View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3887_low_9 (Length: 248)
Name: NF3887_low_9
Description: NF3887
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3887_low_9 |
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Alignment Details
Target: chr2 (Bit Score: 215; Significance: 1e-118; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 1 - 230
Target Start/End: Original strand, 4643733 - 4643963
Alignment:
| Q |
1 |
atgatcaagctggatgtttgaaatggttaaacaagttttttgaataccataatgagctgcttcaaaccgaactacataagcttcgagtgctgtatccttt |
100 |
Q |
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| T |
4643733 |
atgatcaagctggatgtttgaaatggttaaacaagttttttgaataccataatgagctgcttcaaaccgaactacataagcttcgagtgctgtatccttt |
4643832 |
T |
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| Q |
101 |
tactaatatcatctatgcagattatttcaatgctgcattgcagttgtacaaatccccagaacaatatggtagtctgcttgctaatcct-tttacttttta |
199 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
4643833 |
tactaatatcatctatgcagattatttcaatgctgcattgcagttgtacaaatctccagaacaatatggtagtctgcttgctaatcctctttacttttta |
4643932 |
T |
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| Q |
200 |
tgtcatatcaatgtatttgtgctgcaagtaa |
230 |
Q |
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|||||||||||||| |||||||||||||||| |
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| T |
4643933 |
tgtcatatcaatgtgtttgtgctgcaagtaa |
4643963 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 97; E-Value: 9e-48
Query Start/End: Original strand, 1 - 163
Target Start/End: Original strand, 4661618 - 4661784
Alignment:
| Q |
1 |
atgatcaagctggatgtttgaaatggttaaacaagttttttgaataccataatgagctgcttcaaaccgaactacataagcttcgagtgctgtatccttt |
100 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||| ||||||| ||| ||||||||| |||||| ||| |
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| T |
4661618 |
atgatcaagctggatgtttgacatggttaaacaagttttttgaatatcataatgagctgcttcaaatcgaactaaataggcttcgagtcttgtatcattt |
4661717 |
T |
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| Q |
101 |
tactaatatcatctatgcagat--tatttca--atgctgcattgcagttgtacaaatccccagaaca |
163 |
Q |
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| T |
4661718 |
tgctaatatcatctatgcagattatatttcaatatgctgcattgcagtgttacaaatctccagaaca |
4661784 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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