View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3888_high_3 (Length: 396)
Name: NF3888_high_3
Description: NF3888
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3888_high_3 |
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Alignment Details
Target: chr4 (Bit Score: 308; Significance: 1e-173; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 308; E-Value: 1e-173
Query Start/End: Original strand, 18 - 379
Target Start/End: Complemental strand, 22023049 - 22022684
Alignment:
| Q |
18 |
ataatattgataacagaatatatgatctgcaatttctaaattctagctag----tatgaataatgcaacaatgtgcgtagttgtcaaaaaataaatgcaa |
113 |
Q |
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| T |
22023049 |
ataatattgataacagaatatatgatctgcaatttctaaattctagctagctagtatgaataatgcaacaatatgcgtagttgtcaaaaaataaatgcaa |
22022950 |
T |
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| Q |
114 |
ctatgcgtattttaccattgttacatatcatgtcaaacaatatgaataactatgcacaagaagatcacaaaatacaacactataaaattgaagggttaat |
213 |
Q |
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||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22022949 |
ctatgcgtacttcaccattgttacatatcatgtcaaacaatatgaataactatgcacaagaagatcacaaaatacaacactataaaattgaagggttaat |
22022850 |
T |
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| Q |
214 |
ttaattatcatattttttcatcaaattctcatcgtcaatcctctccatgttcgcttgnnnnnnnggtgaccaaacctctcaagaaatttcatttctcaaa |
313 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||| |
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| T |
22022849 |
ttaattatcatattttttcatcaaattctcatcttcaatcctctccatgttcacttgaaaaaaaggtgaccaaacctctcaagaaatttcatttctcaaa |
22022750 |
T |
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| Q |
314 |
attttcaaccttttccaattccgtttgttcaatatgtgagtctagtattttgaagtgcataatatc |
379 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22022749 |
attttcaaccttttccaattccgtttgttcaatatgtgagtctagtattttgaagtgcataatatc |
22022684 |
T |
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