View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3888_high_12 (Length: 244)
Name: NF3888_high_12
Description: NF3888
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3888_high_12 |
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| [»] chr4 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 150; Significance: 2e-79; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 19 - 244
Target Start/End: Original strand, 40340640 - 40340859
Alignment:
| Q |
19 |
atatcgataattataaacaaagaattttaaaattattgtttgtaatttataacattaacgcaataaaataatcagatagacgaaaattcgatgaaaataa |
118 |
Q |
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| T |
40340640 |
atatcgataattataaacagaaattttaaaaattaatgtttgtaatttataacattaacgcaataaaataatcagttagacgaaaattcgatgaaaataa |
40340739 |
T |
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| Q |
119 |
attctttagacaaattacatcaaacaaaaagagagaagaaggtgccgtgataaggtgggactgcctgcaaggatcactcgaataaaatctt----caaga |
214 |
Q |
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| T |
40340740 |
attctttagacaaattacatcaaacaaaaagagagaagaaggtgccgtgataaggtgg----------aaggatcactcaaataaaatctttatacaaga |
40340829 |
T |
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| Q |
215 |
aacagaaaatgggtacaacccattccaatt |
244 |
Q |
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| T |
40340830 |
aacagaaaatgggtacaacccattccaatt |
40340859 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 47 - 86
Target Start/End: Original strand, 30567581 - 30567621
Alignment:
| Q |
47 |
aaaattattgtttgtaatttata-acattaacgcaataaaa |
86 |
Q |
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|||| |||||||||||||||||| ||||||||||||||||| |
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| T |
30567581 |
aaaactattgtttgtaatttatatacattaacgcaataaaa |
30567621 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 47 - 86
Target Start/End: Complemental strand, 7123665 - 7123625
Alignment:
| Q |
47 |
aaaattattgtttgtaatttata-acattaacgcaataaaa |
86 |
Q |
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| T |
7123665 |
aaaattattgttcgtaatttatacacattaacgcaataaaa |
7123625 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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