View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3887_high_3 (Length: 301)
Name: NF3887_high_3
Description: NF3887
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3887_high_3 |
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Alignment Details
Target: chr7 (Bit Score: 277; Significance: 1e-155; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 18 - 294
Target Start/End: Complemental strand, 44716628 - 44716352
Alignment:
| Q |
18 |
atttgatgtaccattcaggatgtgtgtgaaggaaggaaaagtagctagtgtcatgtgttcttacaatcaagtaaatggggtccctacatgtgctgatcct |
117 |
Q |
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| T |
44716628 |
atttgatgtaccattcaggatgtgtgtgaaggaaggaaaagtagctagtgtcatgtgttcttacaatcaagtaaatggggtccctacatgtgctgatcct |
44716529 |
T |
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| Q |
118 |
aacctcttaaagaaaacagttcgtggagtatggggtcttgatgggtaagctcaatagtatacaattatcatatccacgttggacaattgccttatctcat |
217 |
Q |
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| T |
44716528 |
aacctcttaaagaaaacagttcgtggagtatggggtcttgatgggtaagctcaatagtatacaattatcatatccacgttggacaattgccttatctcat |
44716429 |
T |
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| Q |
218 |
tatcaagtaaaaataatgttatcttttgctttacttggggttgatttaggtacattgtatctgattgtgactctgtg |
294 |
Q |
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| T |
44716428 |
tatcaagtaaaaataatgttatcttttgctttacttggggttgatttaggtacattgtatctgattgtgactctgtg |
44716352 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 58; Significance: 2e-24; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 23 - 168
Target Start/End: Original strand, 39089035 - 39089180
Alignment:
| Q |
23 |
atgtaccattcaggatgtgtgtgaaggaaggaaaagtagctagtgtcatgtgttcttacaatcaagtaaatggggtccctacatgtgctgatcctaacct |
122 |
Q |
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| T |
39089035 |
atgtgccatttaggatgtgtgtgaaggaaggtaatgtggctagtgtgatgtgttcttacaatcaggttaatggtgtccctacttgtgctgaccccaatct |
39089134 |
T |
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| Q |
123 |
cttaaagaaaacagttcgtggagtatggggtcttgatgggtaagct |
168 |
Q |
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| T |
39089135 |
tctaaagagaacaattcgtggtcaatggcatcttgatgggtaagct |
39089180 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 261 - 293
Target Start/End: Original strand, 39089250 - 39089282
Alignment:
| Q |
261 |
atttaggtacattgtatctgattgtgactctgt |
293 |
Q |
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| T |
39089250 |
atttaggtacattgtatcagattgtgactctgt |
39089282 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 52 - 95
Target Start/End: Original strand, 37610615 - 37610658
Alignment:
| Q |
52 |
ggaaaagtagctagtgtcatgtgttcttacaatcaagtaaatgg |
95 |
Q |
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| T |
37610615 |
ggaaatgtagctagtgttatgtgttcctacaatcaagtaaatgg |
37610658 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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