View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3887_high_6 (Length: 250)
Name: NF3887_high_6
Description: NF3887
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3887_high_6 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 218; Significance: 1e-120; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 8 - 250
Target Start/End: Complemental strand, 3311146 - 3310902
Alignment:
| Q |
8 |
aagcaaaggagcatttaagagtagtgtctctttcttgacctctcacacacgccacacacaacatgtacaaaaggctgctccatgtccaagcctcatattt |
107 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3311146 |
aagcaaaggagcatttaagagtagtgtctctttcttgacctctcacacacgccacacacaacatgtacaaaaggctgctccatgtccaagcctcatattt |
3311047 |
T |
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| Q |
108 |
gtcatttatgaagatatttttacagttgaaaaccctctcactcagacctagtttatagttcaatctgcaaaagcagcagcactcatttctcctctctatc |
207 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||| |
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| T |
3311046 |
gtcatttatgaagatatttttacagttgaaaaccctctcactcagacctagtttatagtgcaatctgcaaaagcagcaacactcatttctcctctctatc |
3310947 |
T |
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| Q |
208 |
ctcacatatcaatcatcag--tttaacgagatctgatgacatgcc |
250 |
Q |
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||||||||||| | ||||| |||||||||||||||||||||||| |
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| T |
3310946 |
ctcacatatcagttatcagtttttaacgagatctgatgacatgcc |
3310902 |
T |
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