgtgtttacgatgattgattttaccatccaaaaaggtttagc 2764385  T
Q  101 aacgcagcttgtt 113  Q
      |||||||||||    
T  2764384 ggcgcagcttgtt 2764372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 35387758 - 35387802
Alignment:
Q  1 tacatagagttcaaaaggtcatgcataacaatgtcatgtccccta 45  Q
    ||||||||||||||| || |||||||| |||||||||||| ||||    
T  35387758 tacatagagttcaaagggacatgcatatcaatgtcatgtctccta 35387802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0009 (Bit Score: 55; Significance: 9e-23; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 1 - 123
Target Start/End: Complemental strand, 103111 - 102989
Alignment:
Q  1 tacatagagttcaaaaggtcatgcataacaatgtcatgtcccctaggtttgtaaatgttgtgtttacgaggatttgttttgccatctaaaaaggcttcgc 100  Q
    ||||| ||| ||||||||||||||||||||||||| |||| |||||||   | ||||||||||||||||||||| ||||||||||| |||||||  | ||    
T  103111 tacatcgagctcaaaaggtcatgcataacaatgtcgtgtctcctaggtccatgaatgttgtgtttacgaggattggttttgccatccaaaaaggtctagc 103012  T
Q  101 aacgcagcttgttgctcgcttgc 123  Q
      |||| |||||||| |||||||    
T  103011 ggcgcaacttgttgcccgcttgc 102989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 54; Significance: 4e-22; HSPs: 12)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 1 - 94
Target Start/End: Complemental strand, 32115723 - 32115630
Alignment:
Q  1 tacatagagttcaaaaggtcatgcataacaatgtcatgtcccctaggtttgtaaatgttgtgtttacgaggatttgttttgccatctaaaaagg 94  Q
    |||| ||||||||||||||||||||||||||||||||||| |||||||   | |||||||||||||||| ||||  |||||| |||||||||||    
T  32115723 tacaaagagttcaaaaggtcatgcataacaatgtcatgtctcctaggtccatgaatgttgtgtttacgatgattgattttgctatctaaaaagg 32115630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 17 - 115
Target Start/End: Original strand, 3137365 - 3137463
Alignment:
Q  17 ggtcatgcataacaatgtcatgtcccctaggtttgtaaatgttgtgtttacgaggatttgttttgccatctaaaaaggcttcgcaacgcagcttgttgc 115  Q
    ||||||||||| |||||||||||| |||||||   | ||||||||||||||||||||| ||||||||||| |||||||||| |||  ||| ||||||||    
T  3137365 ggtcatgcatagcaatgtcatgtctcctaggtccatgaatgttgtgtttacgaggattggttttgccatccaaaaaggcttagcagtgcaacttgttgc 3137463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 1 - 91
Target Start/End: Original strand, 4166024 - 4166114
Alignment:
Q  1 tacatagagttcaaaaggtcatgcataacaatgtcatgtcccctaggtttgtaaatgttgtgtttacgaggatttgttttgccatctaaaa 91  Q
    ||||||||||| |||||||||||||| ||||||||||||| |||||||   ||||| | ||||||||||||||| ||||||||||| ||||    
T  4166024 tacatagagtttaaaaggtcatgcatgacaatgtcatgtcacctaggtcaataaatatagtgtttacgaggattggttttgccatccaaaa 4166114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 1 - 91
Target Start/End: Original strand, 4206698 - 4206788
Alignment:
Q  1 tacatagagttcaaaaggtcatgcataacaatgtcatgtcccctaggtttgtaaatgttgtgtttacgaggatttgttttgccatctaaaa 91  Q
    |||||||||||||||||||||||||| ||||||||||||| |||||||   | ||| | ||||||||||||||| ||||||||||| ||||    
T  4206698 tacatagagttcaaaaggtcatgcatgacaatgtcatgtcacctaggtcaatgaatatagtgtttacgaggattggttttgccatccaaaa 4206788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 8 - 95
Target Start/End: Complemental strand, 959579 - 959492
Alignment:
Q  8 agttcaaaaggtcatgcataacaatgtcatgtcccctaggtttgtaaatgttgtgtttacgaggatttgttttgccatctaaaaaggc 95  Q
    |||||||||||||||||||| ||||||  |||| |||||||   | |||||||||||||||||||||  ||||| |||||||||||||    
T  959579 agttcaaaaggtcatgcatagcaatgttgtgtctcctaggtccatgaatgttgtgtttacgaggattgattttgtcatctaaaaaggc 959492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 123
Target Start/End: Original strand, 17249407 - 17249529
Alignment:
Q  1 tacatagagttcaaaaggtcatgcataacaatgtcatgtcccctaggtttgtaaatgttgtgtttacgaggatttgttttgccatctaaaaaggcttcgc 100  Q
    |||||||||| |||| | | ||| ||| |||||| ||||| |||| |||  | ||||||||||||||||||||| ||||||||||| |||||||  | ||    
T  17249407 tacatagagtccaaaggattatgtatagcaatgttatgtctcctaagttcatgaatgttgtgtttacgaggattggttttgccatccaaaaaggtctagc 17249506  T
Q  101 aacgcagcttgttgctcgcttgc 123  Q
      ||||||||||||| |||||||    
T  17249507 ggcgcagcttgttgcccgcttgc 17249529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 5 - 93
Target Start/End: Complemental strand, 28543398 - 28543310
Alignment:
Q  5 tagagttcaaaaggtcatgcataacaatgtcatgtcccctaggtttgtaaatgttgtgtttacgaggatttgttttgccatctaaaaag 93  Q
    |||||| |||||||||||| | |||||||| ||||  |||||||   ||||| || |||||| ||||||| |||||||||||| |||||    
T  28543398 tagagtccaaaaggtcatgtaaaacaatgttatgtttcctaggtccataaatattatgtttaagaggattggttttgccatctgaaaag 28543310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 85
Target Start/End: Complemental strand, 28625935 - 28625852
Alignment:
Q  1 tacatagagttcaaaaggtcatgcataacaatgtcatgtcccctaggtttgtaaatgttgtgtttacgaggatttgttttgccat 85  Q
    |||||| |||||||||||||||||||||| ||||||| || | ||||| | | |||||||||||||||  ||||  |||||||||    
T  28625935 tacataaagttcaaaaggtcatgcataac-atgtcatatctcataggtctatgaatgttgtgtttacggagattgattttgccat 28625852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 40
Target Start/End: Original strand, 45779 - 45818
Alignment:
Q  1 tacatagagttcaaaaggtcatgcataacaatgtcatgtc 40  Q
    ||||||||||||||||||||||||||| |||||| |||||    
T  45779 tacatagagttcaaaaggtcatgcatagcaatgttatgtc 45818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 54 - 123
Target Start/End: Complemental strand, 7749433 - 7749364
Alignment:
Q  54 aatgttgtgtttacgaggatttgttttgccatctaaaaaggcttcgcaacgcagcttgttgctcgcttgc 123  Q
    ||||||||||||||||||||| |||||||||||  ||||||  | ||   |||||||||||| |||||||    
T  7749433 aatgttgtgtttacgaggattggttttgccatcctaaaaggtctagcggtgcagcttgttgcccgcttgc 7749364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 1 - 82
Target Start/End: Complemental strand, 24016342 - 24016261
Alignment:
Q  1 tacatagagttcaaaaggtcatgcataacaatgtcatgtcccctaggtttgtaaatgttgtgtttacgaggatttgttttgc 82  Q
    ||||||||||||||| ||||||||| || ||||||||||| |||| ||   ||||| || |||||||||  ||| |||||||    
T  24016342 tacatagagttcaaagggtcatgcacaagaatgtcatgtctcctaagtacataaatattatgtttacgataattggttttgc 24016261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 1 - 94
Target Start/End: Complemental strand, 34304501 - 34304408
Alignment:
Q  1 tacatagagttcaaaaggtcatgcataacaatgtcatgtcccctaggtttgtaaatgttgtgtttacgaggatttgttttgccatctaaaaagg 94  Q
    |||||||||| ||||  || ||||||| |||| ||||||| | ||||| | | |||||||| ||||||||||||  |||||| ||| |||||||    
T  34304501 tacatagagtccaaagagttatgcatagcaatatcatgtctcataggtctatgaatgttgtatttacgaggattgattttgcaatccaaaaagg 34304408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 54; Significance: 4e-22; HSPs: 15)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 1 - 94
Target Start/End: Original strand, 2566197 - 2566290
Alignment:
Q  1 tacatagagttcaaaaggtcatgcataacaatgtcatgtcccctaggtttgtaaatgttgtgtttacgaggatttgttttgccatctaaaaagg 94  Q
    ||||||||||||||||||||||||||| |||||||||||| ||||| |   | |||||||||||||||||||||  |||||||||| |||||||    
T  2566197 tacatagagttcaaaaggtcatgcatagcaatgtcatgtctcctagatccatcaatgttgtgtttacgaggattgattttgccatccaaaaagg 2566290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 1 - 92
Target Start/End: Original strand, 22188757 - 22188848
Alignment:
Q  1 tacatagagttcaaaaggtcatgcataacaatgtcatgtcccctaggtttgtaaatgttgtgtttacgaggatttgttttgccatctaaaaa 92  Q
    |||||||||||||||||||||||||||||||| ||||||| ||||| ||  | ||||||||||||||||| ||| |||||| |||| |||||    
T  22188757 tacatagagttcaaaaggtcatgcataacaatatcatgtctcctagattcatgaatgttgtgtttacgagaattggttttgtcatccaaaaa 22188848  T

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Target: chr5; HSP #3
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 8 - 92
Target Start/End: Original strand, 32269906 - 32269990
Alignment:
Q  8 agttcaaaaggtcatgcataacaatgtcatgtcccctaggtttgtaaatgttgtgtttacgaggatttgttttgccatctaaaaa 92  Q
    |||||||||||||||||||| |||||||||||| |||||||   | |||||||||||||||||||||  ||| |||||| |||||    
T  32269906 agttcaaaaggtcatgcatagcaatgtcatgtctcctaggtccatgaatgttgtgtttacgaggattgatttcgccatccaaaaa 32269990  T

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Target: chr5; HSP #4
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 1 - 93
Target Start/End: Complemental strand, 42921702 - 42921611
Alignment:
Q  1 tacatagagttcaaaaggtcatgcataacaatgtcatgtcccctaggtttgtaaatgttgtgtttacgaggatttgttttgccatctaaaaag 93  Q
    ||||||||||||| |||||||||||||||||||||||||| |||| ||   | ||| |||||||||| |||||| ||||||||||| ||||||    
T  42921702 tacatagagttcagaaggtcatgcataacaatgtcatgtctcctaagtccat-aatattgtgtttacaaggattggttttgccatccaaaaag 42921611  T

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Target: chr5; HSP #5
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 123
Target Start/End: Original strand, 25663134 - 25663256
Alignment:
Q  1 tacatagagttcaaaaggtcatgcataacaatgtcatgtcccctaggtttgtaaatgttgtgtttacgaggatttgttttgccatctaaaaaggcttcgc 100  Q
    |||||||||| |||| ||| ||||||| |||||| |||||||||||||   | ||||||| ||||||||||||| | |||| |||| |||||||  |  |    
T  25663134 tacatagagtccaaagggttatgcatatcaatgttatgtcccctaggtccatgaatgttgagtttacgaggattggctttgtcatccaaaaaggtctaac 25663233  T
Q  101 aacgcagcttgttgctcgcttgc 123  Q
     ||||||||||||||||| ||||    
T  25663234 gacgcagcttgttgctcgtttgc 25663256  T

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Target: chr5; HSP #6
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 123
Target Start/End: Complemental strand, 35310453 - 35310331
Alignment:
Q  1 tacatagagttcaaaaggtcatgcataacaatgtcatgtcccctaggtttgtaaatgttgtgtttacgaggatttgttttgccatctaaaaaggcttcgc 100  Q
    |||||||||| |||| |||  |||||| |||||| ||||| |||||||   | ||||||||||||||||| ||| ||||||||||| ||| ||| ||  |    
T  35310453 tacatagagtccaaagggttttgcatatcaatgttatgtctcctaggtccatgaatgttgtgtttacgagaattggttttgccatccaaagaggtttaac 35310354  T
Q  101 aacgcagcttgttgctcgcttgc 123  Q
     |||||||||||||| |||||||    
T  35310353 gacgcagcttgttgcccgcttgc 35310331  T

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Target: chr5; HSP #7
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 95
Target Start/End: Original strand, 37873740 - 37873834
Alignment:
Q  1 tacatagagttcaaaaggtcatgcataacaatgtcatgtcccctaggtttgtaaatgttgtgtttacgaggatttgttttgccatctaaaaaggc 95  Q
    ||||||||||||||| ||||||||| |||||||||||| |  |||||| | | ||||||||||||| |||||||  |||||| ||| ||||||||    
T  37873740 tacatagagttcaaagggtcatgcagaacaatgtcatgacttctaggtctatgaatgttgtgtttaagaggattgattttgctatcaaaaaaggc 37873834  T

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Target: chr5; HSP #8
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 10 - 95
Target Start/End: Complemental strand, 23023591 - 23023506
Alignment:
Q  10 ttcaaaaggtcatgcataacaatgtcatgtcccctaggtttgtaaatgttgtgtttacgaggatttgttttgccatctaaaaaggc 95  Q
    |||||||||||||||||| |||||||||||| |||||||   | |||||||||||||||| ||||  ||||| |||| ||||||||    
T  23023591 ttcaaaaggtcatgcatatcaatgtcatgtctcctaggtcgatgaatgttgtgtttacgaagattgattttgtcatccaaaaaggc 23023506  T

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Target: chr5; HSP #9
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 8 - 115
Target Start/End: Original strand, 15292134 - 15292241
Alignment:
Q  8 agttcaaaaggtcatgcataacaatgtcatgtcccctaggtttgtaaatgttgtgtttacgaggatttgttttgccatctaaaaaggcttcgcaacgcag 107  Q
    |||||||||||||||||||| ||||||||  || |||||||   | ||||||||||||| |||||||  |||||||||| ||||| |||| ||  |||||    
T  15292134 agttcaaaaggtcatgcatagcaatgtcacatctcctaggtccatgaatgttgtgtttatgaggattgattttgccatccaaaaaagcttggcggcgcag 15292233  T
Q  108 cttgttgc 115  Q
     |||||||    
T  15292234 tttgttgc 15292241  T

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Target: chr5; HSP #10
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 59 - 123
Target Start/End: Complemental strand, 11005825 - 11005761
Alignment:
Q  59 tgtgtttacgaggatttgttttgccatctaaaaaggcttcgcaacgcagcttgttgctcgcttgc 123  Q
    ||||||||| |||||| ||||||||||| |||||||||| ||  ||||||||||||| |||||||    
T  11005825 tgtgtttactaggattggttttgccatccaaaaaggcttagcggcgcagcttgttgcccgcttgc 11005761  T

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Target: chr5; HSP #11
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 6 - 77
Target Start/End: Original strand, 3114247 - 3114318
Alignment:
Q  6 agagttcaaaaggtcatgcataacaatgtcatgtcccctaggtttgtaaatgttgtgtttacgaggatttgt 77  Q
    |||||||||| ||||||||| |||||||||||  | || |||| ||| |||||||||||||||| |||||||    
T  3114247 agagttcaaagggtcatgcacaacaatgtcataactccaaggtctgtgaatgttgtgtttacgaagatttgt 3114318  T

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Target: chr5; HSP #12
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 4 - 83
Target Start/End: Complemental strand, 15833064 - 15832985
Alignment:
Q  4 atagagttcaaaaggtcatgcataacaatgtcatgtcccctaggtttgtaaatgttgtgtttacgaggatttgttttgcc 83  Q
    |||||||||||| ||||||| |||||||||||| ||| ||||| ||  | ||||| ||||| ||||||||| ||||||||    
T  15833064 atagagttcaaatggtcatgtataacaatgtcacgtctcctagattcatgaatgtcgtgttcacgaggattagttttgcc 15832985  T

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Target: chr5; HSP #13
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 5 - 48
Target Start/End: Complemental strand, 38875639 - 38875596
Alignment:
Q  5 tagagttcaaaaggtcatgcataacaatgtcatgtcccctaggt 48  Q
    ||||||||||||||||||||||||||||||| |||| |||||||    
T  38875639 tagagttcaaaaggtcatgcataacaatgtcttgtctcctaggt 38875596  T

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Target: chr5; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 6 - 92
Target Start/End: Complemental strand, 16017173 - 16017087
Alignment:
Q  6 agagttcaaaaggtcatgcataacaatgtcatgtcccctaggtttgtaaatgttgtgtttacgaggatttgttttgccatctaaaaa 92  Q
    |||||||||||||||||||||| ||||||  |||| ||||||||| |   ||| || |||| || ||||  ||||||||||||||||    
T  16017173 agagttcaaaaggtcatgcatagcaatgttgtgtctcctaggtttatgggtgtggtttttaagatgattgattttgccatctaaaaa 16017087  T

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Target: chr5; HSP #15
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 1 - 94
Target Start/End: Complemental strand, 430607 - 430514
Alignment:
Q  1 tacatagagttcaaaaggtcatgcataacaatgtcatgtcccctaggtttgtaaatgttgtgtttacgaggatttgttttgccatctaaaaagg 94  Q
    |||||||| | |||| ||| |||||||  ||||| ||||| |||||||   | |||||||||||||||||||||  || ||||||| |||||||    
T  430607 tacatagattccaaagggttatgcatagtaatgttatgtctcctaggtccatgaatgttgtgtttacgaggattgattatgccatccaaaaagg 430514  T

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Target: scaffold1768 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: scaffold1768
Description:

Target: scaffold1768; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 3 - 97
Target Start/End: Original strand, 288 - 382
Alignment:
Q  3 catagagttcaaaaggtcatgcataacaatgtcatgtcccctaggtttgtaaatgttgtgtttacgaggatttgttttgccatctaaaaaggctt 97  Q
    |||| ||||||||| ||||| |||| |||||||||||| ||||| |   | || |||||||||||||||||| ||||||||||| ||||||||||    
T  288 cataaagttcaaaaagtcatacatagcaatgtcatgtctcctagatcgatgaacgttgtgtttacgaggattagttttgccatccaaaaaggctt 382  T

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Target: scaffold0148 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: scaffold0148
Description:

Target: scaffold0148; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 115
Target Start/End: Complemental strand, 33255 - 33141
Alignment:
Q  1 tacatagagttcaaaaggtcatgcataacaatgtcatgtcccctaggtttgtaaatgttgtgtttacgaggatttgttttgccatctaaaaaggcttcgc 100  Q
    ||||||||||||||||||||||||||| |||| | ||||| |||||||   | || || |||||||||||||||  ||||| |||| |||||||||| ||    
T  33255 tacatagagttcaaaaggtcatgcatagcaattttatgtctcctaggtccatgaacgtcgtgtttacgaggattgattttgtcatccaaaaaggcttggc 33156  T
Q  101 aacgcagcttgttgc 115  Q
       ||||||||||||    
T  33155 ggtgcagcttgttgc 33141  T

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Target: scaffold0490 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 1)
Name: scaffold0490
Description:

Target: scaffold0490; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 1 - 48
Target Start/End: Complemental strand, 6339 - 6292
Alignment:
Q  1 tacatagagttcaaaaggtcatgcataacaatgtcatgtcccctaggt 48  Q
    ||||||||||||||||||||||||||| |||||||||||| |||||||    
T  6339 tacatagagttcaaaaggtcatgcatagcaatgtcatgtctcctaggt 6292  T

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Target: scaffold0406 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0406
Description:

Target: scaffold0406; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 52 - 123
Target Start/End: Complemental strand, 6842 - 6771
Alignment:
Q  52 taaatgttgtgtttacgaggatttgttttgccatctaaaaaggcttcgcaacgcagcttgttgctcgcttgc 123  Q
    |||| |||||||||||||| ||| ||||||||||| |||||||  | ||  ||||||||||||| |||||||    
T  6842 taaaagttgtgtttacgagaattggttttgccatccaaaaaggtctagcgccgcagcttgttgcccgcttgc 6771  T

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Target: scaffold0470 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0470
Description:

Target: scaffold0470; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 3 - 93
Target Start/End: Complemental strand, 7605 - 7516
Alignment:
Q  3 catagagttcaaaaggtcatgcataacaatgtcatgtcccctaggtttgtaaatgttgtgtttacgaggatttgttttgccatctaaaaag 93  Q
    ||||| |||||||||||||||||| | ||||||||||| | |||||   | |||||| |||||||||| ||| |||||| |||| ||||||    
T  7605 catagcgttcaaaaggtcatgcat-ataatgtcatgtctcataggtccatgaatgttatgtttacgagtattggttttgtcatccaaaaag 7516  T

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Target: scaffold0031 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0031
Description:

Target: scaffold0031; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 2 - 40
Target Start/End: Complemental strand, 49419 - 49381
Alignment:
Q  2 acatagagttcaaaaggtcatgcataacaatgtcatgtc 40  Q
    |||||||||||||| | ||||||||||||||||||||||    
T  49419 acatagagttcaaaggatcatgcataacaatgtcatgtc 49381  T

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Target: scaffold0309 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0309
Description:

Target: scaffold0309; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 53 - 125
Target Start/End: Complemental strand, 5277 - 5205
Alignment:
Q  53 aaatgttgtgtttacgaggatttgttttgccatctaaaaaggcttcgcaacgcagcttgttgctcgcttgcat 125  Q
    |||||||||||| |||||||||   ||||||||| |||||||  | ||  ||||||||||||| |||||||||    
T  5277 aaatgttgtgttcacgaggattgactttgccatccaaaaaggtctagcggcgcagcttgttgcccgcttgcat 5205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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