View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3887_low_2 (Length: 435)
Name: NF3887_low_2
Description: NF3887
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3887_low_2 |
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Alignment Details
Target: chr5 (Bit Score: 404; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 404; E-Value: 0
Query Start/End: Original strand, 1 - 416
Target Start/End: Complemental strand, 35805911 - 35805496
Alignment:
| Q |
1 |
accaccatcaaaattgtgataaatataaatctccaccacgcaattgcatatgaatttattaatgtaaattaagaggctagtttgtaaattaagaggctag |
100 |
Q |
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| T |
35805911 |
accaccatcaaaattgtgataaatataaatctccaccacgcaattgcatatgaatttattaatgtaaattaagaggctagtttgtaaattaagaggctag |
35805812 |
T |
|
| Q |
101 |
ttagaattgaagttaaacaacaccacttgctggccttgtccacaacatgaagaccactcaaggtagccatgagggttgctttcaaatgtctcatgagata |
200 |
Q |
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| T |
35805811 |
ttagaattgaagtgaaacaacaccacttgttggccttgtccacaacatgaagaccactcaaggtagccatgagggttgctttcaaatgtctcatgagata |
35805712 |
T |
|
| Q |
201 |
tatgtactattcaccaccaccggtgcttacataattcccccaccactgccaccgtggacccttggcttccaccctcaatttcatcatttagggttttgat |
300 |
Q |
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| T |
35805711 |
tatgtacgattcaccaccaccggtgcttacataattcccccaccactgccaccgtggacccttggcttccaccctcaatttcatcatttagggttttgat |
35805612 |
T |
|
| Q |
301 |
ctaactatctgcaaagggaatcgatccatattagtattatgatagaattgacaaagttatttgatgtaacttaatgaatgatttggagaaaattgaaaca |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35805611 |
ctaactatctgcaaagggaatcgatccatattagtattatgatagaattgacaaagttatttgatgtaacttaatgaatgatttggagaaaattgaaaca |
35805512 |
T |
|
| Q |
401 |
atattcgggtgtagtg |
416 |
Q |
| |
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|||||||||||||||| |
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| T |
35805511 |
atattcgggtgtagtg |
35805496 |
T |
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