View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3887_low_1 (Length: 572)

Name: NF3887_low_1
Description: NF3887
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3887_low_1
NF3887_low_1
[»] chr5 (27 HSPs)
chr5 (308-468)||(25653611-25653768)
chr5 (11-171)||(25653929-25654104)
chr5 (308-499)||(36055738-36055923)
chr5 (308-501)||(22616491-22616677)
chr5 (308-442)||(31878436-31878567)
chr5 (308-440)||(41417443-41417572)
chr5 (308-501)||(12081131-12081324)
chr5 (309-427)||(10053291-10053406)
chr5 (313-442)||(10237467-10237593)
chr5 (308-446)||(21320800-21320935)
chr5 (308-371)||(33163636-33163699)
chr5 (308-380)||(21266131-21266203)
chr5 (308-446)||(26411346-26411481)
chr5 (308-495)||(13380498-13380683)
chr5 (308-380)||(13887353-13887425)
chr5 (308-415)||(27579108-27579212)
chr5 (308-429)||(33752912-33753030)
chr5 (308-498)||(33848551-33848739)
chr5 (308-380)||(8777277-8777349)
chr5 (313-380)||(25513887-25513954)
chr5 (308-346)||(25521707-25521745)
chr5 (445-504)||(22974203-22974263)
chr5 (503-556)||(25652533-25652582)
chr5 (445-498)||(15724490-15724544)
chr5 (445-502)||(19119855-19119913)
chr5 (445-501)||(8742008-8742065)
chr5 (445-496)||(25501047-25501099)
[»] chr6 (9 HSPs)
chr6 (308-503)||(11084018-11084205)
chr6 (309-500)||(19631747-19631932)
chr6 (308-446)||(26301789-26301922)
chr6 (308-419)||(34993907-34994015)
chr6 (309-380)||(30341136-30341207)
chr6 (308-380)||(4488446-4488518)
chr6 (308-380)||(25441074-25441146)
chr6 (333-370)||(4103033-4103070)
chr6 (445-502)||(4318953-4319011)
[»] chr2 (26 HSPs)
chr2 (308-496)||(41643874-41644056)
chr2 (308-500)||(34441787-34441971)
chr2 (308-499)||(19073356-19073542)
chr2 (313-500)||(6177773-6177954)
chr2 (308-442)||(15650901-15651032)
chr2 (308-442)||(18779263-18779396)
chr2 (308-492)||(30844850-30845031)
chr2 (308-497)||(42005390-42005571)
chr2 (308-446)||(41713213-41713346)
chr2 (309-442)||(18059227-18059357)
chr2 (308-441)||(27138885-27139014)
chr2 (308-499)||(43446322-43446511)
chr2 (310-362)||(38250000-38250052)
chr2 (348-498)||(22963400-22963548)
chr2 (386-494)||(18947537-18947642)
chr2 (308-380)||(32651949-32652021)
chr2 (309-380)||(40913164-40913235)
chr2 (348-498)||(22997929-22998077)
chr2 (308-372)||(7553474-7553538)
chr2 (313-424)||(58097-58204)
chr2 (463-500)||(31570902-31570939)
chr2 (312-380)||(6348832-6348900)
chr2 (308-364)||(39788474-39788530)
chr2 (463-503)||(2325538-2325578)
chr2 (308-340)||(18947474-18947506)
chr2 (462-498)||(31861895-31861931)
[»] chr8 (12 HSPs)
chr8 (308-501)||(4108778-4108963)
chr8 (308-439)||(3038462-3038590)
chr8 (311-440)||(7290774-7290900)
chr8 (308-496)||(35735845-35736030)
chr8 (308-433)||(6267369-6267491)
chr8 (314-370)||(18756537-18756593)
chr8 (308-348)||(23176650-23176690)
chr8 (308-356)||(1879090-1879138)
chr8 (319-370)||(30380989-30381040)
chr8 (308-356)||(1835249-1835297)
chr8 (333-371)||(34463537-34463575)
chr8 (445-500)||(43643732-43643788)
[»] chr4 (22 HSPs)
chr4 (308-440)||(1012351-1012481)
chr4 (308-455)||(33036066-33036209)
chr4 (309-500)||(54995664-54995849)
chr4 (308-442)||(2266720-2266851)
chr4 (348-497)||(51204580-51204727)
chr4 (308-373)||(2707992-2708057)
chr4 (82-171)||(28292926-28293014)
chr4 (386-496)||(20097426-20097537)
chr4 (308-442)||(17612388-17612518)
chr4 (308-427)||(17513010-17513126)
chr4 (308-446)||(9743637-9743772)
chr4 (308-370)||(2570600-2570662)
chr4 (308-440)||(22756796-22756924)
chr4 (308-431)||(22729775-22729894)
chr4 (335-498)||(28293124-28293285)
chr4 (308-380)||(5915659-5915731)
chr4 (386-500)||(2704510-2704619)
chr4 (308-380)||(37793496-37793568)
chr4 (308-350)||(5812709-5812751)
chr4 (308-365)||(47236989-47237046)
chr4 (445-499)||(37287732-37287788)
chr4 (309-360)||(33255572-33255621)
[»] chr1 (17 HSPs)
chr1 (308-499)||(13876783-13876968)
chr1 (308-440)||(27118385-27118514)
chr1 (308-442)||(10758164-10758295)
chr1 (308-436)||(16132534-16132659)
chr1 (315-442)||(16127573-16127695)
chr1 (308-441)||(15964154-15964284)
chr1 (308-500)||(421386-421577)
chr1 (308-380)||(21263909-21263981)
chr1 (308-446)||(25943247-25943382)
chr1 (308-426)||(31804948-31805063)
chr1 (308-447)||(28012114-28012251)
chr1 (308-454)||(17695871-17696020)
chr1 (381-492)||(34491439-34491551)
chr1 (445-504)||(1547277-1547337)
chr1 (445-502)||(37619022-37619080)
chr1 (465-501)||(4964062-4964098)
chr1 (463-507)||(48620624-48620668)
[»] chr3 (25 HSPs)
chr3 (309-500)||(40640496-40640684)
chr3 (308-498)||(49359492-49359676)
chr3 (308-440)||(7568583-7568712)
chr3 (308-499)||(45879351-45879547)
chr3 (308-442)||(44880844-44880974)
chr3 (308-497)||(19606778-19606961)
chr3 (308-500)||(38392492-38392678)
chr3 (308-502)||(32180615-32180799)
chr3 (308-498)||(42204342-42204528)
chr3 (335-495)||(4556543-4556702)
chr3 (308-380)||(7758287-7758359)
chr3 (333-429)||(53811865-53811958)
chr3 (308-474)||(43485331-43485495)
chr3 (308-380)||(47870304-47870375)
chr3 (308-498)||(47930531-47930714)
chr3 (308-380)||(48155077-48155149)
chr3 (308-497)||(26000525-26000716)
chr3 (29-82)||(47870478-47870531)
chr3 (308-371)||(51878235-51878298)
chr3 (308-441)||(54606760-54606890)
chr3 (309-355)||(11018554-11018600)
chr3 (386-441)||(18272163-18272218)
chr3 (420-502)||(47870210-47870293)
chr3 (462-499)||(7327632-7327669)
chr3 (308-380)||(29895976-29896048)
[»] chr7 (13 HSPs)
chr7 (308-498)||(8133423-8133609)
chr7 (308-499)||(22955176-22955361)
chr7 (308-446)||(7742968-7743103)
chr7 (308-442)||(37854160-37854289)
chr7 (313-498)||(23402240-23402419)
chr7 (308-466)||(4618619-4618770)
chr7 (308-446)||(5781567-5781700)
chr7 (308-436)||(19786343-19786468)
chr7 (308-446)||(49002275-49002408)
chr7 (308-364)||(40382016-40382073)
chr7 (308-347)||(4902465-4902504)
chr7 (419-500)||(40381938-40382016)
chr7 (308-356)||(8758426-8758474)
[»] scaffold0200 (1 HSPs)
scaffold0200 (313-499)||(24686-24866)
[»] scaffold0050 (1 HSPs)
scaffold0050 (308-440)||(5645-5774)
[»] scaffold0312 (1 HSPs)
scaffold0312 (308-500)||(8995-9185)
[»] scaffold0262 (2 HSPs)
scaffold0262 (309-371)||(12031-12093)
scaffold0262 (450-498)||(12137-12186)
[»] scaffold0001 (1 HSPs)
scaffold0001 (29-62)||(65362-65395)


Alignment Details
Target: chr5 (Bit Score: 123; Significance: 6e-63; HSPs: 27)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 123; E-Value: 6e-63
Query Start/End: Original strand, 308 - 468
Target Start/End: Complemental strand, 25653768 - 25653611
Alignment:
308 gtttaattttgatttaatcagggacacaattgcaataagtaaagatataatgacacaccttatgagcaaatgtcgtgtaatacaccatacaatctgacgc 407  Q
    |||||||||||||||||||||||| | | ||||||||||||||||||||||||||||||||||||||||||||   | |||||||||||||||||||||     
25653768 gtttaattttgatttaatcagggaaatagttgcaataagtaaagatataatgacacaccttatgagcaaatgt---gcaatacaccatacaatctgacgt 25653672  T
408 gacatgaattaaatacacaaatactcaatgattgatcatagagttaactttaccaaaaagt 468  Q
    || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
25653671 gatatgaattaaatacacaaatactcaatgattgatcatagagttaactttaccaaaaagt 25653611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 11 - 171
Target Start/End: Complemental strand, 25654104 - 25653929
Alignment:
11 caaaggacggaagtgattaaaggtatggttggtgttggaccagatgaattttt-gagcgaagggtatgaacaaa--------------gatgataagatt 95  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||| |||  || ||||||||||||              ||||||||||||    
25654104 caaaggacggaagtgattaaaggtatggatggtgttggaccagatgaattttttgagtaaaaggtatgaacaaatttgaactgatgaagatgataagatt 25654005  T
96 ttggagtgaaagggagtgaaataatgacaaaataagatgataaaattttggagttaaaggaactaatgaagatgaa 171  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||    
25654004 ttggagtgaaagggagtgaaataatgacaaaataagatgataaaattttggagttaaaggaactgatgaaaatgaa 25653929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 308 - 499
Target Start/End: Original strand, 36055738 - 36055923
Alignment:
308 gtttaattttgatttaatcagggacacaattgcaataagtaaagatataatgacacaccttatgagcaaatgtcgtgtaatacaccatacaatctgacgc 407  Q
    ||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||   ||| ||||||||||  ||||||| ||    
36055738 gtttaattttgatttaatcggggacacaattgtaataagtaaagatataatgacacaccttatgagcaaat---gtgcaatacaccatgtaatctgatgc 36055834  T
408 gacatgaattaaatacacaaatactcaatgattgatcatagagttaactttacca-aaaagttattctcataacttcaacatagaattttcct 499  Q
    |||||||||||||| ||||||| |||||||||||| |||    ||||||| || | |||||| |||||||| || ||| |||| |||||||||    
36055835 gacatgaattaaattcacaaatgctcaatgattgaccat----ttaacttcacaagaaaagtcattctcatgacatcaccataaaattttcct 36055923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 88; E-Value: 5e-42
Query Start/End: Original strand, 308 - 501
Target Start/End: Complemental strand, 22616677 - 22616491
Alignment:
308 gtttaattttgatttaatcagggacacaattgcaataagtaaagatataatgacacaccttatgagcaaatgtcgtgtaatacaccatacaatctgacgc 407  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    ||||||||||| ||| |||||     
22616677 gtttaattttgatttaatcagggacacaattgcaataagtaaagatataatgacacaccttatgggcaaatgtc---caatacaccatataatatgacgt 22616581  T
408 gacatgaattaaatacacaaatactcaatgattgatcatagagttaactttacca-aaaagttattctcataacttcaacatagaattttccttt 501  Q
    |||||| ||||||||||  ||| |||||||||||  |||    ||||||| |||| |||||| ||| |||| |||||| ||||||||||||||||    
22616580 gacatggattaaataca-taatgctcaatgattggccat----ttaacttcaccagaaaagtcattttcatgacttcaccatagaattttccttt 22616491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 81; E-Value: 7e-38
Query Start/End: Original strand, 308 - 442
Target Start/End: Complemental strand, 31878567 - 31878436
Alignment:
308 gtttaattttgatttaatcagggacacaattgcaataagtaaagatataatgacacaccttatgagcaaatgtcgtgtaatacaccatacaatctgacgc 407  Q
    ||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||   |||||   ||| ||||||||||| |||||||||     
31878567 gtttaattttgatttaatcagggacacaattgtcataagtaaagatataatgacacaccttatagacaaat---gtgcaatacaccatataatctgacgt 31878471  T
408 gacatgaattaaatacacaaatactcaatgattga 442  Q
    |||||||||||||||||||||| || |||||||||    
31878470 gacatgaattaaatacacaaatgcttaatgattga 31878436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 308 - 440
Target Start/End: Original strand, 41417443 - 41417572
Alignment:
308 gtttaattttgatttaatcagggacacaattgcaataagtaaagatataatgacacaccttatgagcaaatgtcgtgtaatacaccatacaatctgacgc 407  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||    || ||||||||||| ||||||||      
41417443 gtttaattttgatttaatctgggacacaattgcaataagtaaagataaaatgacacaccttatgagcaaat---ttgcaatacaccatataatctgacat 41417539  T
408 gacatgaattaaatacacaaatactcaatgatt 440  Q
    || || ||||||||||||||||  |||||||||    
41417540 gatataaattaaatacacaaatgttcaatgatt 41417572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 308 - 501
Target Start/End: Original strand, 12081131 - 12081324
Alignment:
308 gtttaattttgatttaatcagggacacaattgcaataagtaaagatataatgacacaccttatgagcaaatgtcgtgtaatacaccatacaatc-tgacg 406  Q
    |||||||||||||||||||||||||  ||||||||||||||||||||||| |||||||||||| |||||||   ||||||||||||||| |||| ||| |    
12081131 gtttaattttgatttaatcagggacttaattgcaataagtaaagatataaggacacaccttataagcaaat---gtgtaatacaccatataatcttgatg 12081227  T
407 cgacatgaattaaatacacaaatactcaatgattgatcatagagttaactt---taccaaaaagttattctcataacttcaacatagaattttccttt 501  Q
    || |||| |||| |||||| |||   |||||||||||||||| ||||||||    |  ||||||| ||||||||||||||| |||| |||||| ||||    
12081228 cgtcatggattatatacac-aatgtccaatgattgatcatagggttaacttagcaaaaaaaaagtcattctcataacttcaccatataatttttcttt 12081324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 309 - 427
Target Start/End: Complemental strand, 10053406 - 10053291
Alignment:
309 tttaattttgatttaatcagggacacaattgcaataagtaaagatataatgacacaccttatgagcaaatgtcgtgtaatacaccatacaatctgacgcg 408  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||   ||| ||||||| ||| |||| ||||      
10053406 tttaattttgatttaatcagggactcaattgcaataagtaaagatataatgacacaccttatgagcaaat---gtgcaatacacgatataatccgacgta 10053310  T
409 acatgaattaaatacacaa 427  Q
    ||||| |||||||||||||    
10053309 acatggattaaatacacaa 10053291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 313 - 442
Target Start/End: Complemental strand, 10237593 - 10237467
Alignment:
313 attttgatttaatcagggacacaattgcaataagtaaagatataatgacacaccttatgagcaaatgtcgtgtaatacaccatacaatctgacgcgacat 412  Q
    |||||||||||||| |||||||||||| |||||||||| ||||||||| | ||||||||  ||||||    | ||||||||||| ||||||||| || ||    
10237593 attttgatttaatctgggacacaattggaataagtaaatatataatgaaataccttatggacaaatgc---gcaatacaccatataatctgacgtgaaat 10237497  T
413 gaattaaatacacaaatactcaatgattga 442  Q
    ||||||||||||||||| ||||||||||||    
10237496 gaattaaatacacaaatgctcaatgattga 10237467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 308 - 446
Target Start/End: Complemental strand, 21320935 - 21320800
Alignment:
308 gtttaattttgatttaatcagggacacaattgcaataagtaaagatataatgacacaccttatgagcaaatgtcgtgtaatacaccatacaatctgacgc 407  Q
    ||||||||||||||||||||| |||||||||| |||||||||||||||||||| ||| |||||  ||||||    || ||||||||||| ||||||| |     
21320935 gtttaattttgatttaatcagagacacaattgtaataagtaaagatataatgatacatcttatatgcaaat---atgcaatacaccatataatctgatgt 21320839  T
408 gacatgaattaaatacacaaatactcaatgattgatcat 446  Q
    | ||| | |||||||||| ||| ||||||||||||||||    
21320838 ggcattagttaaatacacgaatgctcaatgattgatcat 21320800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 308 - 371
Target Start/End: Complemental strand, 33163699 - 33163636
Alignment:
308 gtttaattttgatttaatcagggacacaattgcaataagtaaagatataatgacacaccttatg 371  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
33163699 gtttaattttgatttaatcagggacacaattgcaataagtaaagatataatggcacaccttatg 33163636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 308 - 380
Target Start/End: Complemental strand, 21266203 - 21266131
Alignment:
308 gtttaattttgatttaatcagggacacaattgcaataagtaaagatataatgacacaccttatgagcaaatgt 380  Q
    |||||| |||||||||||||| ||| ||||||||||||||||||||||||||| |||||||||||||||||||    
21266203 gtttaaatttgatttaatcagagactcaattgcaataagtaaagatataatgatacaccttatgagcaaatgt 21266131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 308 - 446
Target Start/End: Complemental strand, 26411481 - 26411346
Alignment:
308 gtttaattttgatttaatcagggacacaattgcaataagtaaagatataatgacacaccttatgagcaaatgtcgtgtaatacaccatacaatctgacgc 407  Q
    |||||||||||||||||| ||||| |||||||||||||||||| ||||| || || ||  |||||||||||||     ||||||||||| ||| |||||     
26411481 gtttaattttgatttaattagggatacaattgcaataagtaaatatatagtggcatactgtatgagcaaatgtac---aatacaccatataatttgacgt 26411385  T
408 gacatgaattaaatacacaaatactcaatgattgatcat 446  Q
    |||||| |||||||||| ||||| |||||||||| ||||    
26411384 gacatgtattaaatacataaatattcaatgattggtcat 26411346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 308 - 495
Target Start/End: Complemental strand, 13380683 - 13380498
Alignment:
308 gtttaattttgatttaatcagggacacaattgcaataagtaaagatataatgacacaccttatgagcaaatgtcgtgtaatacaccatacaatctgacgc 407  Q
    |||||||||||||||||||||||| ||||||||||||| |||||||||||||||| |  ||||| | ||||   ||| ||||||||||  | | |||||     
13380683 gtttaattttgatttaatcagggatacaattgcaataaataaagatataatgacatattttatgggtaaat---gtgcaatacaccatgtagtatgacgt 13380587  T
408 gacatgaattaaatacacaaatactcaatgattgatcatagagttaactttacca-aaaagttattctcataacttcaacatagaattt 495  Q
     | |   |||||||||||||||||||| | | ||||||||| |||||||| || | |||||| |||||||| |||||| |||| |||||    
13380586 tataaagattaaatacacaaatactcattaagtgatcatagggttaacttcactagaaaagtcattctcatgacttcaccataaaattt 13380498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 308 - 380
Target Start/End: Complemental strand, 13887425 - 13887353
Alignment:
308 gtttaattttgatttaatcagggacacaattgcaataagtaaagatataatgacacaccttatgagcaaatgt 380  Q
    |||||||||||||||||||| |||||||||||||||||||||| ||||||||  ||||| |||||||||||||    
13887425 gtttaattttgatttaatcaaggacacaattgcaataagtaaaaatataatggtacaccatatgagcaaatgt 13887353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 308 - 415
Target Start/End: Complemental strand, 27579212 - 27579108
Alignment:
308 gtttaattttgatttaatcagggacacaattgcaataagtaaagatataatgacacaccttatgagcaaatgtcgtgtaatacaccatacaatctgacgc 407  Q
    ||||| |||||||||||| || |||||||||||||||| ||||||||||||||| ||| ||||  ||||||    || ||||||||||| |||||||||     
27579212 gtttacttttgatttaattagagacacaattgcaataaataaagatataatgacgcactttataggcaaat---atgcaatacaccatataatctgacgt 27579116  T
408 gacatgaa 415  Q
    ||||||||    
27579115 gacatgaa 27579108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 308 - 429
Target Start/End: Original strand, 33752912 - 33753030
Alignment:
308 gtttaattttgatttaatcagggacacaattgcaataagtaaagatataatgacacaccttatgagcaaatgtcgtgtaatacaccatacaatctgacgc 407  Q
    |||||| ||| ||||||||||||||||||| |||||||||||||||| ||| ||||||||| ||  |||||   ||| |||| ||| || ||||||| |     
33752912 gtttaaattttatttaatcagggacacaatggcaataagtaaagatacaataacacaccttgtggacaaat---gtgcaataaaccctataatctgaagt 33753008  T
408 gacatgaattaaatacacaaat 429  Q
    |||||  |||||||||||||||    
33753009 gacattgattaaatacacaaat 33753030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 308 - 498
Target Start/End: Original strand, 33848551 - 33848739
Alignment:
308 gtttaattttgatttaatcagggacacaattgcaataagtaaagatataatgacacaccttatgagcaaatgtcgtgtaatacaccatacaatctgacgc 407  Q
    ||||||||||||||||||||| ||||||||  |||||| |||||||| ||| |||||| || ||  |||||   ||| |||| | | || ||||||| |     
33848551 gtttaattttgatttaatcagagacacaatgacaataaataaagatacaataacacacattgtggacaaat---gtgcaataaatcctataatctgaagt 33848647  T
408 gacatgaattaaatacacaaatactcaatgattgatcatagagttaactttacca-aaaagttattctcataacttcaacatagaattttcc 498  Q
    |||||  ||||||||||||||| || |||||||| | |||| ||||| || |||| |||| | |||||||| | ||||  ||||||||||||    
33848648 gacattgattaaatacacaaatgctaaatgattggttatagggttaatttcaccagaaaaatgattctcattatttcactatagaattttcc 33848739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 308 - 380
Target Start/End: Original strand, 8777277 - 8777349
Alignment:
308 gtttaattttgatttaatcagggacacaattgcaataagtaaagatataatgacacaccttatgagcaaatgt 380  Q
    |||||||||||||||||  | |||||||||||||||||||||| ||||| ||  ||||| |||||||||||||    
8777277 gtttaattttgatttaacgaaggacacaattgcaataagtaaaaatatagtggtacaccatatgagcaaatgt 8777349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 313 - 380
Target Start/End: Complemental strand, 25513954 - 25513887
Alignment:
313 attttgatttaatcagggacacaattgcaataagtaaagatataatgacacaccttatgagcaaatgt 380  Q
    ||||||||||||||| ||| |||||||||||||||||| ||||| ||  ||||| |||||||||||||    
25513954 attttgatttaatcaaggagacaattgcaataagtaaaaatatagtggtacaccatatgagcaaatgt 25513887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 308 - 346
Target Start/End: Original strand, 25521707 - 25521745
Alignment:
308 gtttaattttgatttaatcagggacacaattgcaataag 346  Q
    |||||||||||||||||||| ||||||||||||||||||    
25521707 gtttaattttgatttaatcaaggacacaattgcaataag 25521745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 445 - 504
Target Start/End: Original strand, 22974203 - 22974263
Alignment:
445 atagagttaactttaccaaaaagtt-attctcataacttcaacatagaattttccttttaa 504  Q
    |||| |||||||| ||||||||  | ||||||||||||||| |||||||||||||||||||    
22974203 atagtgttaacttcaccaaaaaaatcattctcataacttcaccatagaattttccttttaa 22974263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 503 - 556
Target Start/End: Complemental strand, 25652582 - 25652533
Alignment:
503 aagaaactaatagaatttgttatatataaacaaacatatgtgttacgaaggaac 556  Q
    ||||||||||||||||||||||||||||    ||||||||||||| ||||||||    
25652582 aagaaactaatagaatttgttatatata----aacatatgtgttaagaaggaac 25652533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 445 - 498
Target Start/End: Complemental strand, 15724544 - 15724490
Alignment:
445 atagagttaactttaccaaaaa-gttattctcataacttcaacatagaattttcc 498  Q
    |||| |||||||| |||||||| || ||||||||||||||| |||||||||||||    
15724544 atagtgttaacttcaccaaaaaagtcattctcataacttcaccatagaattttcc 15724490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 445 - 502
Target Start/End: Complemental strand, 19119913 - 19119855
Alignment:
445 atagagttaactttacca-aaaagttattctcataacttcaacatagaattttcctttt 502  Q
    |||| |||||||| |||| |||||| |||||||| |||||| |||||||||||||||||    
19119913 atagtgttaacttcaccacaaaagtcattctcatgacttcaccatagaattttcctttt 19119855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 445 - 501
Target Start/End: Original strand, 8742008 - 8742065
Alignment:
445 atagagttaactttacca-aaaagttattctcataacttcaacatagaattttccttt 501  Q
    |||| |||||||| |||| |||||| |||||||| |||||| ||||||||||||||||    
8742008 atagtgttaacttcaccagaaaagtcattctcatgacttcaccatagaattttccttt 8742065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 445 - 496
Target Start/End: Original strand, 25501047 - 25501099
Alignment:
445 atagagttaactttacca-aaaagttattctcataacttcaacatagaatttt 496  Q
    |||| ||||||||||||| |||||| |||||||| |||||| |||||||||||    
25501047 atagtgttaactttaccagaaaagtcattctcatgacttcaccatagaatttt 25501099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 103; Significance: 6e-51; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 103; E-Value: 6e-51
Query Start/End: Original strand, 308 - 503
Target Start/End: Original strand, 11084018 - 11084205
Alignment:
308 gtttaattttgatttaatcagggacacaattgcaataagtaaagatataatgacacaccttatgagcaaatgtcgtgtaatacaccatacaatctgacgc 407  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||   ||||||||||||||| ||  |||||     
11084018 gtttaattttgatttaatcagagacacaattgcaataagtaaagatataatgacacaccttatgggcaaat---gtgtaatacaccatataa--tgacgt 11084112  T
408 gacatgaattaaatacacaaatactcaatgattgatcatagagttaactttacca-aaaagttattctcataacttcaacatagaattttcctttta 503  Q
    |||||| |||||||||| ||||| |||||||||| ||||    |||||||||||| |||||||||| |||| |||||| ||||||||||||||||||    
11084113 gacatggattaaatacataaatattcaatgattggtcat----ttaactttaccagaaaagttattttcatgacttcaccatagaattttcctttta 11084205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 309 - 500
Target Start/End: Complemental strand, 19631932 - 19631747
Alignment:
309 tttaattttgatttaatcagggacacaattgcaataagtaaagatataatgacacaccttatgagcaaatgtcgtgtaatacaccatacaatctgacgcg 408  Q
    |||||||||||||||||||| ||||| ||||||||||||||||||||||||| |||||||||  ||||||   ||| ||||||||||| ||||| ||| |    
19631932 tttaattttgatttaatcagagacacgattgcaataagtaaagatataatgaaacaccttataggcaaat---gtgcaatacaccatataatctaacgtg 19631836  T
409 acatgaattaaatacacaaatactcaatgattgatcatagagttaactttacca-aaaagttattctcataacttcaacatagaattttcctt 500  Q
    ||||| |||||||||||||||  |||||||||| ||||    ||||||| |||| |||||| ||||| || |||||| |||||||||||||||    
19631835 acatggattaaatacacaaatgttcaatgattggtcat----ttaacttcaccagaaaagtcattcttatgacttcaccatagaattttcctt 19631747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 308 - 446
Target Start/End: Original strand, 26301789 - 26301922
Alignment:
308 gtttaattttgatttaatcagggacacaattgcaataagtaaagatataatgacacaccttatgagcaaatgtcgtgtaatacaccatacaatctgacgc 407  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||   ||||    || |||||| |||| ||  |||||     
26301789 gtttaattttgatttaatcagggacacaattgcaataagtaaagatataatgacacatcttatggataaat---atgcaatacatcatataa--tgacgt 26301883  T
408 gacatgaattaaatacacaaatactcaatgattgatcat 446  Q
    ||||||||||||||||| ||||| |||||||||| ||||    
26301884 gacatgaattaaatacataaatattcaatgattggtcat 26301922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 308 - 419
Target Start/End: Complemental strand, 34994015 - 34993907
Alignment:
308 gtttaattttgatttaatcagggacacaattgcaataagtaaagatataatgacacaccttatgagcaaatgtcgtgtaatacaccatacaatctgacgc 407  Q
    |||||||||||||||||||| ||||||||||| |||||||||||||||||| ||| || |||||  |||||   ||| ||||||||||| ||||||| |     
34994015 gtttaattttgatttaatcaaggacacaattgtaataagtaaagatataataacatacattatggacaaat---gtgcaatacaccatataatctgatgt 34993919  T
408 gacatgaattaa 419  Q
    ||||||||||||    
34993918 gacatgaattaa 34993907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 309 - 380
Target Start/End: Complemental strand, 30341207 - 30341136
Alignment:
309 tttaattttgatttaatcagggacacaattgcaataagtaaagatataatgacacaccttatgagcaaatgt 380  Q
    ||||||||||||||||||| | ||||||||||||||||| |||||||||||||||| |||||| ||||||||    
30341207 tttaattttgatttaatcatgaacacaattgcaataagtgaagatataatgacacaacttatgggcaaatgt 30341136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 308 - 380
Target Start/End: Original strand, 4488446 - 4488518
Alignment:
308 gtttaattttgatttaatcagggacacaattgcaataagtaaagatataatgacacaccttatgagcaaatgt 380  Q
    |||||||||||||||||||| | |||||||||||| ||||||| ||||| ||  ||||| |||||||||||||    
4488446 gtttaattttgatttaatcaagaacacaattgcaacaagtaaaaatatagtggtacaccatatgagcaaatgt 4488518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 308 - 380
Target Start/End: Complemental strand, 25441146 - 25441074
Alignment:
308 gtttaattttgatttaatcagggacacaattgcaataagtaaagatataatgacacaccttatgagcaaatgt 380  Q
    |||||||||| ||||||||| |||||||||||||||||||||| ||||| ||  ||||| ||| |||||||||    
25441146 gtttaattttaatttaatcaaggacacaattgcaataagtaaaaatatagtggtacaccatataagcaaatgt 25441074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 333 - 370
Target Start/End: Complemental strand, 4103070 - 4103033
Alignment:
333 acaattgcaataagtaaagatataatgacacaccttat 370  Q
    |||||||||||||||||| |||||||||||||||||||    
4103070 acaattgcaataagtaaaaatataatgacacaccttat 4103033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 445 - 502
Target Start/End: Original strand, 4318953 - 4319011
Alignment:
445 atagagttaactttaccaaaaa-gttattctcataacttcaacatagaattttcctttt 502  Q
    |||| |||||||| |||||||| || |||||||| |||||| |||||||||||||||||    
4318953 atagtgttaacttcaccaaaaaagtcattctcatgacttcaccatagaattttcctttt 4319011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 103; Significance: 6e-51; HSPs: 26)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 103; E-Value: 6e-51
Query Start/End: Original strand, 308 - 496
Target Start/End: Complemental strand, 41644056 - 41643874
Alignment:
308 gtttaattttgatttaatcagggacacaattgcaataagtaaagatataatgacacaccttatgagcaaatgtcgtgtaatacaccatacaatctgacgc 407  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||   ||| ||||||||||| |||||||||     
41644056 gtttaattttgatttaatcagggatacaattgcaataagtaaagatataatgacacaccttatgatcaaat---gtgcaatacaccatataatctgacgt 41643960  T
408 gacatgaattaaatacacaaatactcaatgattgatcatagagttaactttacc-aaaaagttattctcataacttcaacatagaatttt 496  Q
    |||||||||||||||||||||| |||||||||||| |||    ||||||| ||| ||||||| ||| |||| |||||| |||||||||||    
41643959 gacatgaattaaatacacaaatgctcaatgattgaccat----ttaacttcaccaaaaaagtcattatcatgacttcaccatagaatttt 41643874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 308 - 500
Target Start/End: Original strand, 34441787 - 34441971
Alignment:
308 gtttaattttgatttaatcagggacacaattgcaataagtaaagatataatgacacaccttatgagcaaatgtcgtgtaatacaccatacaatctgacgc 407  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||| ||||||   ||| ||||||||||| ||  |||||     
34441787 gtttaattttgatttaatcagggacacaattgcaataagtaaagatataacgacacatcttatgggcaaat---gtgcaatacaccatataa--tgacgt 34441881  T
408 gacatgaattaaatacacaaatactcaatgattgatcatagagttaactttacc-aaaaagttattctcataacttcaacatagaattttcctt 500  Q
    ||||||||||||||||||||||| ||||| |||| ||||    ||||||||||| ||||||| ||| |||| |||||| |||||||||||||||    
34441882 gacatgaattaaatacacaaatattcaataattggtcat----ttaactttaccaaaaaagtcattttcatgacttcaccatagaattttcctt 34441971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 88; E-Value: 5e-42
Query Start/End: Original strand, 308 - 499
Target Start/End: Complemental strand, 19073542 - 19073356
Alignment:
308 gtttaattttgatttaatcagggacacaattgcaataagtaaagatataatgacacaccttatgagcaaatgtcgtgtaatacaccatacaatctgacgc 407  Q
    |||||| |||||||||||||||||||||||| ||||||||||| |||||||||||||||||||   |||||   ||| ||||||||||| |||||||||     
19073542 gtttaactttgatttaatcagggacacaatttcaataagtaaatatataatgacacaccttatagacaaat---gtggaatacaccatataatctgacgt 19073446  T
408 gacatgaattaaatacacaaatactcaatgattgatcatagagttaactttacc--aaaaagttattctcataacttcaacatagaattttcct 499  Q
    |||||| ||||||||||||||| |||||||||||| |||    ||||||| |||  ||||| | ||||||||||||||| ||||||||||||||    
19073445 gacatggattaaatacacaaattctcaatgattgaccat----ttaacttcaccaaaaaaaatcattctcataacttcaccatagaattttcct 19073356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 86; E-Value: 8e-41
Query Start/End: Original strand, 313 - 500
Target Start/End: Complemental strand, 6177954 - 6177773
Alignment:
313 attttgatttaatcagggacacaattgcaataagtaaagatataatgacacaccttatgagcaaatgtcgtgtaatacaccatacaatctgacgcgacat 412  Q
    ||||||||||||||||||||||||||| |||||||||| ||||||||||| |||||||| |||||||    | ||||||||||| ||||||||| |||||    
6177954 attttgatttaatcagggacacaattggaataagtaaatatataatgacataccttatgggcaaatgc---gcaatacaccatataatctgacgtgacat 6177858  T
413 gaattaaatacacaaatactcaatgattgatcatagagttaactttacca-aaaagttattctcataacttcaacatagaattttcctt 500  Q
    ||||||||||||||||| |||||||||||| |||    ||||||| |||| |||||| |||||||| |||||  | |||||||||||||    
6177857 gaattaaatacacaaatgctcaatgattgaccat----ttaacttcaccagaaaagtcattctcatgacttcgccgtagaattttcctt 6177773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 81; E-Value: 7e-38
Query Start/End: Original strand, 308 - 442
Target Start/End: Complemental strand, 15651032 - 15650901
Alignment:
308 gtttaattttgatttaatcagggacacaattgcaataagtaaagatataatgacacaccttatgagcaaatgtcgtgtaatacaccatacaatctgacgc 407  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||   ||| ||||||||||| ||||| |||     
15651032 gtttaattttgatttaatcaggaacacaattgcaataagtaaagatataatgacacaccttatgggcaaat---gtgaaatacaccatataatcttacgt 15650936  T
408 gacatgaattaaatacacaaatactcaatgattga 442  Q
    || ||| |||||||||||||||| | |||||||||    
15650935 gatatggattaaatacacaaatatttaatgattga 15650901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 308 - 442
Target Start/End: Original strand, 18779263 - 18779396
Alignment:
308 gtttaattttgatttaatcagggacacaattgcaataagtaaagatataatgacacaccttatga--gcaaatgtcgtgtaatacaccatacaatctgac 405  Q
    |||||| ||||||||||||||| |||||||||||||||||||||||| ||| |||||| |||| |  ||||||   ||| |||| |||||| |||||||     
18779263 gtttaactttgatttaatcaggaacacaattgcaataagtaaagataaaataacacactttattatggcaaat---gtgcaataaaccatataatctgat 18779359  T
406 gcgacatgaattaaatacacaaatactcaatgattga 442  Q
    | |||||||||||||||||||||| ||||||||||||    
18779360 gtgacatgaattaaatacacaaatgctcaatgattga 18779396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 308 - 492
Target Start/End: Complemental strand, 30845031 - 30844850
Alignment:
308 gtttaattttgatttaatcagggacacaattgcaataagtaaagatataatgacacaccttatgagcaaatgtcgtgtaatacaccatacaatctgacgc 407  Q
    |||||||||||||||||| || ||| ||| |||||||||||||||| |||||||||| ||||||  |||||   ||| |||| | |||| |||||||||     
30845031 gtttaattttgatttaattagagactcaaatgcaataagtaaagatttaatgacacatcttatggacaaat---gtgcaatatatcatataatctgacgt 30844935  T
408 gacatgaattaaatacacaaatactcaatgattgatcatagagttaactttacc-aaaaagttattctcataacttcaacatagaa 492  Q
    |||||| ||||||||||  ||| |||||||||||||||| |  ||||||| |||  |||||| ||||||||||||||| |||||||    
30844934 gacatggattaaataca-gaatgctcaatgattgatcatgggattaacttcaccttaaaagtcattctcataacttcaccatagaa 30844850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 308 - 497
Target Start/End: Complemental strand, 42005571 - 42005390
Alignment:
308 gtttaattttgatttaatcaggg-acacaattgcaataagtaaagatataatgacacaccttatgagcaaatgtcgtgtaatacaccatacaatctgacg 406  Q
    ||||||||||||||||||||||| |||||||| |||||||||||||| ||||||||||||||||| ||||     ||| ||||||||||| ||  |||||    
42005571 gtttaattttgatttaatcaggggacacaattacaataagtaaagatgtaatgacacaccttatgggcaa----tgtgcaatacaccatataa--tgacg 42005478  T
407 cgacatgaattaaatacacaaatactcaatgattgatcatagagttaactttacc-aaaaagttattctcataacttcaacatagaattttc 497  Q
     |||||| |||||||| ||||||| |||||| ||||||||    ||||||| ||| ||||| | ||| |||| |||||| ||||||||||||    
42005477 tgacatggattaaataaacaaatattcaatggttgatcat----ttaacttcaccaaaaaaatcattttcatgacttcaccatagaattttc 42005390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 308 - 446
Target Start/End: Complemental strand, 41713346 - 41713213
Alignment:
308 gtttaattttgatttaatcagggacacaattgcaataagtaaagatataatgacacaccttatgagcaaatgtcgtgtaatacaccatacaatctgacgc 407  Q
    |||||||||||||||||| ||||| ||||||| |||||||| | ||||||||||||| |||||| ||||||   |||||| |||||||| ||  |||||     
41713346 gtttaattttgatttaattagggaaacaattgtaataagtatacatataatgacacatcttatgggcaaat---gtgtaacacaccatataa--tgacgt 41713252  T
408 gacatgaattaaatacacaaatactcaatgattgatcat 446  Q
    ||||||||||||||||| ||||| |||||||||| ||||    
41713251 gacatgaattaaatacataaatattcaatgattggtcat 41713213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 309 - 442
Target Start/End: Original strand, 18059227 - 18059357
Alignment:
309 tttaattttgatttaatcagggacacaattgcaataagtaaagatataatgacacaccttatgagcaaatgtcgtgtaatacaccatacaatctgacgcg 408  Q
    ||||||||| || |||||| |||||||||||||||||||||||||||||| |||||| |||||   ||||    || ||||||||||| ||||||||  |    
18059227 tttaattttaatctaatcaaggacacaattgcaataagtaaagatataataacacacattatggataaat---atgcaatacaccatataatctgacatg 18059323  T
409 acatgaattaaatacacaaatactcaatgattga 442  Q
    |||||||||||||||||||||| ||||| |||||    
18059324 acatgaattaaatacacaaatattcaataattga 18059357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 308 - 441
Target Start/End: Original strand, 27138885 - 27139014
Alignment:
308 gtttaattttgatttaatcagggacacaattgcaataagtaaagatataatgacacaccttatgagcaaatgtcgtgtaatacaccatacaatctgacgc 407  Q
    |||||||||||||||||||||||||||||||||||   |||||||||||||||||||| ||||| ||||||    || |||||||| || |||||||||     
27138885 gtttaattttgatttaatcagggacacaattgcaacccgtaaagatataatgacacactttatgggcaaat---atgcaatacaccgtataatctgacgt 27138981  T
408 gacatgaattaaatacacaaatactcaatgattg 441  Q
    |||||| ||| |||||||||||  ||||||||||    
27138982 gacatggatt-aatacacaaatgatcaatgattg 27139014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 308 - 499
Target Start/End: Original strand, 43446322 - 43446511
Alignment:
308 gtttaattttgatttaatcagggacacaattgcaataagtaaagatataatgacacaccttatgagcaaatgtcgtgtaatacaccatacaatctgacgc 407  Q
    |||||||||| |||| || | ||||||||||| |||||||||||||||| ||||| ||| ||||||||||   |||| || |||||||| ||| |||||     
43446322 gtttaattttaattttattaaggacacaattgtaataagtaaagatatagtgacataccctatgagcaaa---cgtgcaacacaccatataatttgacgt 43446418  T
408 gacatgaattaaatacacaaatactcaatgattgatcatagagttaactttacc-aaaaagttattctcataacttcaacatagaattttcct 499  Q
    |  ||| |||| |||| |||||  |||||||||||||||     |||||| ||| ||||||| |||||||| |||||| ||||||||||||||    
43446419 ggtatgcattagatacgcaaatgttcaatgattgatcattctcataacttcaccgaaaaagtcattctcatgacttcaccatagaattttcct 43446511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 310 - 362
Target Start/End: Original strand, 38250000 - 38250052
Alignment:
310 ttaattttgatttaatcagggacacaattgcaataagtaaagatataatgaca 362  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||    
38250000 ttaattttgatttaatcagggacacaattgcaataagtaaagatataatgaca 38250052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 348 - 498
Target Start/End: Complemental strand, 22963548 - 22963400
Alignment:
348 aaagatataatgacacaccttatgagcaaatgtcgtgtaatacaccatacaatctgacgcgacatgaattaaatacacaaatactcaatgattgatcata 447  Q
    |||||||||||||||||||||| || ||||| |   ||| ||||||||| |||||||||   |||  ||||||||||||||  || |||||||| |||||    
22963548 aaagatataatgacacaccttaagaacaaatat---gtagtacaccatataatctgacgttgcattgattaaatacacaaaagctaaatgattggtcata 22963452  T
448 gagttaactttacca-aaaagttattctcataacttcaacatagaattttcc 498  Q
    |  |||||||||||| |||||| ||||| || |||||| |||| ||||||||    
22963451 ggattaactttaccagaaaagtcattcttatgacttcaccataaaattttcc 22963400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 386 - 494
Target Start/End: Original strand, 18947537 - 18947642
Alignment:
386 aatacaccatacaatctgacgcgacatgaattaaatacacaaatactcaatgattgatcatagagttaactttacca-aaaagttattctcataacttca 484  Q
    ||||||||||| ||||||||| |||||| |||||||||||||||  ||||||||||| |||    ||||||| |||| |||||||||| |||| ||||||    
18947537 aatacaccatataatctgacgtgacatggattaaatacacaaatgttcaatgattgaccat----ttaacttcaccagaaaagttattttcatgacttca 18947632  T
485 acatagaatt 494  Q
     |||||||||    
18947633 ccatagaatt 18947642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 308 - 380
Target Start/End: Complemental strand, 32652021 - 32651949
Alignment:
308 gtttaattttgatttaatcagggacacaattgcaataagtaaagatataatgacacaccttatgagcaaatgt 380  Q
    |||||||||||||||||||| |||||||||||||| ||||||| ||||| ||  ||||| |||||||||||||    
32652021 gtttaattttgatttaatcaaggacacaattgcaacaagtaaaaatatagtggtacaccatatgagcaaatgt 32651949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 309 - 380
Target Start/End: Original strand, 40913164 - 40913235
Alignment:
309 tttaattttgatttaatcagggacacaattgcaataagtaaagatataatgacacaccttatgagcaaatgt 380  Q
    ||||||||||||||||||| ||||||||||||||||| |||| ||||| ||  ||||| |||||||||||||    
40913164 tttaattttgatttaatcaaggacacaattgcaataaataaaaatatagtggtacaccatatgagcaaatgt 40913235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 348 - 498
Target Start/End: Original strand, 22997929 - 22998077
Alignment:
348 aaagatataatgacacaccttatgagcaaatgtcgtgtaatacaccatacaatctgacgcgacatgaattaaatacacaaatactcaatgattgatcata 447  Q
    |||||||||| ||||||||||| || ||||| |   ||| ||||||||| |||||||||   |||  ||||||||||||||  || |||||||| |||||    
22997929 aaagatataacgacacaccttaagaacaaatat---gtagtacaccatataatctgacgttgcattgattaaatacacaaaagctaaatgattggtcata 22998025  T
448 gagttaactttacca-aaaagttattctcataacttcaacatagaattttcc 498  Q
    |  |||||||||||| |||||| ||||| || |||||| |||| ||||||||    
22998026 ggattaactttaccagaaaagtcattcttatgacttcaccataaaattttcc 22998077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 308 - 372
Target Start/End: Complemental strand, 7553538 - 7553474
Alignment:
308 gtttaattttgatttaatcagggacacaattgcaataagtaaagatataatgacacaccttatga 372  Q
    ||||||||||||||||||||  ||||||||||||||||||||| ||||| ||| ||||| |||||    
7553538 gtttaattttgatttaatcaatgacacaattgcaataagtaaaaatatagtgatacaccatatga 7553474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 313 - 424
Target Start/End: Complemental strand, 58204 - 58097
Alignment:
313 attttgatttaatcagggacacaattgcaataagtaaagatataatgacacaccttatgagcaaatgtcgtgtaatacaccatacaatctgacgcgacat 412  Q
    ||||| ||||||||||| |||||||||||||||||||| ||||  || |||||| ||||| |||||   ||| ||||||||||| ||| |||   |||||    
58204 attttaatttaatcagg-acacaattgcaataagtaaaaatattgtggcacaccgtatgaacaaat---gtgcaatacaccatataatttgatctgacat 58109  T
413 gaattaaataca 424  Q
    ||||||||||||    
58108 gaattaaataca 58097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 463 - 500
Target Start/End: Original strand, 31570902 - 31570939
Alignment:
463 aaaagttattctcataacttcaacatagaattttcctt 500  Q
    |||||||||||||||||||||| |||||||||||||||    
31570902 aaaagttattctcataacttcaccatagaattttcctt 31570939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 312 - 380
Target Start/End: Complemental strand, 6348900 - 6348832
Alignment:
312 aattttgatttaatcagggacacaattgcaataagtaaagatataatgacacaccttatgagcaaatgt 380  Q
    |||||||||||||| | |||| |||||||||||||||||  |||||||  ||||| ||||| |||||||    
6348900 aattttgatttaattaaggacccaattgcaataagtaaaactataatggtacaccatatgaacaaatgt 6348832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 308 - 364
Target Start/End: Original strand, 39788474 - 39788530
Alignment:
308 gtttaattttgatttaatcagggacacaattgcaataagtaaagatataatgacaca 364  Q
    ||||||||||||||||| ||| |||| ||||||| |||||||  |||||||||||||    
39788474 gtttaattttgatttaaccagagacataattgcagtaagtaacaatataatgacaca 39788530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 463 - 503
Target Start/End: Original strand, 2325538 - 2325578
Alignment:
463 aaaagttattctcataacttcaacatagaattttcctttta 503  Q
    |||||| |||| |||||||||| ||||||||||||||||||    
2325538 aaaagtcattcacataacttcaccatagaattttcctttta 2325578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 308 - 340
Target Start/End: Original strand, 18947474 - 18947506
Alignment:
308 gtttaattttgatttaatcagggacacaattgc 340  Q
    ||||| |||||||||||||||||||||||||||    
18947474 gtttacttttgatttaatcagggacacaattgc 18947506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 462 - 498
Target Start/End: Complemental strand, 31861931 - 31861895
Alignment:
462 aaaaagttattctcataacttcaacatagaattttcc 498  Q
    ||||||| ||||||||||||||| |||||||||||||    
31861931 aaaaagtcattctcataacttcaccatagaattttcc 31861895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 89; Significance: 1e-42; HSPs: 12)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 308 - 501
Target Start/End: Original strand, 4108778 - 4108963
Alignment:
308 gtttaattttgatttaatcagggacacaattgcaataagtaaagatataatgacacaccttatgagcaaatgtcgtgtaatacaccatacaatctgacgc 407  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||   ||| ||||||||||| ||  |||||     
4108778 gtttaattttgatttaatcagggacacaattgcaataagtaaagatataacgacacaccttatgggcaaat---gtgcaatacaccatataa--tgacgt 4108872  T
408 gacatgaattaaatacacaaatactcaatgattgatcatagagttaactttacc-aaaaagttattctcataacttcaacatagaattttccttt 501  Q
    | ||| ||||||||||||||||| |||||||||| ||||    ||||||||||| ||||||| ||| |||| |||||| |||| |||||||||||    
4108873 ggcattaattaaatacacaaatattcaatgattggtcat----ttaactttaccaaaaaagtcattttcatgacttcaccataaaattttccttt 4108963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 308 - 439
Target Start/End: Complemental strand, 3038590 - 3038462
Alignment:
308 gtttaattttgatttaatcagggacacaattgcaataagtaaagatataatgacacaccttatgagcaaatgtcgtgtaatacaccatacaatctgacgc 407  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  || ||   ||| |||||||  || |||||||||     
3038590 gtttaattttgatttaatcagggacacaattgcaataagtaaagatataatgacacaccttatggacagat---gtgcaatacactgtataatctgacgt 3038494  T
408 gacatgaattaaatacacaaatactcaatgat 439  Q
    ||||| ||||||||| |||||| |||||||||    
3038493 gacataaattaaatagacaaatgctcaatgat 3038462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 311 - 440
Target Start/End: Complemental strand, 7290900 - 7290774
Alignment:
311 taattttgatttaatcagggacacaattgcaataagtaaagatataatgacacaccttatgagcaaatgtcgtgtaatacaccatacaatctgacgcgac 410  Q
    ||||||||||||||||||| | |||||||||||||||||||||||||| | ||| |||||| | |||||||   |||||| ||||| ||||||||| |||    
7290900 taattttgatttaatcaggaatacaattgcaataagtaaagatataataatacatcttatgggaaaatgtc---taatacgccatataatctgacgtgac 7290804  T
411 atgaattaaatacacaaatactcaatgatt 440  Q
    ||||||||||  |||||||  |||||||||    
7290803 atgaattaaacgcacaaatgatcaatgatt 7290774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 308 - 496
Target Start/End: Original strand, 35735845 - 35736030
Alignment:
308 gtttaattttgatttaatcagggacacaattgcaataagtaaagatataatgacacaccttatgagcaaatgtcgtgtaatacaccatacaatctgacgc 407  Q
    |||||||||| ||||||||||| ||||||||| |||| ||||||||||| || ||||||||||||||||||   ||| ||||||||||| ||| | |||     
35735845 gtttaatttttatttaatcagg-acacaattgtaataggtaaagatatagtggcacaccttatgagcaaat---gtgcaatacaccatataatttaacgg 35735940  T
408 gacatgaattaaatacacaaatactcaatgattgatcatagagttaactttacc-aaaaagttattctcataacttcaacatagaatttt 496  Q
    ||||   ||||||||||||||| ||||||||||  || ||   ||||||| ||| ||||||| ||||| || |||||| |||||||||||    
35735941 gacacacattaaatacacaaatgctcaatgattcgtcgtatgattaacttcaccaaaaaagtcattctaatgacttcaccatagaatttt 35736030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 308 - 433
Target Start/End: Original strand, 6267369 - 6267491
Alignment:
308 gtttaattttgatttaatcagggacacaattgcaataagtaaagatataatgacacaccttatgagcaaatgtcgtgtaatacaccatacaatctgacgc 407  Q
    |||||||||||||||||||| ||||| |||||||||||||||||||||||| |||||||||||    ||||   || |||||||||| | || ||||||     
6267369 gtttaattttgatttaatcaaggacataattgcaataagtaaagatataataacacaccttatagataaat---gtataatacaccaaataacctgacgt 6267465  T
408 gacatgaattaaatacacaaatactc 433  Q
    | ||||| ||||||||||||||||||    
6267466 ggcatgacttaaatacacaaatactc 6267491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 314 - 370
Target Start/End: Original strand, 18756537 - 18756593
Alignment:
314 ttttgatttaatcagggacacaattgcaataagtaaagatataatgacacaccttat 370  Q
    |||| ||| ||||| |||||||||||||||||||||||||||||||||||| |||||    
18756537 ttttaattgaatcatggacacaattgcaataagtaaagatataatgacacatcttat 18756593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 308 - 348
Target Start/End: Original strand, 23176650 - 23176690
Alignment:
308 gtttaattttgatttaatcagggacacaattgcaataagta 348  Q
    |||||||||||||||||||||||||||||||||||||||||    
23176650 gtttaattttgatttaatcagggacacaattgcaataagta 23176690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 308 - 356
Target Start/End: Original strand, 1879090 - 1879138
Alignment:
308 gtttaattttgatttaatcagggacacaattgcaataagtaaagatata 356  Q
    |||||||||||||||||||| ||||||| |||||||||||||| |||||    
1879090 gtttaattttgatttaatcaaggacacatttgcaataagtaaaaatata 1879138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 319 - 370
Target Start/End: Original strand, 30380989 - 30381040
Alignment:
319 atttaatcagggacacaattgcaataagtaaagatataatgacacaccttat 370  Q
    |||||||||||| |||||||  |||||||||||||||||||||||| |||||    
30380989 atttaatcaggggcacaattataataagtaaagatataatgacacatcttat 30381040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 308 - 356
Target Start/End: Original strand, 1835249 - 1835297
Alignment:
308 gtttaattttgatttaatcagggacacaattgcaataagtaaagatata 356  Q
    |||||||||||||||||||| ||||||| |||| ||||||||| |||||    
1835249 gtttaattttgatttaatcaaggacacatttgcgataagtaaaaatata 1835297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 333 - 371
Target Start/End: Complemental strand, 34463575 - 34463537
Alignment:
333 acaattgcaataagtaaagatataatgacacaccttatg 371  Q
    |||||| ||||||||||||||||||||||||||| ||||    
34463575 acaattacaataagtaaagatataatgacacaccatatg 34463537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 445 - 500
Target Start/End: Original strand, 43643732 - 43643788
Alignment:
445 atagagttaactttaccaaaa-agttattctcataacttcaacatagaattttcctt 500  Q
    |||| |||||||| ||||||| ||| |||||||| |||||| |||||||||||||||    
43643732 atagtgttaacttcaccaaaatagtcattctcatgacttcaccatagaattttcctt 43643788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 88; Significance: 5e-42; HSPs: 22)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 88; E-Value: 5e-42
Query Start/End: Original strand, 308 - 440
Target Start/End: Complemental strand, 1012481 - 1012351
Alignment:
308 gtttaattttgatttaatcagggacacaa-ttgcaataagtaaagatataatgacacaccttatgagcaaatgtcgtgtaatacaccatacaatctgacg 406  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||   ||| ||||||||||| |||||||||    
1012481 gtttaattttgatttaatcagggacacaaattgcaataagtaaagatataatgacacaccttatgggcaaat---gtgcaatacaccatataatctgacg 1012385  T
407 cgacatgaattaaatacacaaatactcaatgatt 440  Q
     |||||| ||||||||||||||||||| ||||||    
1012384 tgacatggattaaatacacaaatactcgatgatt 1012351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 308 - 455
Target Start/End: Original strand, 33036066 - 33036209
Alignment:
308 gtttaattttgatttaatcagggacacaattgcaataagtaaagatataatgacacaccttatgagcaaatgtcgtgtaatacaccatacaatctgacgc 407  Q
    ||||||||||||||||||||| ||| ||||||||||||||||||||||||||||| |||||||  ||||||   ||| ||||||| ||| ||||| |||     
33036066 gtttaattttgatttaatcagagactcaattgcaataagtaaagatataatgacaaaccttataggcaaat---gtgcaatacacaatataatctaacgt 33036162  T
408 gacatgaattaaatacacaaatactcaatgattgatcatagagttaac 455  Q
     ||||| ||||||||||  ||| ||||||||||||||||| |||||||    
33036163 aacatggattaaataca-gaatgctcaatgattgatcataaagttaac 33036209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 309 - 500
Target Start/End: Original strand, 54995664 - 54995849
Alignment:
309 tttaattttgatttaatcagggacacaattgcaataagtaaagatataatgacacaccttatgagcaaatgtcgtgtaatacaccatacaatctgacgcg 408  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||  |||||   ||| |||||| |||| || |||||  |    
54995664 tttaattttgatttaatcagggacacaattgcaataagtaaagatataaagacacacattatggacaaat---gtgcaatacatcatataacctgacatg 54995760  T
409 acatgaattaaatacacaaatactcaatgattgatcatagagttaactttacc-aaaaagttattctcataacttcaacatagaattttcctt 500  Q
    ||||| ||||||||| |||||   |||||||||  |||    ||||||| ||| ||||||| ||| |||| |||||| | |||||||||||||    
54995761 acatggattaaatacgcaaatgtacaatgattggccat----ttaacttcaccaaaaaagtcattatcatgacttcatcgtagaattttcctt 54995849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 308 - 442
Target Start/End: Original strand, 2266720 - 2266851
Alignment:
308 gtttaattttgatttaatcagggacacaattgcaataagtaaagatataatgacacaccttatgagcaaatgtcgtgtaatacaccatacaatctgacgc 407  Q
    ||||||||||||||||||||  | || | ||||||||||||||||||||||||||||||||||   |||||   ||||||||||||||  ||||| |||     
2266720 gtttaattttgatttaatcaaagtcatagttgcaataagtaaagatataatgacacaccttatagacaaat---gtgtaatacaccatgtaatctaacgt 2266816  T
408 gacatgaattaaatacacaaatactcaatgattga 442  Q
    | |||| ||||||||||||||| ||||||||||||    
2266817 ggcatggattaaatacacaaatgctcaatgattga 2266851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 348 - 497
Target Start/End: Complemental strand, 51204727 - 51204580
Alignment:
348 aaagatataatgacacaccttatgagcaaatgtcgtgtaatacaccatacaatctgacgcgacatgaattaaatacacaaatactcaatgattgatcata 447  Q
    ||||||||||||||||||||||| |||||||||   | ||| ||||||| ||||||| | |||||| ||||||||||||||  |||||| ||||||||||    
51204727 aaagatataatgacacaccttattagcaaatgt---gcaatgcaccatataatctgatgtgacatggattaaatacacaaaagctcaataattgatcata 51204631  T
448 gagttaactttacca-aaaagttattctcataacttcaacatagaattttc 497  Q
    | |||||||| |||| |||||| ||| | || |||||| ||||||||||||    
51204630 gggttaacttcaccagaaaagtcatttttatgacttcaccatagaattttc 51204580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 308 - 373
Target Start/End: Complemental strand, 2708057 - 2707992
Alignment:
308 gtttaattttgatttaatcagggacacaattgcaataagtaaagatataatgacacaccttatgag 373  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||    
2708057 gtttaattttgatttaatcagggactcaattgcaataagtaaagatataatgacacacctgatgag 2707992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 82 - 171
Target Start/End: Original strand, 28292926 - 28293014
Alignment:
82 aagatgataagattttggagtgaaagggagtgaaataatgacaaaataagatgataaaattttggagttaaaggaactaatgaagatgaa 171  Q
    ||||||||||||||||||||||||||| | ||||||||||||||||||||||||||| |||||||||| |||| || | |||||||||||    
28292926 aagatgataagattttggagtgaaaggaa-tgaaataatgacaaaataagatgataagattttggagtgaaagaaattgatgaagatgaa 28293014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 386 - 496
Target Start/End: Original strand, 20097426 - 20097537
Alignment:
386 aatacaccatacaatctgacgcgacatgaattaaatacacaaatactcaatgattgatcatagagttaactttacca-aaaagttattctcataacttca 484  Q
    ||||||| ||| ||||||||| | |||||||||||||||||||| |  ||||||||||||||| |||||||| |||| |||||| |||||||| ||||||    
20097426 aatacactatataatctgacgtggcatgaattaaatacacaaatgcggaatgattgatcatagggttaacttcaccagaaaagtcattctcatgacttca 20097525  T
485 acatagaatttt 496  Q
     |||||||||||    
20097526 ccatagaatttt 20097537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 308 - 442
Target Start/End: Complemental strand, 17612518 - 17612388
Alignment:
308 gtttaattttgatttaatcagggacacaattgcaataagtaaagatataatgacacaccttatgagcaaatgtcgtgtaatacaccatacaatctgacgc 407  Q
    |||||||||||||||||||  ||||| |||||||||||||||||||  |||||||||||||||  ||||||   ||| |||||| |||  |||||| ||     
17612518 gtttaattttgatttaatctaggacataattgcaataagtaaagatgcaatgacacaccttattggcaaat---gtgaaatacatcatttaatctggcgt 17612422  T
408 gacatgaattaaatacacaaatactcaatgattga 442  Q
    |||||||||| ||||||||||| || |||||||||    
17612421 gacatgaatt-aatacacaaatgcttaatgattga 17612388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 308 - 427
Target Start/End: Original strand, 17513010 - 17513126
Alignment:
308 gtttaattttgatttaatcagggacacaattgcaataagtaaagatataatgacacaccttatgagcaaatgtcgtgtaatacaccatacaatctgacgc 407  Q
    |||||||||||||||||| |  ||| ||||| |||||| ||||||||||||||||||| ||||  ||| ||   ||| || |||| ||| ||||||||||    
17513010 gtttaattttgatttaattatagactcaattacaataaataaagatataatgacacacattatatgcagat---gtgcaacacactatataatctgacgc 17513106  T
408 gacatgaattaaatacacaa 427  Q
    ||||||||||||||||||||    
17513107 gacatgaattaaatacacaa 17513126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 308 - 446
Target Start/End: Complemental strand, 9743772 - 9743637
Alignment:
308 gtttaattttgatttaatcagggacacaattgcaataagtaaagatataatgacacaccttatgagcaaatgtcgtgtaatacaccatacaatctgacgc 407  Q
    |||||||||||||||||||| | ||| ||||||||||||||||||| |||||| |||| |||||   ||||   ||| ||||||||||| ||| |||||     
9743772 gtttaattttgatttaatcaagaacataattgcaataagtaaagatttaatgaaacactttatggaaaaat---gtgcaatacaccatataatatgacgt 9743676  T
408 gacatgaattaaatacacaaatactcaatgattgatcat 446  Q
     ||||| |||||||||||||||  ||||| |||| ||||    
9743675 tacatggattaaatacacaaatgttcaataattggtcat 9743637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 308 - 370
Target Start/End: Complemental strand, 2570662 - 2570600
Alignment:
308 gtttaattttgatttaatcagggacacaattgcaataagtaaagatataatgacacaccttat 370  Q
    ||||| |||||||||||| ||||||||||||||||||| ||||||||||||||||||| ||||    
2570662 gtttacttttgatttaattagggacacaattgcaataaataaagatataatgacacactttat 2570600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 308 - 440
Target Start/End: Original strand, 22756796 - 22756924
Alignment:
308 gtttaattttgatttaatcagggacacaattgcaataagtaaagatataatgacacaccttatgagcaaatgtcgtgtaatacaccatacaatctgacgc 407  Q
    |||||||||||||| ||||||| || |||||| |||||||||||||||| || ||| |  |||||||||||||   | |||||||| || ||| ||| |     
22756796 gtttaattttgattcaatcagg-acgcaattggaataagtaaagatatagtggcacgctgtatgagcaaatgt---gcaatacaccgtataatttgatgt 22756891  T
408 gacatgaattaaatacacaaatactcaatgatt 440  Q
    | |||| ||||||||||||||||||||||||||    
22756892 ggcatgcattaaatacacaaatactcaatgatt 22756924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 308 - 431
Target Start/End: Complemental strand, 22729894 - 22729775
Alignment:
308 gtttaattttgatttaatcagggacacaattgcaataagtaaagatataatgacacaccttatgagcaaatgtcgtgtaatacaccatacaatctgacgc 407  Q
    |||||||||||||| ||||||| ||||| ||||||||||| |||||||| || |||||| |||||||||||   ||| |||||||| || ||| ||| |     
22729894 gtttaattttgattcaatcagg-acacagttgcaataagttaagatatagtggcacaccatatgagcaaat---gtgcaatacaccgtataatttgatgt 22729799  T
408 gacatgaattaaatacacaaatac 431  Q
    | |||| |||||||||||||||||    
22729798 ggcatgcattaaatacacaaatac 22729775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 335 - 498
Target Start/End: Original strand, 28293124 - 28293285
Alignment:
335 aattgcaataagtaaagatataatgacacaccttatgagcaaatgtcgtgtaatacaccatacaatctgacgcgacatgaattaaatacacaaatactca 434  Q
    |||||||||||||||||||||||| ||||| |||||  | ||||||   | |||||| |||| ||| ||| |   |||| ||||||||||   |||||||    
28293124 aattgcaataagtaaagatataataacacatcttataggtaaatgt---gcaatacatcatataatttgatgtagcatggattaaatacattgatactca 28293220  T
435 atgattgatcatagagttaactttacc-aaaaagttattctcataacttcaacatagaattttcc 498  Q
    |||||||| ||||  |||||||| ||| ||||||| |||||||| |||||| | |||||||||||    
28293221 atgattgaccatatggttaacttcaccgaaaaagtcattctcatgacttcagcgtagaattttcc 28293285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 308 - 380
Target Start/End: Original strand, 5915659 - 5915731
Alignment:
308 gtttaattttgatttaatcagggacacaattgcaataagtaaagatataatgacacaccttatgagcaaatgt 380  Q
    |||||||||||||||||||| |||||||||||||| ||||||| ||||| ||  ||||| ||| |||||||||    
5915659 gtttaattttgatttaatcaaggacacaattgcaacaagtaaaaatatagtggtacaccatataagcaaatgt 5915731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 386 - 500
Target Start/End: Complemental strand, 2704619 - 2704510
Alignment:
386 aatacaccatacaatctgacgcgacatgaattaaatacacaaatactcaatgattgatcatagagttaactttacca-aaaagttattctcataacttca 484  Q
    ||||||||||| |||  |||| ||| ||||||||||||||||||| |||||||||||||||    ||||||| |||| |||||| ||| |||| ||||||    
2704619 aatacaccatataat--gacgtgacgtgaattaaatacacaaatattcaatgattgatcat----ttaacttcaccagaaaagtcattttcatgacttca 2704526  T
485 acatagaattttcctt 500  Q
     |||| ||||||||||    
2704525 ccataaaattttcctt 2704510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 308 - 380
Target Start/End: Complemental strand, 37793568 - 37793496
Alignment:
308 gtttaattttgatttaatcagggacacaattgcaataagtaaagatataatgacacaccttatgagcaaatgt 380  Q
    |||||||||| |||||||||  ||||||||||||||||||||| ||||| ||  ||||| ||||| |||||||    
37793568 gtttaattttaatttaatcaaagacacaattgcaataagtaaaaatatagtggtacaccatatgaacaaatgt 37793496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 308 - 350
Target Start/End: Complemental strand, 5812751 - 5812709
Alignment:
308 gtttaattttgatttaatcagggacacaattgcaataagtaaa 350  Q
    ||||||||||||||||||||  |||||||||||||||||||||    
5812751 gtttaattttgatttaatcaatgacacaattgcaataagtaaa 5812709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 308 - 365
Target Start/End: Complemental strand, 47237046 - 47236989
Alignment:
308 gtttaattttgatttaatcagggacacaattgcaataagtaaagatataatgacacac 365  Q
    ||||||||| ||||||||||||  | ||||||||||||||||| || |||||||||||    
47237046 gtttaatttcgatttaatcaggtgcgcaattgcaataagtaaaaatctaatgacacac 47236989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 445 - 499
Target Start/End: Complemental strand, 37287788 - 37287732
Alignment:
445 atagagttaactttaccaaaaa--gttattctcataacttcaacatagaattttcct 499  Q
    |||| |||||||||||||||||  || |||||||| |||||| ||||||||||||||    
37287788 atagtgttaactttaccaaaaaaagtcattctcattacttcaccatagaattttcct 37287732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 309 - 360
Target Start/End: Complemental strand, 33255621 - 33255572
Alignment:
309 tttaattttgatttaatcagggacacaattgcaataagtaaagatataatga 360  Q
    ||||| ||||||||||| ||  ||||||||||||||||||||||||| ||||    
33255621 tttaactttgatttaataag--acacaattgcaataagtaaagatatgatga 33255572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 86; Significance: 8e-41; HSPs: 17)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 86; E-Value: 8e-41
Query Start/End: Original strand, 308 - 499
Target Start/End: Original strand, 13876783 - 13876968
Alignment:
308 gtttaattttgatttaatcagggacacaattgcaataagtaaagatataatgacacaccttatgagcaaatgtcgtgtaatacaccatacaatctgacgc 407  Q
    |||||||||||||||||||| ||| ||||||||||||| |||| |||||||||||||| ||||| ||||||   |||||||||||||||  || |||||     
13876783 gtttaattttgatttaatcaaggatacaattgcaataactaaaaatataatgacacactttatgggcaaat---gtgtaatacaccatatgatatgacgt 13876879  T
408 gacatgaattaaatacacaaatactcaatgattgatcatagagttaactttacca-aaaagttattctcataacttcaacatagaattttcct 499  Q
    | |||  ||||||||||||||||||||||||||||||||    ||||||| |||| |||||| ||| ||||||||||| ||||||||||||||    
13876880 ggcattgattaaatacacaaatactcaatgattgatcat----ttaacttcaccataaaagtcattttcataacttcaccatagaattttcct 13876968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 308 - 440
Target Start/End: Complemental strand, 27118514 - 27118385
Alignment:
308 gtttaattttgatttaatcagggacacaattgcaataagtaaagatataatgacacaccttatgagcaaatgtcgtgtaatacaccatacaatctgacgc 407  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||   ||| |||||| |||| ||| |||||     
27118514 gtttaattttgatttaatcagggacacaattgcaataagtaaagatataatgacacaccttatgaacaaat---gtgcaatacatcatataatatgacgt 27118418  T
408 gacatgaattaaatacacaaatactcaatgatt 440  Q
    | |||| |||||||||| |||| ||| ||||||    
27118417 ggcatggattaaatacataaatgctccatgatt 27118385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 308 - 442
Target Start/End: Original strand, 10758164 - 10758295
Alignment:
308 gtttaattttgatttaatcagggacacaattgcaataagtaaagatataatgacacaccttatgagcaaatgtcgtgtaatacaccatacaatctgacgc 407  Q
    |||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||  |||  ||||||   ||  ||||||||||| ||||||| |     
10758164 gtttaattttgatttaattagggacacaattgcaataagtaaaaatataatgacacacactataggcaaat---gttcaatacaccatataatctgatgt 10758260  T
408 gacatgaattaaatacacaaatactcaatgattga 442  Q
    | |||||||||||||||||||| ||||||||||||    
10758261 ggcatgaattaaatacacaaatgctcaatgattga 10758295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 308 - 436
Target Start/End: Complemental strand, 16132659 - 16132534
Alignment:
308 gtttaattttgatttaatcagggacacaattgcaataagtaaagatataatgacacaccttatgagcaaatgtcgtgtaatacaccatacaatctgacgc 407  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||| ||||||   ||| |||||||| || ||||| |||     
16132659 gtttaattttgatttaatcagagacacaattgcaataagtaaagatataatgacacacattatgtgcaaat---gtgcaatacaccgtataatctcacgt 16132563  T
408 gacatgaattaaatacacaaatactcaat 436  Q
      |||| ||||||||||||||| ||||||    
16132562 tgcatggattaaatacacaaatgctcaat 16132534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 315 - 442
Target Start/End: Complemental strand, 16127695 - 16127573
Alignment:
315 tttgatttaatcagggacacaattgcaataagtaaagatataatgacacaccttatgagcaaatgtcgtgtaatacaccatacaatctgacgcgacatga 414  Q
    ||||||||| |||||||||  ||||||||||||||| |||||||||||||||||||||| ||||   ||| |||||| |||| ||||||||| | ||||     
16127695 tttgatttattcagggaca--attgcaataagtaaacatataatgacacaccttatgagtaaat---gtgcaatacatcatataatctgacgtgtcatgg 16127601  T
415 attaaatacacaaatactcaatgattga 442  Q
    |||||||||||||||  |||||||||||    
16127600 attaaatacacaaatgatcaatgattga 16127573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 308 - 441
Target Start/End: Complemental strand, 15964284 - 15964154
Alignment:
308 gtttaattttgatttaatcagggacacaattgcaataagtaaagatataatgacacaccttatgagcaaatgtcgtgtaatacaccatacaatctgacgc 407  Q
    ||||||||||||||||||||||||||||||||  || |||||  ||||||||||||| ||||||  |||||   ||| ||||||| ||| ||| |||||     
15964284 gtttaattttgatttaatcagggacacaattgatatcagtaagtatataatgacacatcttatggacaaat---gtgcaatacactatataatttgacgt 15964188  T
408 gacatgaattaaatacacaaatactcaatgattg 441  Q
    |||||  ||||||||||||||| || ||||||||    
15964187 gacatagattaaatacacaaatgcttaatgattg 15964154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 308 - 500
Target Start/End: Complemental strand, 421577 - 421386
Alignment:
308 gtttaattttgatttaatcagggacacaattgcaataagtaaagatataatgacacaccttatgagcaaatgtcgtgtaatacaccatacaatctgacgc 407  Q
    |||||||||||||||||||| ||||||||||||||| |||||||||||||||  ||| | ||| || ||||   ||| |||| ||  || ||| ||||      
421577 gtttaattttgatttaatcaaggacacaattgcaattagtaaagatataatggaacatcgtataagtaaat---gtgcaataaactgtataatttgacat 421481  T
408 gacatgaattaaatacacaaatactcaatgattgatcatagagttaactttacc--aaaaagttattctcataacttcaacatagaattttcctt 500  Q
    |||||  |||||||||||||||  |||||||||||||||     | |||| | |  ||||||| ||||||||||||||| |||||||||||||||    
421480 gacatacattaaatacacaaatgttcaatgattgatcattctcatgacttcagcaaaaaaagtcattctcataacttcatcatagaattttcctt 421386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 308 - 380
Target Start/End: Original strand, 21263909 - 21263981
Alignment:
308 gtttaattttgatttaatcagggacacaattgcaataagtaaagatataatgacacaccttatgagcaaatgt 380  Q
    |||||||||||||||||||| |||||||||||||||||||||| ||||| ||  ||||| ||||| |||||||    
21263909 gtttaattttgatttaatcaaggacacaattgcaataagtaaaaatatagtggtacaccatatgaacaaatgt 21263981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 308 - 446
Target Start/End: Complemental strand, 25943382 - 25943247
Alignment:
308 gtttaattttgatttaatcagggacacaattgcaataagtaaagatataatgacacaccttatgagcaaatgtcgtgtaatacaccatacaatctgacgc 407  Q
    ||||||||||||||||||||   ||| |||| |||||| ||||||||||||| ||| | |||| ||||||   |||| ||||||||||| |||||||||     
25943382 gtttaattttgatttaatcaaaaacaaaattacaataaataaagatataatggcacgcattatcagcaaa---cgtgcaatacaccatataatctgacgt 25943286  T
408 gacatgaattaaatacacaaatactcaatgattgatcat 446  Q
    ||| |  |||||||| || ||| |||||| |||||||||    
25943285 gacgtcgattaaataaactaatgctcaataattgatcat 25943247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 308 - 426
Target Start/End: Original strand, 31804948 - 31805063
Alignment:
308 gtttaattttgatttaatcagggacacaattgcaataagtaaagatataatgacacaccttatgagcaaatgtcgtgtaatacaccatacaatctgacgc 407  Q
    ||||||||||||||||||||| ||||||||| ||| ||||||||||||||||||| |  ||||  ||||||   ||| ||||||||||| ||||| |||     
31804948 gtttaattttgatttaatcagtgacacaatttcaagaagtaaagatataatgacatatgttatcggcaaat---gtgcaatacaccatataatctaacgt 31805044  T
408 gacatgaattaaatacaca 426  Q
    | |||  ||||||||||||    
31805045 ggcatagattaaatacaca 31805063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 308 - 447
Target Start/End: Complemental strand, 28012251 - 28012114
Alignment:
308 gtttaattttgatttaatcagggacacaattgcaata--agtaaagatataatgacacaccttatgagcaaatgtcgtgtaatacaccatacaatctgac 405  Q
    |||||||||||||||||||||| | ||||||  ||||  |||||||||||| |  |||| |||| ||||||||||   | ||||||||||| ||| | |     
28012251 gtttaattttgatttaatcagg-atacaattataatataagtaaagatatagtagcacatcttaggagcaaatgt---gcaatacaccatataatttaat 28012156  T
406 gcgacatgaattaaatacacaaatactcaatgattgatcata 447  Q
    | |||||| |||||||||||||||||||||||| | ||||||    
28012155 gtgacatgcattaaatacacaaatactcaatgaataatcata 28012114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 308 - 454
Target Start/End: Original strand, 17695871 - 17696020
Alignment:
308 gtttaattttgatttaatcagggacacaattgcaataagtaaagatataatgacacacct------tatgagcaaatgtcgtgtaatacaccatacaatc 401  Q
    ||||||||||||||||||||  ||| ||||| |||||||||||| |||||||||||||||      ||||| ||||| |     ||| |||||||  |||    
17695871 gtttaattttgatttaatcaaagactcaattacaataagtaaagttataatgacacacctacaccttatgaacaaatatac---aatgcaccatatgatc 17695967  T
402 tgacgcgacatgaattaaatacacaaatactcaatgattgatcatagagttaa 454  Q
    ||||| |  |||||||||||||| ||||| ||||||||||| |||| ||||||    
17695968 tgacgtggtatgaattaaatacataaatattcaatgattgaccataaagttaa 17696020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 381 - 492
Target Start/End: Original strand, 34491439 - 34491551
Alignment:
381 cgtgtaatacaccatacaatctgacgcgacatgaattaaatacacaaatactcaatgattgatcatagagttaactttacca-aaaagttattctcataa 479  Q
    |||| |||||| | || ||||||| | | |||| |||||||||||||||  | |||||||||||||||| ||||||| | || |||| |||||||||| |    
34491439 cgtggaatacatcttataatctgatgtggcatggattaaatacacaaatgtttaatgattgatcatagaattaacttcatcagaaaaattattctcatca 34491538  T
480 cttcaacatagaa 492  Q
    ||||| |||||||    
34491539 cttcaccatagaa 34491551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 445 - 504
Target Start/End: Complemental strand, 1547337 - 1547277
Alignment:
445 atagagttaactttacca-aaaagttattctcataacttcaacatagaattttccttttaa 504  Q
    |||| |||||||| |||| |||||| |||||||| |||||| |||||||||||||||||||    
1547337 atagtgttaacttcaccagaaaagtcattctcatgacttcaccatagaattttccttttaa 1547277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 445 - 502
Target Start/End: Original strand, 37619022 - 37619080
Alignment:
445 atagagttaactttaccaaaaa-gttattctcataacttcaacatagaattttcctttt 502  Q
    |||| |||||||| |||||||| || ||||| ||||||||| |||||||||||||||||    
37619022 atagtgttaacttcaccaaaaaagtcattcttataacttcaccatagaattttcctttt 37619080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 465 - 501
Target Start/End: Original strand, 4964062 - 4964098
Alignment:
465 aagttattctcataacttcaacatagaattttccttt 501  Q
    |||| ||||||||||||||| ||||||||||||||||    
4964062 aagtaattctcataacttcaccatagaattttccttt 4964098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 463 - 507
Target Start/End: Complemental strand, 48620668 - 48620624
Alignment:
463 aaaagttattctcataacttcaacatagaattttccttttaagaa 507  Q
    |||||| ||| | ||||||||||||||||||||||||||| ||||    
48620668 aaaagtcattttaataacttcaacatagaattttcctttttagaa 48620624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 83; Significance: 5e-39; HSPs: 25)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 83; E-Value: 5e-39
Query Start/End: Original strand, 309 - 500
Target Start/End: Original strand, 40640496 - 40640684
Alignment:
309 tttaattttgatttaatcagggacacaattgca---ataagtaaagatataatgacacaccttatgagcaaatgtcgtgtaatacaccatacaatctgac 405  Q
    ||||||||||||||||||| |||||||||||||   ||||||||| ||||||||||||| |||||| ||||||||   | ||||||||||| ||| ||||    
40640496 tttaattttgatttaatcaaggacacaattgcagcaataagtaaaaatataatgacacatcttatgggcaaatgt---gcaatacaccatataatatgac 40640592  T
406 gcgacatgaattaaatacacaaatactcaatgattgatcatagagttaactttacca-aaaagttattctcataacttcaacatagaattttcctt 500  Q
    | |||||| ||||||||||||||| |||||||||||| |||    ||||||| |||| |||||| |||||||| |||||| |||||||||||||||    
40640593 gtgacatggattaaatacacaaatgctcaatgattgaccat----ttaacttcaccagaaaagtcattctcatgacttcaccatagaattttcctt 40640684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 81; E-Value: 7e-38
Query Start/End: Original strand, 308 - 498
Target Start/End: Original strand, 49359492 - 49359676
Alignment:
308 gtttaattttgatttaatcagggacacaattgcaataagtaaagatataatgacacaccttatgagcaaatgtcgtgtaatacaccatacaatctgacgc 407  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||   ||| |||||| |||| ||| |||||     
49359492 gtttaattttgatttaatcagggacacaattgcattaagtaaagatataatgacacaccttatgagcaaat---gtgcaatacatcatataatatgacgt 49359588  T
408 gacatgaattaaatacacaaatactcaatgattgatcatagagttaactttac-caaaaagttattctcataacttcaacatagaattttcc 498  Q
    | |||| |||||||||||||||  ||||||||||  |||    ||||||| ||  ||||||| ||| |||| |||||| |||||||||||||    
49359589 gtcatggattaaatacacaaatgttcaatgattggccat----ttaacttcacaaaaaaagtcattttcatgacttcaccatagaattttcc 49359676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 308 - 440
Target Start/End: Original strand, 7568583 - 7568712
Alignment:
308 gtttaattttgatttaatcagggacacaattgcaataagtaaagatataatgacacaccttatgagcaaatgtcgtgtaatacaccatacaatctgacgc 407  Q
    ||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||| ||||| ||||||   ||| |||||  |||| |||||||||     
7568583 gtttaattttgatttaatcagagacacaattgtaataagtaaagatataatgacacactttatgtgcaaat---gtgcaatactgcatataatctgacgt 7568679  T
408 gacatgaattaaatacacaaatactcaatgatt 440  Q
    |||||||||||||||||||||| ||||||||||    
7568680 gacatgaattaaatacacaaatgctcaatgatt 7568712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 308 - 499
Target Start/End: Original strand, 45879351 - 45879547
Alignment:
308 gtttaattttgatttaatcagggacacaattgcaataagtaaagatataatgacacaccttatgagcaaatgt--------cgtgtaatacaccatacaa 399  Q
    |||||||||||||||||||||| | |||||| |||||||||||||||||| ||||||||||||| ||||||||         ||| ||||||||||| ||    
45879351 gtttaattttgatttaatcaggaaaacaatttcaataagtaaagatataacgacacaccttatgggcaaatgtgcaacaaatgtgcaatacaccatataa 45879450  T
400 tctgacgcgacatgaattaaatacacaaatactcaatgattgatcatagagttaactttacca-aaaagttattctcataacttcaacatagaattttcc 498  Q
    ||||||| | |||| ||||||||||||||| |||||||||||  |||    |||||||||||| |||||| |||||||| |||||| |||||||||||||    
45879451 tctgacgtggcatggattaaatacacaaatgctcaatgattggccat----ttaactttaccagaaaagtcattctcatgacttcagcatagaattttcc 45879546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 308 - 442
Target Start/End: Complemental strand, 44880974 - 44880844
Alignment:
308 gtttaattttgatttaatcagggacacaattgcaataagtaaagatataatgacacaccttatgagcaaatgtcgtgtaatacaccatacaatctgacgc 407  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||   ||| |||||||||||  ||||||||     
44880974 gtttaattttgatttaatcagggacacaattgtaataagtaaagatataatgacac-ccttatgagcaaat---gtgcaatacaccatattatctgacgt 44880879  T
408 gacatgaattaaatacacaaatactcaatgattga 442  Q
    |||||| |||||||||| ||||  |||||||||||    
44880878 gacatggattaaatacataaatgttcaatgattga 44880844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 76; E-Value: 7e-35
Query Start/End: Original strand, 308 - 497
Target Start/End: Original strand, 19606778 - 19606961
Alignment:
308 gtttaattttgatttaatcagggacacaattgcaataagtaaagatataatgacacaccttatgagcaaatgtcgtgtaatacaccatacaatctgacgc 407  Q
    |||||||||||||||||| |||||||| ||||||| ||||||||||||||||||||||||||||   ||||   ||  ||||||||||| |||||||||     
19606778 gtttaattttgatttaataagggacacgattgcaacaagtaaagatataatgacacaccttatggaaaaat---gttcaatacaccatataatctgacgt 19606874  T
408 gacatgaattaaatacacaaatactcaatgattgatcatagagttaactttacca-aaaagttattctcataacttcaacatagaattttc 497  Q
    ||| |||||||||||||||||| |||||| |||| ||||    ||||||| |||| |||||| ||| | ||||||||| ||||||||||||    
19606875 gacctgaattaaatacacaaatgctcaatcattggtcat----ttaacttcaccagaaaagtcatttttataacttcaccatagaattttc 19606961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 308 - 500
Target Start/End: Original strand, 38392492 - 38392678
Alignment:
308 gtttaattttgatttaatcagggacacaattgcaataagtaaagatataatgacacaccttatgagcaaatgtcgtgtaatacaccatacaatctgacgc 407  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||| ||||||   ||| |||||| |||| |||||| |      
38392492 gtttaattttgatttaatcagggacacaattgcaataagtaaatatataatgacacacattatgggcaaat---gtgcaatacatcatataatctgtcat 38392588  T
408 gacatgaattaaatacacaaatactcaatgattgatcatagagttaactttacc-aaaaagttattctcataacttcaacatagaattttcctt 500  Q
    |||||| |||||||||||||||  ||||||| ||| |||    ||||||| ||| ||||||| |||||||| |||||| |||| ||||| ||||    
38392589 gacatggattaaatacacaaatgttcaatgactgaccat----ttaacttcaccaaaaaagtcattctcatgacttcaccatataatttccctt 38392678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 308 - 502
Target Start/End: Original strand, 32180615 - 32180799
Alignment:
308 gtttaattttgatttaatcagggacacaattgcaataagtaaagatataatgacacaccttatgagcaaatgtcgtgtaatacaccatacaatctgacgc 407  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||   ||| |||  ||| || |||||||||     
32180615 gtttaattttgatttaatcagggacacaattgcaataagtaaagatataatgacacacctta-ga-caaat---gtgcaat--accgtataatctgacgt 32180707  T
408 gacatgaattaaatacacaaatactcaatgattgatcatagagttaactttacca-aaaagttattctcataacttcaacatagaattttcctttt 502  Q
    ||||| |||||||||||||||| |||||||||| | |||    ||||||| || | |||||| ||||||||||||||| | || ||||||| ||||    
32180708 gacataaattaaatacacaaatgctcaatgattaaccat----ttaacttcactagaaaagtcattctcataacttcaccgtacaattttcatttt 32180799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 308 - 498
Target Start/End: Complemental strand, 42204528 - 42204342
Alignment:
308 gtttaattttgatttaatcagggacacaattgcaataagtaaagatataatgacacaccttatgagcaaatgtcgtgtaatacaccatacaatctgacgc 407  Q
    |||||||||||||||||||||| || ||||||||||||||||||||||| |||||||||||||||| |||| |   | ||||||||||| |||| || |     
42204528 gtttaattttgatttaatcagg-actcaattgcaataagtaaagatata-tgacacaccttatgagtaaatat---gcaatacaccatataatccgatgt 42204434  T
408 gacatgaattaaatacacaaatactcaatgattgatcatagagttaactttacca-aaaagttattctcataacttcaacatagaattttcc 498  Q
    |||||  ||||||||||||||| |||||| || | |||||  |||||||| | || |||||| |||||||  ||||||  ||||||||||||    
42204433 gacatagattaaatacacaaatgctcaataataggtcatatggttaacttcatcagaaaagtcattctcacgacttcacgatagaattttcc 42204342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 335 - 495
Target Start/End: Complemental strand, 4556702 - 4556543
Alignment:
335 aattgcaataagtaaagatataatgacacaccttatgagcaaatgtcgtgtaatacaccatacaatctgacgcgacatg----aattaaatacacaaata 430  Q
    ||||| ||||||||||||||||||||||||| ||||||||||||   ||| ||||| ||||| ||||||||| ||||||    |||||||||||||||||    
4556702 aattgtaataagtaaagatataatgacacacattatgagcaaat---gtgcaatacgccatataatctgacgtgacatgaattaattaaatacacaaata 4556606  T
431 ctcaatgattgatcatagagttaactttacca-aaaagttattctcataacttcaacatagaattt 495  Q
    ||||||||||| ||||||   |||||| || | |||||| ||| |||| |||||| ||||||||||    
4556605 ctcaatgattggtcatag---taacttcacgagaaaagtcattttcatgacttcaccatagaattt 4556543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 308 - 380
Target Start/End: Original strand, 7758287 - 7758359
Alignment:
308 gtttaattttgatttaatcagggacacaattgcaataagtaaagatataatgacacaccttatgagcaaatgt 380  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||| ||||||||    
7758287 gtttaattttgatttaattagggacacaattgcaataagtaaagatataatgacgcaccttatgggcaaatgt 7758359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 333 - 429
Target Start/End: Original strand, 53811865 - 53811958
Alignment:
333 acaattgcaataagtaaagatataatgacacaccttatgagcaaatgtcgtgtaatacaccatacaatctgacgcgacatgaattaaatacacaaat 429  Q
    ||||||||| |||||||||||||||||||||||||||||  |||||   ||| ||||||||||| ||||||||| |||||| |||||||||| ||||    
53811865 acaattgcattaagtaaagatataatgacacaccttatgtacaaat---gtggaatacaccatataatctgacgtgacatggattaaatacataaat 53811958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 308 - 474
Target Start/End: Complemental strand, 43485495 - 43485331
Alignment:
308 gtttaattttgatttaatcagggacacaattgcaataagtaaagatataatgacacaccttatgagcaaatgtcgtgtaatacaccatacaatctgacgc 407  Q
    |||||||||| |||||||||||||| ||||| ||||||||||| ||||||||||||| |||| | ||||||    || ||| ||||||| ||||||| |     
43485495 gtttaattttaatttaatcagggactcaattacaataagtaaaaatataatgacacatcttaggggcaaat---atgcaatgcaccatataatctgaagt 43485399  T
408 gacatgaattaaatacacaaatactcaatgattgatcatagagttaactttacca-aaaagttattct 474  Q
    | |||||||||||||   ||||  |||||||||| ||||||  ||||||| |||| |||||| |||||    
43485398 ggcatgaattaaatatgaaaatgttcaatgattggtcataggattaacttcaccagaaaagtcattct 43485331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 308 - 380
Target Start/End: Complemental strand, 47870375 - 47870304
Alignment:
308 gtttaattttgatttaatcagggacacaattgcaataagtaaagatataatgacacaccttatgagcaaatgt 380  Q
    |||| ||||||||||||||| |||| ||||||||||| |||||||||||||||||||||||||| ||||||||    
47870375 gtttgattttgatttaatcaaggactcaattgcaatacgtaaagatataatgacacaccttatg-gcaaatgt 47870304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 308 - 498
Target Start/End: Original strand, 47930531 - 47930714
Alignment:
308 gtttaattttgatttaatcagggacacaattgcaataagtaaagatataatgacacaccttatgagcaaatgtcgtgtaatacaccatacaatctgacgc 407  Q
    |||||||||||||||||| |||||||||||||||||||||||||  ||||||||||  |||| |  ||||    ||| ||||||||||| |||| ||       
47930531 gtttaattttgatttaatgagggacacaattgcaataagtaaaggaataatgacacgtcttagggacaaa---ggtgcaatacaccatataatc-gatat 47930626  T
408 gacatgaattaaatacacaaatactcaatgattgatcatagagttaactttacca-aaaagttattctcataacttcaacatagaattttcc 498  Q
     ||||| |||||||||||||||  |||||||||| ||||    ||||||| |||| |||| | ||| |||| |||||| |||||||||||||    
47930627 aacatggattaaatacacaaatgttcaatgattggtcat----ttaacttcaccagaaaaatcattttcatgacttcaccatagaattttcc 47930714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 308 - 380
Target Start/End: Original strand, 48155077 - 48155149
Alignment:
308 gtttaattttgatttaatcagggacacaattgcaataagtaaagatataatgacacaccttatgagcaaatgt 380  Q
    |||||||||||||||||||| |||||||||||||| ||||||| ||||| ||  ||||| |||||||||||||    
48155077 gtttaattttgatttaatcaaggacacaattgcaacaagtaaaaatatagtggtacaccatatgagcaaatgt 48155149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 308 - 497
Target Start/End: Complemental strand, 26000716 - 26000525
Alignment:
308 gtttaattttgatttaatcagggacacaattgcaataagtaaagatataatgacacaccttatgagcaaatgtcgtgtaatacaccatacaat------- 400  Q
    ||||||||||||||||||||  ||||||||||||||||||||||  |||||||||||| ||| ||| ||||    || |||||||| || |||           
26000716 gtttaattttgatttaatcaatgacacaattgcaataagtaaagcgataatgacacactttacgagaaaat---atgcaatacaccgtataatcctataa 26000620  T
401 --ctgacgcgacatgaattaaatacacaaatactcaatgattgatcatagagttaactttaccaaaaagttattctcataacttcaacatagaattttc 497  Q
      || ||| ||||||||||||||||||||||  ||||| || ||||||    |||| ||||||||||| ||||| ||||||||| | |||| |||||||    
26000619 tcctaacgtgacatgaattaaatacacaaatgttcaataatcgatcat----ttaattttaccaaaaaattattttcataactttaccataaaattttc 26000525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 29 - 82
Target Start/End: Complemental strand, 47870531 - 47870478
Alignment:
29 aaaggtatggttggtgttggaccagatgaatttttgagcgaagggtatgaacaa 82  Q
    ||||||||||||||||||||| |||||||||||| ||| ||| |||||||||||    
47870531 aaaggtatggttggtgttggagcagatgaattttagagtgaatggtatgaacaa 47870478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 308 - 371
Target Start/End: Complemental strand, 51878298 - 51878235
Alignment:
308 gtttaattttgatttaatcagggacacaattgcaataagtaaagatataatgacacaccttatg 371  Q
    |||||||||| |||||||| | ||||||||||||||||||||  ||||||| |||||| |||||    
51878298 gtttaatttttatttaatcggagacacaattgcaataagtaacaatataataacacacattatg 51878235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 308 - 441
Target Start/End: Complemental strand, 54606890 - 54606760
Alignment:
308 gtttaattttgatttaatcagggacacaattgcaataagtaaagatataatgacacaccttatgagcaaatgtcgtgtaatacaccatacaatctgacgc 407  Q
    |||||||||| ||||||||| || ||||||||||||||||||| |||||    |||||| |||||| ||||   ||| |||||||| ||  || ||||      
54606890 gtttaattttaatttaatcaagggcacaattgcaataagtaaaaatatagcagcacaccgtatgagtaaat---gtgcaatacaccgtatgatttgacat 54606794  T
408 gacatgaattaaatacacaaatactcaatgattg 441  Q
    |||||  |||||||||||||||  ||||||||||    
54606793 gacatacattaaatacacaaatgttcaatgattg 54606760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 309 - 355
Target Start/End: Complemental strand, 11018600 - 11018554
Alignment:
309 tttaattttgatttaatcagggacacaattgcaataagtaaagatat 355  Q
    ||||||||||||||||| ||||| |||||||||||||||||| ||||    
11018600 tttaattttgatttaattagggatacaattgcaataagtaaaaatat 11018554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 386 - 441
Target Start/End: Original strand, 18272163 - 18272218
Alignment:
386 aatacaccatacaatctgacgcgacatgaattaaatacacaaatactcaatgattg 441  Q
    ||||||||||| ||||||||  || |||||||||||||||||||  ||||||||||    
18272163 aatacaccatataatctgacttgatatgaattaaatacacaaatgttcaatgattg 18272218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 420 - 502
Target Start/End: Complemental strand, 47870293 - 47870210
Alignment:
420 atacacaaatactcaatgattgatcatagagttaactttacc-aaaaagttattctcataacttcaacatagaattttcctttt 502  Q
    ||||||||||| |||||| ||| |||||   ||||||| | | ||||||| |||||||||||||||  ||||||||||||||||    
47870293 atacacaaatattcaatggttggtcataagattaacttcatcgaaaaagtcattctcataacttcagtatagaattttcctttt 47870210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 462 - 499
Target Start/End: Original strand, 7327632 - 7327669
Alignment:
462 aaaaagttattctcataacttcaacatagaattttcct 499  Q
    ||||||| ||||||||||||||| ||||||||||||||    
7327632 aaaaagtcattctcataacttcaccatagaattttcct 7327669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 308 - 380
Target Start/End: Complemental strand, 29896048 - 29895976
Alignment:
308 gtttaattttgatttaatcagggacacaattgcaataagtaaagatataatgacacaccttatgagcaaatgt 380  Q
    |||||||||||||||||||| |||| ||||| ||||  || || ||||| ||  ||||| |||||||||||||    
29896048 gtttaattttgatttaatcaaggacccaattccaatgggttaaaatatagtggtacaccgtatgagcaaatgt 29895976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 79; Significance: 1e-36; HSPs: 13)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 308 - 498
Target Start/End: Original strand, 8133423 - 8133609
Alignment:
308 gtttaattttgatttaatcagggacacaattgcaataagtaaagatataatgacacaccttatgagcaaatgtcgtgtaatacaccatacaatctgacgc 407  Q
    |||||||||||||||||| |||||| |||||||||||||||| |||||||||||| ||||||| ||||||   |||| ||||||||||| |||||||||     
8133423 gtttaattttgatttaattagggacgcaattgcaataagtaatgatataatgacagaccttataagcaaa---cgtgcaatacaccatataatctgacgt 8133519  T
408 gacatgaattaaatacacaaatactcaatgattgatcatagagttaactttacc-aaaaagttattctcataacttcaacatagaattttcc 498  Q
    | | |||||||||||||||||| || |||||||||||||    ||||||| ||| ||||||||||||| || ||||||   |||||||||||    
8133520 gtcttgaattaaatacacaaatgcttaatgattgatcat--ttttaacttcaccaaaaaagttattcttatgacttcacagtagaattttcc 8133609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 78; E-Value: 5e-36
Query Start/End: Original strand, 308 - 499
Target Start/End: Original strand, 22955176 - 22955361
Alignment:
308 gtttaattttgatttaatcagggacacaattgcaataagtaaagatataatgacacaccttatgagcaaatgtcgtgtaatacaccatacaatctgacgc 407  Q
    ||||||| |||||||||| |||||||||||||||||||||||||||| ||||||| |||||||||||||||   ||| ||||||||||| ||| |||||     
22955176 gtttaatgttgatttaataagggacacaattgcaataagtaaagatacaatgacataccttatgagcaaat---gtgcaatacaccatataatttgacgt 22955272  T
408 gacatgaattaaatacacaaatactcaatgattgatcatagagttaactttacca-aaaagttattctcataacttcaacatagaattttcct 499  Q
    |||||| |||||||||||||||  ||||| ||||| |||    ||||||| |||| |||||| |||||||| |||||| |||||  |||||||    
22955273 gacatggattaaatacacaaatgttcaataattgaccat----ttaacttcaccagaaaagtcattctcattacttcaccatagttttttcct 22955361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 308 - 446
Target Start/End: Complemental strand, 7743103 - 7742968
Alignment:
308 gtttaattttgatttaatcagggacacaattgcaataagtaaagatataatgacacaccttatgagcaaatgtcgtgtaatacaccatacaatctgacgc 407  Q
    |||||||||| |||||||||||| |||||||||||||||||||||||||||||||| |||||||  |||||   ||  ||||||||||| ||||| |||     
7743103 gtttaattttaatttaatcaggggcacaattgcaataagtaaagatataatgacacgccttatggacaaat---gtacaatacaccatataatctaacgt 7743007  T
408 gacatgaattaaatacacaaatactcaatgattgatcat 446  Q
    |||||  ||||||||||||||||||||||||||||||||    
7743006 gacatagattaaatacacaaatactcaatgattgatcat 7742968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 308 - 442
Target Start/End: Original strand, 37854160 - 37854289
Alignment:
308 gtttaattttgatttaatcagggacacaattgcaataagtaaagatataatgacacaccttatgagcaaatgtcgtgtaatacaccatacaatctgacgc 407  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||  ||| |||||||||||||||   ||| ||||||||||| ||| |||||     
37854160 gtttaattttgatttaatcagggacacaattgcaatcagtaaagatataa--acataccttatgagcaaat---gtgcaatacaccatataatgtgacgt 37854254  T
408 gacatgaattaaatacacaaatactcaatgattga 442  Q
    |||||| ||||||||||||||| |||||| |||||    
37854255 gacatggattaaatacacaaatgctcaataattga 37854289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 313 - 498
Target Start/End: Original strand, 23402240 - 23402419
Alignment:
313 attttgatttaatcagggacacaattgcaataagtaaagatataatgacacaccttatgagcaaatgtcgtgtaatacaccatacaatctgacgcgacat 412  Q
    ||||||||||||||||||||||||||| |||||||||| ||||||||||| | ||||||  |||||   | | ||||||||||| ||| ||||| |||||    
23402240 attttgatttaatcagggacacaattgaaataagtaaatatataatgacatatcttatggacaaat---gcgcaatacaccatataatatgacgtgacat 23402336  T
413 gaattaaatacacaaatactcaatgattgatcatagagttaactttacca-aaaagttattctcataacttcaacatagaattttcc 498  Q
    |||||||||||||| ||  ||||||||||| |||    ||||||| |||| |||||| |||||||| |||||  |||||||||||||    
23402337 gaattaaatacacagatgttcaatgattgaccat----ttaacttcaccagaaaagtcattctcatgacttcgccatagaattttcc 23402419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 308 - 466
Target Start/End: Original strand, 4618619 - 4618770
Alignment:
308 gtttaattttgatttaatcagggacacaattgcaataagtaaagatataatgacacaccttatgagcaaatgtcgtgtaatacaccatacaatctgacgc 407  Q
    |||||||||||||||||| ||| | ||||||||||||| |||| |||||||||||||  |||||| |||||   ||| ||||||||||| ||| ||| ||    
4618619 gtttaattttgatttaatgaggtatacaattgcaataaataaatatataatgacacattttatgaacaaat---gtgcaatacaccatataatttgaagc 4618715  T
408 gacatgaattaaatacacaaatactcaatgattgatcatagagttaactttaccaaaaa 466  Q
    ||||||||||||||||||||||  |||||||||  ||||    ||||||||||||||||    
4618716 gacatgaattaaatacacaaatgttcaatgattagtcat----ttaactttaccaaaaa 4618770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 308 - 446
Target Start/End: Complemental strand, 5781700 - 5781567
Alignment:
308 gtttaattttgatttaatcagggacacaattgcaataagtaaagatataatgacacaccttatgagcaaatgtcgtgtaatacaccatacaatctgacgc 407  Q
    |||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||  |||||  |||||    || ||||||||||| ||  |||||     
5781700 gtttaattttgatttaatcaaggacacaattgcaataaataaagatataatgacacattttatggtcaaat---atgcaatacaccatataa--tgacgt 5781606  T
408 gacatgaattaaatacacaaatactcaatgattgatcat 446  Q
    |||||| |||||||||||||||| | |||||||||||||    
5781605 gacatggattaaatacacaaatatttaatgattgatcat 5781567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 308 - 436
Target Start/End: Complemental strand, 19786468 - 19786343
Alignment:
308 gtttaattttgatttaatcagggacacaattgcaataagtaaagatataatgacacaccttatgagcaaatgtcgtgtaatacaccatacaatctgacgc 407  Q
    |||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||    |||||   ||| ||| || |||| ||| |||||     
19786468 gtttaattttgatttaatcaaggactcaattgcaataagtaaagatataatgacacaccttacagacaaat---gtgcaatgcatcatataatatgacgt 19786372  T
408 gacatgaattaaatacacaaatactcaat 436  Q
    | |||||||||||||||||||| ||||||    
19786371 ggcatgaattaaatacacaaatgctcaat 19786343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 308 - 446
Target Start/End: Complemental strand, 49002408 - 49002275
Alignment:
308 gtttaattttgatttaatcagggacacaattgcaataagtaaagatataatgacacaccttatgagcaaatgtcgtgtaatacaccatacaatctgacgc 407  Q
    |||||||||||||||||||||  |||||||||||||||||||||||||||||||||  |||| | | ||||||   | ||||||||||| |||||||       
49002408 gtttaattttgatttaatcagacacacaattgcaataagtaaagatataatgacac--cttaagggaaaatgt---gcaatacaccatataatctgatat 49002314  T
408 gacatgaattaaatacacaaatactcaatgattgatcat 446  Q
    |  ||| ||||||||||||||||||||||||||| ||||    
49002313 ggtatggattaaatacacaaatactcaatgattgttcat 49002275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 308 - 364
Target Start/End: Complemental strand, 40382073 - 40382016
Alignment:
308 gtttaattttgatttaatcagggacacaa-ttgcaataagtaaagatataatgacaca 364  Q
    |||||||||| ||||||| |||||||||| ||| ||||||||||||||||||||||||    
40382073 gtttaatttttatttaattagggacacaaattgtaataagtaaagatataatgacaca 40382016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 308 - 347
Target Start/End: Complemental strand, 4902504 - 4902465
Alignment:
308 gtttaattttgatttaatcagggacacaattgcaataagt 347  Q
    ||||||||||||||||||||||||||| ||||||||||||    
4902504 gtttaattttgatttaatcagggacactattgcaataagt 4902465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 419 - 500
Target Start/End: Complemental strand, 40382016 - 40381938
Alignment:
419 aatacacaaatactcaatgattgatcatagagttaactttacca-aaaagttattctcataacttcaacatagaattttcctt 500  Q
    |||||| ||||||| ||||||| |||||    ||||||| |||| |||||| ||||||||||||||| | |||||||||||||    
40382016 aatacataaatacttaatgattaatcat----ttaacttcaccagaaaagtcattctcataacttcaccgtagaattttcctt 40381938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 308 - 356
Target Start/End: Complemental strand, 8758474 - 8758426
Alignment:
308 gtttaattttgatttaatcagggacacaattgcaataagtaaagatata 356  Q
    |||||||||| ||||||||| |  ||||||||||||||||||| |||||    
8758474 gtttaattttaatttaatcaagagcacaattgcaataagtaaaaatata 8758426  T

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Target: scaffold0200 (Bit Score: 77; Significance: 2e-35; HSPs: 1)
Name: scaffold0200
Description:

Target: scaffold0200; HSP #1
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 313 - 499
Target Start/End: Original strand, 24686 - 24866
Alignment:
313 attttgatttaatcagggacacaattgcaataagtaaagatataatgacacaccttatgagcaaatgtcgtgtaatacaccatacaatctgacgcgacat 412  Q
    ||||||||||||||||||||||||||| |||||||||| ||||||| ||| |||||||| |||||||    | ||||||||||| ||||||||| |||||    
24686 attttgatttaatcagggacacaattggaataagtaaatatataataacataccttatgggcaaatgc---gcaatacaccatataatctgacgtgacat 24782  T
413 gaattaaatacacaaatactcaatgattgatcatagagttaactttacca-aaaagttattctcataacttcaacatagaattttcct 499  Q
    ||||||||||||||||| |||||||||||| |||    |||| || |||| |||| | |||||||||||||   ||||||||||||||    
24783 gaattaaatacacaaatgctcaatgattgaccat----ttaatttcaccagaaaaatcattctcataactttgccatagaattttcct 24866  T

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Target: scaffold0050 (Bit Score: 71; Significance: 7e-32; HSPs: 1)
Name: scaffold0050
Description:

Target: scaffold0050; HSP #1
Raw Score: 71; E-Value: 7e-32
Query Start/End: Original strand, 308 - 440
Target Start/End: Complemental strand, 5774 - 5645
Alignment:
308 gtttaattttgatttaatcagggacacaattgcaataagtaaagatataatgacacaccttatgagcaaatgtcgtgtaatacaccatacaatctgacgc 407  Q
    |||||||||||||||||| ||||||| |||||||||||| ||| |||||||||||||||||||  ||||||   ||| ||||||||||| ||||| ||      
5774 gtttaattttgatttaatgagggacataattgcaataaggaaatatataatgacacaccttataggcaaat---gtgcaatacaccatataatctaacat 5678  T
408 gacatgaattaaatacacaaatactcaatgatt 440  Q
    |||||||||||||||||||||| ||||||||||    
5677 gacatgaattaaatacacaaatgctcaatgatt 5645  T

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Target: scaffold0312 (Bit Score: 52; Significance: 2e-20; HSPs: 1)
Name: scaffold0312
Description:

Target: scaffold0312; HSP #1
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 308 - 500
Target Start/End: Original strand, 8995 - 9185
Alignment:
308 gtttaattttgatttaatcagggacacaattgcaataagtaaagatataatgacacaccttatgagcaaatgtcgtgtaatacaccatacaatctgacgc 407  Q
    |||||||||||||||||||| ||||||||||||||| |||||||||||||||  ||| | ||| || ||||   ||| |||| ||  || ||| ||||      
8995 gtttaattttgatttaatcaaggacacaattgcaattagtaaagatataatggaacatcgtataagtaaat---gtgcaataaactgtataatttgacat 9091  T
408 gacatgaattaaatacacaaatactcaatgattgatcatagagttaacttta-ccaaaaagttattctcataacttcaacatagaattttcctt 500  Q
    |||||  |||||||||||||||  |||||||||||||||     | |||| | | ||||||| ||||||||||||||| |||||||||||||||    
9092 gacatacattaaatacacaaatgttcaatgattgatcattctcatgacttcagcaaaaaagtcattctcataacttcatcatagaattttcctt 9185  T

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Target: scaffold0262 (Bit Score: 51; Significance: 6e-20; HSPs: 2)
Name: scaffold0262
Description:

Target: scaffold0262; HSP #1
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 309 - 371
Target Start/End: Original strand, 12031 - 12093
Alignment:
309 tttaattttgatttaatcagggacacaattgcaataagtaaagatataatgacacaccttatg 371  Q
    ||||||||||||||||||||| |||||||||||||||||||| ||||||||||||| ||||||    
12031 tttaattttgatttaatcaggaacacaattgcaataagtaaatatataatgacacatcttatg 12093  T

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Target: scaffold0262; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 450 - 498
Target Start/End: Original strand, 12137 - 12186
Alignment:
450 gttaactttacca-aaaagttattctcataacttcaacatagaattttcc 498  Q
    |||||||| |||| |||||| ||||||||||||||| |||||||||||||    
12137 gttaacttcaccagaaaagtcattctcataacttcatcatagaattttcc 12186  T

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Target: scaffold0001 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 29 - 62
Target Start/End: Complemental strand, 65395 - 65362
Alignment:
29 aaaggtatggttggtgttggaccagatgaatttt 62  Q
    ||||||||||||||||||||| ||||||||||||    
65395 aaaggtatggttggtgttggagcagatgaatttt 65362  T

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