View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3888_high_9 (Length: 282)
Name: NF3888_high_9
Description: NF3888
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3888_high_9 |
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Alignment Details
Target: chr2 (Bit Score: 255; Significance: 1e-142; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 255; E-Value: 1e-142
Query Start/End: Original strand, 19 - 273
Target Start/End: Complemental strand, 1457084 - 1456830
Alignment:
| Q |
19 |
gcttgttccctacgcaataaaacttgcaaacttctgtcttaaaaaatcataacctgatcaatggacatgtaacctgaacatacatgataatttcaagaag |
118 |
Q |
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| T |
1457084 |
gcttgttccctacgcaataaaacttgcaaacttctgtcttaaaaaatcataacctgatcaatggacatgtaacctgaacatacatgataatttcaagaag |
1456985 |
T |
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| Q |
119 |
attaaaaagaaaagattaagtagaagagatggtgaaaagcatctgcacaaatcatgaaagtttatctctttcaggcagaggaagaaggattgtgtattca |
218 |
Q |
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| T |
1456984 |
attaaaaagaaaagattaagtagaagagatggtgaaaagcatctgcacaaatcatgaaagtttatctctttcaggcagaggaagaaggattgtgtattca |
1456885 |
T |
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| Q |
219 |
ctagtggatgtgacagaatcttcaaacggatcatctaggacctgatagttcatct |
273 |
Q |
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| T |
1456884 |
ctagtggatgtgacagaatcttcaaacggatcatctaggacctgatagttcatct |
1456830 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 161; E-Value: 6e-86
Query Start/End: Original strand, 45 - 273
Target Start/End: Complemental strand, 1430732 - 1430505
Alignment:
| Q |
45 |
caaacttctgtcttaaaaaatcataacctgatcaatggacatgtaacctgaacatacatgataatttcaagaagattaaaaagaaaagattaagtagaag |
144 |
Q |
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| T |
1430732 |
caaacttttttcttaaataatcataacctgatcaatgaccatgtaacgtgaagatacaagataatttcaagaagatcgaaa-gaaaagattaagtagaag |
1430634 |
T |
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| Q |
145 |
agatggtgaaaagcatctgcacaaatcatgaaagtttatctctttcaggcagaggaagaaggattgtgtattcactagtggatgtgacagaatcttcaaa |
244 |
Q |
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| T |
1430633 |
agatggtgaaaagcatatgcacaaatcatgaaagtttatctctttcaggcagaggaaaaaggattgtgtattcactagtggatatgatagaatcttcaaa |
1430534 |
T |
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| Q |
245 |
cggatcatctaggacctgatagttcatct |
273 |
Q |
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| T |
1430533 |
cggatcatctaggacctgagagttcatct |
1430505 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 58 - 273
Target Start/End: Complemental strand, 1436887 - 1436671
Alignment:
| Q |
58 |
taaaaaatcataacctgatcaatggac--atgtaacctgaacatacatgataatttcaagaagattaaaaagaaaagattaagtagaagagatggtgaaa |
155 |
Q |
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|||| ||||||||||||||||||| | ||||||| |||| ||||| ||||||||||||||||| |||| |||||||| |||||||||| ||||||||| |
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| T |
1436887 |
taaataatcataacctgatcaatgaccccatgtaacgtgaagatacaagataatttcaagaagatcaaaa-gaaaagatcaagtagaagaaatggtgaaa |
1436789 |
T |
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| Q |
156 |
agcatctgcacaaatcatgaaagtttatctctttcaggcagaggaagaaggattgtgtattcactagtggatgtgacagaatcttcaaacggatcatcta |
255 |
Q |
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| T |
1436788 |
agcatatccacaaatcatgaaagtttatctctttcaggcagaggaagaaggattgtgtattcactagtggatatgatagaatcttcaaacggatcgtcta |
1436689 |
T |
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| Q |
256 |
ggacctgatagttcatct |
273 |
Q |
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| T |
1436688 |
ggaccttagagttcatct |
1436671 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 45 - 152
Target Start/End: Complemental strand, 1443549 - 1443443
Alignment:
| Q |
45 |
caaacttctgtcttaaaaaatcataacctgatcaatggacatgtaacctgaacatacatgataatttcaagaagattaaaaagaaaagattaagtagaag |
144 |
Q |
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|||||| || |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| | |||||||||||| ||||||||| |
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| T |
1443549 |
caaactgctttcttaaaaaatcataacctgatcaatggacatgtaacctgaacatacaagataatttcaagaaga-tcaaaagaaaagatcaagtagaag |
1443451 |
T |
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| Q |
145 |
agatggtg |
152 |
Q |
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| T |
1443450 |
agatggtg |
1443443 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 205 - 273
Target Start/End: Complemental strand, 1449699 - 1449631
Alignment:
| Q |
205 |
ggattgtgtattcactagtggatgtgacagaatcttcaaacggatcatctaggacctgatagttcatct |
273 |
Q |
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| T |
1449699 |
ggattgtgtattgactagtgaatatgatagaatcttcaaagggatcatctaggacccgagagttcatct |
1449631 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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