View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3887_low_11 (Length: 243)
Name: NF3887_low_11
Description: NF3887
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3887_low_11 |
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Alignment Details
Target: chr8 (Bit Score: 217; Significance: 1e-119; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 1 - 229
Target Start/End: Complemental strand, 4681894 - 4681666
Alignment:
| Q |
1 |
ccaatttgcacattactttacaccagaagtgacactaagagtcatatactatattcatccctaaatacaggagctcgttgagtaaatcacggaaattaag |
100 |
Q |
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| T |
4681894 |
ccaatttgcacattactttacaccagaagtgacactaagagtcatatactatattcatccctaaatataggagctcgttgagtaaatcacgggaattaag |
4681795 |
T |
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| Q |
101 |
caagttgatagtaatatttacaaatttgttgatttttaatattgttttagaagtttagcctccaggagagagaattagtttatcttttcatcgtagtaat |
200 |
Q |
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| T |
4681794 |
caagttgatagtaatatttacaaatttgttgatttttaatattgttttagaagtttagcctccaggagagagaatcagtttatcttttcatcgtagtaat |
4681695 |
T |
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| Q |
201 |
tttatacagattgcagaaaaagatgtaag |
229 |
Q |
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| T |
4681694 |
tttatacagattgcagaaaaagatgtaag |
4681666 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 102 - 198
Target Start/End: Original strand, 2131471 - 2131564
Alignment:
| Q |
102 |
aagttgatagtaatatttacaaatttgttgatttttaatattgttttagaagtttagcctccaggagagagaattagtttatcttttcatcgtagta |
198 |
Q |
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| T |
2131471 |
aagttgatagtaatatt---aaatttgttgacaattgatattgctttacaaatttaccctttaggagagagaattagtttatgttttcatcatagta |
2131564 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 142 - 188
Target Start/End: Complemental strand, 26015722 - 26015676
Alignment:
| Q |
142 |
ttgttttagaagtttagcctccaggagagagaattagtttatctttt |
188 |
Q |
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| T |
26015722 |
ttgttttaaaagtttagtcttcaggagagagaattagtttatatttt |
26015676 |
T |
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