View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3888_high_10 (Length: 255)
Name: NF3888_high_10
Description: NF3888
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3888_high_10 |
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Alignment Details
Target: chr5 (Bit Score: 246; Significance: 1e-136; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 1 - 246
Target Start/End: Complemental strand, 41646035 - 41645790
Alignment:
| Q |
1 |
cagctccaatgtgcatatttttcgtacctgcctccaatactctccatagggtgaaaaggcaatgtcagtgcaaccataagaaacaatttctagaccaaga |
100 |
Q |
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| T |
41646035 |
cagctccaatgtgcatatttttcgtacctgcctccaatactctccatagggtgaaaaggcaatgtcagtgcaaccataagaaacaatttctagaccaaga |
41645936 |
T |
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| Q |
101 |
gaacgaggtctttgtggaaatatgacttcatttgttttcaacacctcttgggcaatttctttggaagagaccactatgactgaagtctctccaagttgta |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41645935 |
gaacgaggtctttgtggaaatatgacttcatttgttttcaacacctcttgggcaatttctttggaagagaccactatgactgaagtctctccaagttgta |
41645836 |
T |
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| Q |
201 |
ggtgcatgagagggccatatttttgggacaattctctcattctgtg |
246 |
Q |
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| T |
41645835 |
ggtgcatgagagggccatatttttgggacaattctctcattctgtg |
41645790 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 1 - 246
Target Start/End: Complemental strand, 41653237 - 41652992
Alignment:
| Q |
1 |
cagctccaatgtgcatatttttcgtacctgcctccaatactctccatagggtgaaaaggcaatgtcagtgcaaccataagaaacaatttctagaccaaga |
100 |
Q |
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||||||||||||||||||||| |||| |||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||| ||||||| |
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| T |
41653237 |
cagctccaatgtgcatattttgcgtagctgcctccaatactctccatagggggaaaaagcaatgtcagtgcaaccataagaaacaatttctaaaccaaga |
41653138 |
T |
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| Q |
101 |
gaacgaggtctttgtggaaatatgacttcatttgttttcaacacctcttgggcaatttctttggaagagaccactatgactgaagtctctccaagttgta |
200 |
Q |
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| T |
41653137 |
gagcgtggtctttgcggaaatgtgatttcatttgttttcaacacctctttggcaatttcttttgaagagaccactatggctgaagtctctccaagtttta |
41653038 |
T |
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| Q |
201 |
ggtgcatgagagggccatatttttgggacaattctctcattctgtg |
246 |
Q |
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| T |
41653037 |
ggtgcatgagaggaccatatttttgggacaattctctcatgctgtg |
41652992 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 4 - 243
Target Start/End: Original strand, 41623774 - 41624012
Alignment:
| Q |
4 |
ctccaatgtgcatatttttcgtacctgcctccaatactctccatagggtgaaaaggcaatgtcagtgcaaccataagaaacaatttctagaccaagagaa |
103 |
Q |
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||||||||||||||||||| || | ||||||||| |||||| ||||||||| |||| ||||| |||||| | | ||||||| ||||||| || |
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| T |
41623774 |
ctccaatgtgcatattttttttatattcctccaatagtctccagcaggtgaaaagaaaatgctagtgctaccataggctataatttctgcaccaagaaaa |
41623873 |
T |
|
| Q |
104 |
cgaggtctttgtggaaatatgacttcatttgttttcaacacctcttgggcaatttctttggaagagaccactatgactgaagtctctccaagttgtaggt |
203 |
Q |
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| T |
41623874 |
cgag-tctttgaccaaatgtgccatcatttgttttcatcaccactttggcaatttctttagaagagaccactatagttgaagtttctccaagttttaggt |
41623972 |
T |
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| Q |
204 |
gcatgagagggccatatttttgggacaattctctcattct |
243 |
Q |
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| T |
41623973 |
gcatgagagggccatatttttgggacaattctctcattct |
41624012 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 120; Significance: 2e-61; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 8 - 243
Target Start/End: Complemental strand, 2432048 - 2431813
Alignment:
| Q |
8 |
aatgtgcatatttttcgtacctgcctccaatactctccatagggtgaaaaggcaatgtcagtgcaaccataagaaacaatttctagaccaagagaacgag |
107 |
Q |
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|||||||||||||||| || |||||||||||| |||||||||| || |||| |||||| |||| |||||||||||||||||| ||||||| |||||| |
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| T |
2432048 |
aatgtgcatatttttcttagctgcctccaataatctccataggatgcaaagacaatgttggtgctaccataagaaacaatttcagcaccaagaaaacgag |
2431949 |
T |
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| Q |
108 |
gtctttgtggaaatatgacttcatttgttttcaacacctcttgggcaatttctttggaagagaccactatgactgaagtctctccaagttgtaggtgcat |
207 |
Q |
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||||||| | |||| | || ||||| ||||| |||| ||||| |||||||||||| ||||| ||||||||| |||||||||||||||||||||||||||| |
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| T |
2431948 |
gtctttgagaaaatgtaacatcattggttttgaacaactctttggcaatttctttagaagaaaccactatggctgaagtctctccaagttgtaggtgcat |
2431849 |
T |
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| Q |
208 |
gagagggccatatttttgggacaattctctcattct |
243 |
Q |
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|| ||| ||||| ||| ||||||||||||||||||| |
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| T |
2431848 |
gataggaccatactttagggacaattctctcattct |
2431813 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 83; Significance: 2e-39; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 1 - 239
Target Start/End: Original strand, 12439431 - 12439669
Alignment:
| Q |
1 |
cagctccaatgtgcatatttttcgtacctgcctccaatactctccatagggtgaaaaggcaatgtcagtgcaaccataagaaacaatttctagaccaaga |
100 |
Q |
| |
|
||||||||||||||| ||||||| || || | ||||||| ||||||||||||||||| ||| || ||||||||||||| ||||||||| ||||| | |
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| T |
12439431 |
cagctccaatgtgcagatttttcttagctccttccaatagtctccatagggtgaaaacacaaggttggtgcaaccataagttacaatttctgcaccaata |
12439530 |
T |
|
| Q |
101 |
gaacgaggtctttgtggaaatatgacttcatttgttttcaacacctcttgggcaatttctttggaagagaccactatgactgaagtctctccaagttgta |
200 |
Q |
| |
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| ||| |||||| | |||| ||| ||||| ||||| | ||||||||| ||||||||||| ||||| | |||||| |||||| || |||||||||| |
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| T |
12439531 |
aagcgatatctttgagcaaatttgagatcattggttttgagcacctcttgtgcaatttctttagaagaaataactatggttgaagtttcaccaagttgta |
12439630 |
T |
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| Q |
201 |
ggtgcatgagagggccatatttttgggacaattctctca |
239 |
Q |
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||||||||| |||||||||||||| |||||||||||||| |
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| T |
12439631 |
ggtgcatgatagggccatattttttggacaattctctca |
12439669 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 34; Significance: 0.0000000004; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 10 - 63
Target Start/End: Original strand, 12638131 - 12638184
Alignment:
| Q |
10 |
tgtgcatatttttcgtacctgcctccaatactctccatagggtgaaaaggcaat |
63 |
Q |
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||||||||||||||||| |||||||||||| | |||||| |||||||| ||||| |
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| T |
12638131 |
tgtgcatatttttcgtagctgcctccaataatttccataaggtgaaaatgcaat |
12638184 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 2 - 63
Target Start/End: Original strand, 12611123 - 12611184
Alignment:
| Q |
2 |
agctccaatgtgcatatttttcgtacctgcctccaatactctccatagggtgaaaaggcaat |
63 |
Q |
| |
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||||||| ||||||||||||||||| || |||||||| | |||||| |||||||| ||||| |
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| T |
12611123 |
agctccattgtgcatatttttcgtagttgtctccaataatttccataaggtgaaaaagcaat |
12611184 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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