View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3887_low_12 (Length: 240)
Name: NF3887_low_12
Description: NF3887
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3887_low_12 |
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| [»] chr4 (4 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 141; Significance: 5e-74; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 141; E-Value: 5e-74
Query Start/End: Original strand, 61 - 240
Target Start/End: Original strand, 27944350 - 27944535
Alignment:
| Q |
61 |
aactaattccacgtgtcctgcatctatttgttatcactcatt----attatccctttatttc-gtaatcgtaaccactatataaa-actcactcagcacc |
154 |
Q |
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| T |
27944350 |
aactaattccacgtgtcatgcatctatttgttatcactcattcattattatccccttttttcagtaatcgtaaccactatataaagactcactcagcacc |
27944449 |
T |
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| Q |
155 |
caacttaacatatcataacataccatactacgatcaagccatgatgaatcgtaacaagactctcatgctgttctctgtccttttcc |
240 |
Q |
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| T |
27944450 |
caacttaacatatcataacataccatactacgatcaagccatgatgaatcgtaacaagactctcatgctgttctctgtccttttcc |
27944535 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 110; E-Value: 1e-55
Query Start/End: Original strand, 20 - 140
Target Start/End: Complemental strand, 27550620 - 27550502
Alignment:
| Q |
20 |
cagttttcgctaactgtcaactaaattcaaatataacagaaaactaattccacgtgtcctgcatctatttgttatcactcattattatccctttatttcg |
119 |
Q |
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| T |
27550620 |
cagttttcgctaactgtcaactaaattcaaatataacagaaaactaattccacgtgtcctgcatctatttgttatcactcattattatccctttatt--g |
27550523 |
T |
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| Q |
120 |
taatcgtaaccactatataaa |
140 |
Q |
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| T |
27550522 |
taatcgtaaccactatataaa |
27550502 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 132 - 240
Target Start/End: Complemental strand, 27550308 - 27550193
Alignment:
| Q |
132 |
ctatataaaactcactcagcacccaacttaacatatcataa-------cataccatactacgatcaagccatgatgaatcgtaacaagactctcatgctg |
224 |
Q |
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| T |
27550308 |
ctatataaaactcactcagcactcaacttaacatatcataagtcataacataccatactacgatcaagccatgatgaatcgtaacaagactctcatgctg |
27550209 |
T |
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| Q |
225 |
ttctctgtccttttcc |
240 |
Q |
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| T |
27550208 |
ttctctgtccttttcc |
27550193 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 119 - 192
Target Start/End: Original strand, 27435902 - 27435976
Alignment:
| Q |
119 |
gtaatcgtaaccactatataaa-actcactcagcacccaacttaacatatcataacataccatactacgatcaag |
192 |
Q |
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| T |
27435902 |
gtaatcgtaaccactatataaagactcactcagcacccaacttaacatatcataacataccatactaccatcaag |
27435976 |
T |
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