View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3888_high_2 (Length: 415)
Name: NF3888_high_2
Description: NF3888
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3888_high_2 |
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Alignment Details
Target: chr4 (Bit Score: 357; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 357; E-Value: 0
Query Start/End: Original strand, 6 - 397
Target Start/End: Complemental strand, 51391328 - 51390936
Alignment:
| Q |
6 |
gagtgagatgaaacccaaaatccttcttcatcgtcatacccttcttctccaaacccagaacccagcaacacctaagataagacaccaacaactatattgt |
105 |
Q |
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| T |
51391328 |
gagtgagatgaaacccaaaatccttcttcatcatcataccctttttctccaaacccagaacccagcaacacctaagataagacaccaacaactatattgt |
51391229 |
T |
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| Q |
106 |
tcaaataaccgtatttgaagtaagcagttcaaaacaaatcaatccaagacatccccccattccattacatatttacggtcaaggttacatctgaacaagc |
205 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
51391228 |
tcaaataaccgtatttgaagtaagcaattcaaaacaaatcaatccaagacatccccccattccattacatatttacagtcaaggttacatctgaacaagc |
51391129 |
T |
|
| Q |
206 |
actctacatgtatgcttggggattcgaacatcacgatgaatcagaagctacacattagagctactgaaaattacgtcggggtagctcaagattcacagca |
305 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
51391128 |
actctacatgtatgcttggggattcgaacatcactatgaatcagaagctacacattagagctactgaaaattacgtcggggtagctcaagattcacagta |
51391029 |
T |
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| Q |
306 |
gcagttgtcaactgctcaatcgcaacaaaatttcagataaaatttaacaaacgacaatattaatac-aacattttaacgaaaatcaatgtgga |
397 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
51391028 |
gcagttgtcaactgctcaatcgcaacaaaatttcagataaaatttgacaaacgacaatattaatacaaacattttaacgaaaatcaatgtgga |
51390936 |
T |
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