View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3887_low_8 (Length: 249)

Name: NF3887_low_8
Description: NF3887
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3887_low_8
NF3887_low_8
[»] chr8 (29 HSPs)
chr8 (1-241)||(4682199-4682439)
chr8 (105-235)||(4690082-4690212)
chr8 (105-234)||(4775244-4775373)
chr8 (105-241)||(4727302-4727438)
chr8 (133-240)||(10448507-10448614)
chr8 (105-241)||(4704616-4704752)
chr8 (105-241)||(4737881-4738017)
chr8 (108-235)||(4922229-4922355)
chr8 (149-240)||(4888952-4889043)
chr8 (105-241)||(4716723-4716858)
chr8 (104-240)||(4874223-4874359)
chr8 (105-241)||(4899954-4900089)
chr8 (1-68)||(4997198-4997265)
chr8 (133-235)||(4912469-4912571)
chr8 (105-235)||(21438263-21438393)
chr8 (105-241)||(4921943-4922078)
chr8 (1-62)||(4889266-4889327)
chr8 (5-61)||(4689780-4689836)
chr8 (1-69)||(4737546-4737614)
chr8 (1-69)||(4900341-4900409)
chr8 (8-69)||(10448136-10448197)
chr8 (1-69)||(4704298-4704366)
chr8 (5-69)||(4716322-4716386)
chr8 (1-69)||(4726989-4727057)
chr8 (1-61)||(4775823-4775883)
chr8 (149-222)||(4997327-4997400)
chr8 (13-69)||(4923159-4923215)
chr8 (1-69)||(4912747-4912815)
chr8 (1-59)||(21438697-21438755)


Alignment Details
Target: chr8 (Bit Score: 229; Significance: 1e-126; HSPs: 29)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 1 - 241
Target Start/End: Original strand, 4682199 - 4682439
Alignment:
1 atatcatcttccatatcaaagctcgctatgttacagtacttgtgagttcctaatctcatttggttaaatgataaaaccaaatctaaattattttctttca 100  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
4682199 atatcatcttccatatcaaagctcactatgttacagtacttgtgagttcctaatctcatttggttaaatgataaaaccaaatctaaattattttctttca 4682298  T
101 gggatttattggagattcaaaattgtaactcagcatttaaattgctttctttcagggatttatcaaacaatagcttaaacggttctttacctgattttct 200  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
4682299 gggatttattagagattcaaaattgtaactcagcatttaaattgctttctttcagggatttatcaaacaatagcttaaatggttctttacctgattttct 4682398  T
201 gatgcaactgcgttcactaaaagtcttgtaagtcctatgtt 241  Q
    |||||||||||||||||||||||||||||||||||||||||    
4682399 gatgcaactgcgttcactaaaagtcttgtaagtcctatgtt 4682439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 105 - 235
Target Start/End: Original strand, 4690082 - 4690212
Alignment:
105 tttattggagattcaaaattgtaactcagcatttaaattgctttctttcagggatttatcaaacaatagcttaaacggttctttacctgattttctgatg 204  Q
    ||||||||||||||||||||||||||| | ||||| |||| |||||||||||||||||||||||||||||||||||||| || ||||||||||||||||     
4690082 tttattggagattcaaaattgtaactctgaatttacattgttttctttcagggatttatcaaacaatagcttaaacggtcctatacctgattttctgatt 4690181  T
205 caactgcgttcactaaaagtcttgtaagtcc 235  Q
    |||||||| ||||||||||||||||||||||    
4690182 caactgcggtcactaaaagtcttgtaagtcc 4690212  T

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Target: chr8; HSP #3
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 105 - 234
Target Start/End: Complemental strand, 4775373 - 4775244
Alignment:
105 tttattggagattcaaaattgtaactcagcatttaaattgctttctttcagggatttatcaaacaatagcttaaacggttctttacctgattttctgatg 204  Q
    |||||||| |||||||| |||||||||  ||||||||||| |||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||     
4775373 tttattggggattcaaatttgtaactctacatttaaattgttttctttcagggatttgtcaaacaatagcttaaacggtcctttacctgattttctgata 4775274  T
205 caactgcgttcactaaaagtcttgtaagtc 234  Q
    ||||| || |||||| ||||||||||||||    
4775273 caacttcggtcactacaagtcttgtaagtc 4775244  T

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Target: chr8; HSP #4
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 105 - 241
Target Start/End: Original strand, 4727302 - 4727438
Alignment:
105 tttattggagattcaaaattgtaactcagcatttaaattgctttctttcagggatttatcaaacaatagcttaaacggttctttacctgattttctgatg 204  Q
    ||||||||  ||||||||||||||| | | |||||||||| ||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||    
4727302 tttattggcaattcaaaattgtaacactgtatttaaattgttttctttcagggatttatcaaacaatagcttgaacggtcctttacctgattttctgatg 4727401  T
205 caactgcgttcactaaaagtcttgtaagtcctatgtt 241  Q
    || ||| | ||||||||| |||||||||||| |||||    
4727402 cagctgaggtcactaaaaatcttgtaagtcccatgtt 4727438  T

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Target: chr8; HSP #5
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 133 - 240
Target Start/End: Original strand, 10448507 - 10448614
Alignment:
133 gcatttaaattgctttctttcagggatttatcaaacaatagcttaaacggttctttacctgattttctgatgcaactgcgttcactaaaagtcttgtaag 232  Q
    |||| ||||||| || ||||||||||||||||||||||||| ||||| ||||| |||||||||||||||||||||||||| |||||||||||||||||||    
10448507 gcatataaattgtttcctttcagggatttatcaaacaatagtttaaagggttccttacctgattttctgatgcaactgcggtcactaaaagtcttgtaag 10448606  T
233 tcctatgt 240  Q
    ||||||||    
10448607 tcctatgt 10448614  T

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Target: chr8; HSP #6
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 105 - 241
Target Start/End: Original strand, 4704616 - 4704752
Alignment:
105 tttattggagattcaaaattgtaactcagcatttaaattgctttctttcagggatttatcaaacaatagcttaaacggttctttacctgattttctgatg 204  Q
    |||||||| |||||||||||||||||| | ||||   || ||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||      
4704616 tttattggggattcaaaattgtaactccgtatttttttttctttctttcagggatttatcaaacaatagcttaaacggccctttacctgattttctgaca 4704715  T
205 caactgcgttcactaaaagtcttgtaagtcctatgtt 241  Q
    |||||||| || |||||||||||||| |||| |||||    
4704716 caactgcggtctctaaaagtcttgtatgtcccatgtt 4704752  T

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Target: chr8; HSP #7
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 105 - 241
Target Start/End: Original strand, 4737881 - 4738017
Alignment:
105 tttattggagattcaaaattgtaactcagcatttaaattgctttctttcagggatttatcaaacaatagcttaaacggttctttacctgattttctgatg 204  Q
    |||||||| | |||||||||||||||| |  ||||||||| || |||||||||||||||||||||||||||| || ||| ||||||||||||||||||||    
4737881 tttattgggggttcaaaattgtaactctgtgtttaaattgtttactttcagggatttatcaaacaatagcttgaatggtcctttacctgattttctgatg 4737980  T
205 caactgcgttcactaaaagtcttgtaagtcctatgtt 241  Q
    || ||| | ||||||||| | |||||||||| |||||    
4737981 cagctgaggtcactaaaaatattgtaagtcccatgtt 4738017  T

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Target: chr8; HSP #8
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 108 - 235
Target Start/End: Complemental strand, 4922355 - 4922229
Alignment:
108 attggagattcaaaattgtaactcagcatttaaattgctttctttcagggatttatcaaacaatagcttaaacggttctttacctgattttctgatgcaa 207  Q
    |||| ||||||||||||||||||| |||| ||||||| ||  |||||||||||||||||||||||||||| | || || ||||||||||||||||| |||    
4922355 attgaagattcaaaattgtaactctgcatataaattg-ttcatttcagggatttatcaaacaatagcttacagggatccttacctgattttctgatacaa 4922257  T
208 ctgcgttcactaaaagtcttgtaagtcc 235  Q
    ||||  ||||||||||||||||||||||    
4922256 ctgcagtcactaaaagtcttgtaagtcc 4922229  T

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Target: chr8; HSP #9
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 149 - 240
Target Start/End: Complemental strand, 4889043 - 4888952
Alignment:
149 ctttcagggatttatcaaacaatagcttaaacggttctttacctgattttctgatgcaactgcgttcactaaaagtcttgtaagtcctatgt 240  Q
    |||||||||||||||||||||||||||||| |||| | |||||||||||||||||||||||||| ||| |||||||||||||||||| ||||    
4889043 ctttcagggatttatcaaacaatagcttaagcggtcccttacctgattttctgatgcaactgcgatcattaaaagtcttgtaagtcccatgt 4888952  T

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Target: chr8; HSP #10
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 105 - 241
Target Start/End: Original strand, 4716723 - 4716858
Alignment:
105 tttattggagattcaaaattgtaactcagcatttaaattgctttctttcagggatttatcaaacaatagcttaaacggttctttacctgattttctgatg 204  Q
    |||||||| | |||| |||||||||||   | |||||||  |||||||||||||||||||||||||||||||||||||  | ||||||||||||||||||    
4716723 tttattgggggttcacaattgtaactctttaattaaattt-tttctttcagggatttatcaaacaatagcttaaacggcccattacctgattttctgatg 4716821  T
205 caactgcgttcactaaaagtcttgtaagtcctatgtt 241  Q
    |||||||| || || ||||||||||| |||| |||||    
4716822 caactgcggtctctgaaagtcttgtatgtcccatgtt 4716858  T

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Target: chr8; HSP #11
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 104 - 240
Target Start/End: Complemental strand, 4874359 - 4874223
Alignment:
104 atttattggagattcaaaattgtaactcagcatttaaattgctttctttcagggatttatcaaacaatagcttaaacggttctttacctgattttctgat 203  Q
    ||||| || ||||||||||||||||||  ||||||  |||| || ||||||||||||||||||||||||| ||||||||| | |||||||| | | ||||    
4874359 atttaatgtagattcaaaattgtaactatgcatttccattgtttcctttcagggatttatcaaacaatagtttaaacggtcccttacctgactctttgat 4874260  T
204 gcaactgcgttcactaaaagtcttgtaagtcctatgt 240  Q
    ||||||||  ||| |||||||||||||||||| ||||    
4874259 gcaactgcaatcattaaaagtcttgtaagtcccatgt 4874223  T

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Target: chr8; HSP #12
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 105 - 241
Target Start/End: Complemental strand, 4900089 - 4899954
Alignment:
105 tttattggagattcaaaattgtaactcagcatttaaattgctttctttcagggatttatcaaacaatagcttaaacggttctttacctgattttctgatg 204  Q
    ||||||||||||| |||||| |||| | |||||||||||   | |||||||  ||||||| |||||||||||||||||| | | ||||||||||||||||    
4900089 tttattggagatttaaaattttaacactgcatttaaattctatcctttcagaaatttatctaacaatagcttaaacggtccat-acctgattttctgatg 4899991  T
205 caactgcgttcactaaaagtcttgtaagtcctatgtt 241  Q
    ||||| || || ||||||||||||||||||| |||||    
4899990 caactacgatcgctaaaagtcttgtaagtcccatgtt 4899954  T

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Target: chr8; HSP #13
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 1 - 68
Target Start/End: Original strand, 4997198 - 4997265
Alignment:
1 atatcatcttccatatcaaagctcgctatgttacagtacttgtgagttcctaatctcatttggttaaa 68  Q
    ||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
4997198 atatcatcttctatatcaaagctctctatgttacagtacttgtgagttcctaatctcatttggttaaa 4997265  T

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Target: chr8; HSP #14
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 133 - 235
Target Start/End: Complemental strand, 4912571 - 4912469
Alignment:
133 gcatttaaattgctttctttcagggatttatcaaacaatagcttaaacggttctttacctgattttctgatgcaactgcgttcactaaaagtcttgtaag 232  Q
    |||||||||||  || ||||||| |||||||||||||||||| |||| ||| | |||||||||||||||| |||| |||| |||||||||||||||||||    
4912571 gcatttaaattctttcctttcagagatttatcaaacaatagcctaaatggtcccttacctgattttctgacgcaaatgcgatcactaaaagtcttgtaag 4912472  T
233 tcc 235  Q
    |||    
4912471 tcc 4912469  T

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Target: chr8; HSP #15
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 105 - 235
Target Start/End: Complemental strand, 21438393 - 21438263
Alignment:
105 tttattggagattcaaaattgtaactcagcatttaaattgctttc-tttcagggatttatcaaacaatagcttaaacggttctttacctgattttctgat 203  Q
    |||||| ||||||||||||| |||||  ||||||||||| || || |||||| ||||||||||||||||| || |||||| | ||||||||||||||| |    
21438393 tttattagagattcaaaattttaactatgcatttaaatt-ctgtcatttcagagatttatcaaacaatagtttgaacggtcccttacctgattttctggt 21438295  T
204 gcaactgcgttcactaaaagtcttgtaagtcc 235  Q
    ||||||||  |||||  |||||||||||||||    
21438294 gcaactgcaatcactgcaagtcttgtaagtcc 21438263  T

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Target: chr8; HSP #16
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 105 - 241
Target Start/End: Complemental strand, 4922078 - 4921943
Alignment:
105 tttattggagattcaaaattgtaactcagcatttaaattgctttctttcagggatttatcaaacaatagcttaaacggttctttacctgattttctgatg 204  Q
    |||||||| | ||||||||||||| || |||| ||||||| ||  ||||||||| |||||||||||| | ||||||||| ||||||||||||| ||||      
4922078 tttattggggtttcaaaattgtaattctgcatataaattg-ttcatttcagggacttatcaaacaatggtttaaacggtcctttacctgatttcctgaca 4921980  T
205 caactgcgttcactaaaagtcttgtaagtcctatgtt 241  Q
    |||||||  |||||||| || |||||||||| |||||    
4921979 caactgccatcactaaatgtattgtaagtcccatgtt 4921943  T

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Target: chr8; HSP #17
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 1 - 62
Target Start/End: Complemental strand, 4889327 - 4889266
Alignment:
1 atatcatcttccatatcaaagctcgctatgttacagtacttgtgagttcctaatctcatttg 62  Q
    |||||||| ||||||||||||||| |||||||||| ||||||||||||||||||||||||||    
4889327 atatcatcatccatatcaaagctcactatgttacaatacttgtgagttcctaatctcatttg 4889266  T

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Target: chr8; HSP #18
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 5 - 61
Target Start/End: Original strand, 4689780 - 4689836
Alignment:
5 catcttccatatcaaagctcgctatgttacagtacttgtgagttcctaatctcattt 61  Q
    |||||| |||||||||||||||||||||| |||||||||||||||||||||||||||    
4689780 catctttcatatcaaagctcgctatgttagagtacttgtgagttcctaatctcattt 4689836  T

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Target: chr8; HSP #19
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 1 - 69
Target Start/End: Original strand, 4737546 - 4737614
Alignment:
1 atatcatcttccatatcaaagctcgctatgttacagtacttgtgagttcctaatctcatttggttaaat 69  Q
    |||||||||||||||||||||||| ||||||| || ||||||||||||||||||| |||||| ||||||    
4737546 atatcatcttccatatcaaagctcactatgttgcaatacttgtgagttcctaatcccatttgattaaat 4737614  T

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Target: chr8; HSP #20
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 1 - 69
Target Start/End: Complemental strand, 4900409 - 4900341
Alignment:
1 atatcatcttccatatcaaagctcgctatgttacagtacttgtgagttcctaatctcatttggttaaat 69  Q
    ||||||||||||||||| |||||| |||||||||||||||||| ||||||||||||||||  |||||||    
4900409 atatcatcttccatatcgaagctcactatgttacagtacttgtaagttcctaatctcattctgttaaat 4900341  T

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Target: chr8; HSP #21
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 8 - 69
Target Start/End: Original strand, 10448136 - 10448197
Alignment:
8 cttccatatcaaagctcgctatgttacagtacttgtgagttcctaatctcatttggttaaat 69  Q
    ||||||||||||||||| ||||||||||||| ||||||||||||||||||||| | ||||||    
10448136 cttccatatcaaagctcactatgttacagtatttgtgagttcctaatctcattggattaaat 10448197  T

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Target: chr8; HSP #22
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 1 - 69
Target Start/End: Original strand, 4704298 - 4704366
Alignment:
1 atatcatcttccatatcaaagctcgctatgttacagtacttgtgagttcctaatctcatttggttaaat 69  Q
    |||||||||||||||| |||| || | || |||||||||||||||||||||||||||||||| ||||||    
4704298 atatcatcttccatattaaagttcaccatattacagtacttgtgagttcctaatctcatttgattaaat 4704366  T

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Target: chr8; HSP #23
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 5 - 69
Target Start/End: Original strand, 4716322 - 4716386
Alignment:
5 catcttccatatcaaagctcgctatgttacagtacttgtgagttcctaatctcatttggttaaat 69  Q
    |||||||||| ||||||||| |||||||| |||||||||||||| ||||||||||||| ||||||    
4716322 catcttccatctcaaagctcactatgttagagtacttgtgagtttctaatctcatttgattaaat 4716386  T

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Target: chr8; HSP #24
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 1 - 69
Target Start/End: Original strand, 4726989 - 4727057
Alignment:
1 atatcatcttccatatcaaagctcgctatgttacagtacttgtgagttcctaatctcatttggttaaat 69  Q
    ||||||||| |||||||||||||| ||||||| || ||||||||||||||||||| |||||| ||||||    
4726989 atatcatctgccatatcaaagctcactatgttgcaatacttgtgagttcctaatcccatttgattaaat 4727057  T

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Target: chr8; HSP #25
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 1 - 61
Target Start/End: Complemental strand, 4775883 - 4775823
Alignment:
1 atatcatcttccatatcaaagctcgctatgttacagtacttgtgagttcctaatctcattt 61  Q
    |||||||||||||||||||||||  |||||||||| |||||||||||||||||||| ||||    
4775883 atatcatcttccatatcaaagctaactatgttacaatacttgtgagttcctaatcttattt 4775823  T

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Target: chr8; HSP #26
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 149 - 222
Target Start/End: Original strand, 4997327 - 4997400
Alignment:
149 ctttcagggatttatcaaacaatagcttaaacggttctttacctgattttctgatgcaactgcgttcactaaaa 222  Q
    ||||||||||||||||||| |||||||||| |||  | ||||||||||||||||  |||||||| |||||||||    
4997327 ctttcagggatttatcaaataatagcttaagcggccccttacctgattttctgacacaactgcggtcactaaaa 4997400  T

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Target: chr8; HSP #27
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 13 - 69
Target Start/End: Complemental strand, 4923215 - 4923159
Alignment:
13 atatcaaagctcgctatgttacagtacttgtgagttcctaatctcatttggttaaat 69  Q
    |||||||||||| ||||||| |||||||||||||| |||||| ||||||||||||||    
4923215 atatcaaagctcactatgttgcagtacttgtgagtacctaatttcatttggttaaat 4923159  T

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Target: chr8; HSP #28
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 69
Target Start/End: Complemental strand, 4912815 - 4912747
Alignment:
1 atatcatcttccatatcaaagctcgctatgttacagtacttgtgagttcctaatctcatttggttaaat 69  Q
    ||||||| |||||||||||||||| | || ||||| ||||||||||||||| ||||||||  |||||||    
4912815 atatcatattccatatcaaagctcacaatattacaatacttgtgagttcctcatctcattatgttaaat 4912747  T

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Target: chr8; HSP #29
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 59
Target Start/End: Complemental strand, 21438755 - 21438697
Alignment:
1 atatcatcttccatatcaaagctcgctatgttacagtacttgtgagttcctaatctcat 59  Q
    |||||||||| ||| ||||||||| | ||||||||  |||||||||||||| |||||||    
21438755 atatcatcttacatctcaaagctcacaatgttacaaaacttgtgagttccttatctcat 21438697  T

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