View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3887_low_14 (Length: 203)
Name: NF3887_low_14
Description: NF3887
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3887_low_14 |
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Alignment Details
Target: chr5 (Bit Score: 170; Significance: 2e-91; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 170; E-Value: 2e-91
Query Start/End: Original strand, 21 - 190
Target Start/End: Complemental strand, 11604123 - 11603954
Alignment:
| Q |
21 |
ggtcttctaagggaaattgttaattctaagtcaagagatcagaactttgcaacaatagttaaagaacaagatatggtatggcctgagcgagttcgacgtt |
120 |
Q |
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| T |
11604123 |
ggtcttctaagggaaattgttaattctaagtcaagagatcagaactttgcaacaatagttaaagaacaagatatggtatggcctgagcgagttcgacgtt |
11604024 |
T |
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| Q |
121 |
tatcggtcataaatccttcgcataatgtattacaacaaaatacgactacatttcatcttaggtctctgct |
190 |
Q |
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| T |
11604023 |
tatcggtcataaatccttcgcataatgtattacaacaaaatacgactacatttcatcttaggtctctgct |
11603954 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 75; E-Value: 9e-35
Query Start/End: Original strand, 24 - 190
Target Start/End: Original strand, 11641835 - 11642001
Alignment:
| Q |
24 |
cttctaagggaaattgttaattctaagtcaagagatcagaactttgcaacaatagttaaagaacaagatatggtatggcctgagcgagttcgacgtttat |
123 |
Q |
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| T |
11641835 |
cttctaagagaaattgttaatttcaagtcaagggatcagaactttgcaacagtagccaaagaacaagatatggtatggccggaacgagttcgtcgtttat |
11641934 |
T |
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| Q |
124 |
cggtcataaatccttcgcataatgtattacaacaaaatacgactacatttcatcttaggtctctgct |
190 |
Q |
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| T |
11641935 |
cggtcataaattcatcacataatgtacttaaacagaataagaccatattcaaacttaggtctctgct |
11642001 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 70; E-Value: 9e-32
Query Start/End: Original strand, 24 - 149
Target Start/End: Original strand, 11623329 - 11623454
Alignment:
| Q |
24 |
cttctaagggaaattgttaattctaagtcaagagatcagaactttgcaacaatagttaaagaacaagatatggtatggcctgagcgagttcgacgtttat |
123 |
Q |
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| T |
11623329 |
cttctaagagaaattgttaatttcaagtcaagggatcagaactttgcaacagtagccaaagaacaagatatggtatggccggaacgagttcgtcgtttat |
11623428 |
T |
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| Q |
124 |
cggtcataaatccttcgcataatgta |
149 |
Q |
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| T |
11623429 |
cagtcataaattcgtcacataatgta |
11623454 |
T |
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