View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3887_low_6 (Length: 250)
Name: NF3887_low_6
Description: NF3887
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3887_low_6 |
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Alignment Details
Target: chr4 (Bit Score: 238; Significance: 1e-132; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 238; E-Value: 1e-132
Query Start/End: Original strand, 1 - 246
Target Start/End: Complemental strand, 225430 - 225185
Alignment:
| Q |
1 |
attatgcctcctcatggtggaatacttcacggaaccatgattggtatggcatgccccaccttctttacttttattgttacacttatatctttatgtcctt |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
225430 |
attatgcctcctcatggtggaatacttcacggaaccatgattggtatggcatgccccaccttctttacttttattgttacacttatatctttatgtcctt |
225331 |
T |
|
| Q |
101 |
ttggtttatctcgtaacaactcttatgtcgcgttttttatgagagaggttaatatggtttcccataatctagcaaaggcggccatatacaatgccacttc |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
225330 |
ttggtttatctcgtaacaactcttatgtcgcgttttttatgagagaggttaatatggtttcccataatctagtaaaggcggccatatacaatgccacttc |
225231 |
T |
|
| Q |
201 |
tcagctttattttgacatatcaaactgaattgatcctatgcttctc |
246 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
225230 |
tcagctttattttgacatatcaaactgaattgatcctatgattctc |
225185 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 113 - 219
Target Start/End: Complemental strand, 8746599 - 8746493
Alignment:
| Q |
113 |
gtaacaactcttatgtcgcgttttttatgagagaggttaatatggtttcccataatctagcaaaggcggccatatacaatgccacttctcagctttattt |
212 |
Q |
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| T |
8746599 |
gtaacaactcttatgtcgagttttctaggagagaggctaatatggttgctcatgaacttgcaaagacggccgtatataatgctagttctcttctttattt |
8746500 |
T |
|
| Q |
213 |
tgacata |
219 |
Q |
| |
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| ||||| |
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| T |
8746499 |
taacata |
8746493 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 11 - 67
Target Start/End: Complemental strand, 233070 - 233010
Alignment:
| Q |
11 |
ctcatggtggaatacttcacggaaccatgattggtatg----gcatgccccaccttcttta |
67 |
Q |
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||||| ||||||||||||||||||||||||||||| || | ||||||||||||||||| |
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| T |
233070 |
ctcatagtggaatacttcacggaaccatgattggtgtgtgtgggatgccccaccttcttta |
233010 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 113 - 219
Target Start/End: Complemental strand, 6955135 - 6955029
Alignment:
| Q |
113 |
gtaacaactcttatgtcgcgttttttatgagagaggttaatatggtttcccataatctagcaaaggcggccatatacaatgccacttctcagctttattt |
212 |
Q |
| |
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|||||||||||||||||| ||||| || ||||||| |||||||||| | ||| | || ||||||| ||| |||| ||||||| |||||| |||||||| |
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| T |
6955135 |
gtaacaactcttatgtcgagttttctaagagagagactaatatggttgctcatgaacttgcaaaggtggctgtatataatgccaattctcatctttattt |
6955036 |
T |
|
| Q |
213 |
tgacata |
219 |
Q |
| |
|
||||||| |
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|
| T |
6955035 |
tgacata |
6955029 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 35; Significance: 0.00000000009; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 113 - 219
Target Start/End: Original strand, 28695148 - 28695254
Alignment:
| Q |
113 |
gtaacaactcttatgtcgcgttttttatgagagaggttaatatggtttcccataatctagcaaaggcggccatatacaatgccacttctcagctttattt |
212 |
Q |
| |
|
|||||||||||||| ||| ||||| || |||| || |||||||||| | ||| | || ||||||||| ||||||| |||| || |||||| |||||| | |
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| T |
28695148 |
gtaacaactcttatttcgagttttctaggagacagtctaatatggttgctcatgaacttgcaaaggcgaccatatataatgtcagttctcatctttatat |
28695247 |
T |
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| Q |
213 |
tgacata |
219 |
Q |
| |
|
||||||| |
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|
| T |
28695248 |
tgacata |
28695254 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 111 - 220
Target Start/End: Complemental strand, 41289882 - 41289773
Alignment:
| Q |
111 |
tcgtaacaactcttatgtcgcgttttttatgagagaggttaatatggtttcccataatctagcaaaggcggccatatacaatgccacttctcagctttat |
210 |
Q |
| |
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|||||||||||||||||||| |||| || ||||| | ||||||| || | |||||||| ||||| ||| ||||||| |||| || |||||| || ||| |
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| T |
41289882 |
tcgtaacaactcttatgtcgatttttctaaaagagatgctaatatgattgctcataatcttgcaaaagcgaccatatataatgacaattctcatctctat |
41289783 |
T |
|
| Q |
211 |
tttgacatat |
220 |
Q |
| |
|
||||| |||| |
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|
| T |
41289782 |
tttgatatat |
41289773 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 114 - 219
Target Start/End: Original strand, 32011520 - 32011625
Alignment:
| Q |
114 |
taacaactcttatgtcgcgttttttatgagagaggttaatatggtttcccataatctagcaaaggcggccatatacaatgccacttctcagctttatttt |
213 |
Q |
| |
|
||||||||||||||||| ||||| |||||||||| |||||||||| |||||||| ||||| |||||||| | |||| | |||||| | |||||| |
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| T |
32011520 |
taacaactcttatgtcgagttttctatgagagagaataatatggttgttcataatcttccaaagacggccatagataatgtctattctcatatatatttt |
32011619 |
T |
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| Q |
214 |
gacata |
219 |
Q |
| |
|
|||||| |
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|
| T |
32011620 |
gacata |
32011625 |
T |
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