View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3888_low_1 (Length: 617)
Name: NF3888_low_1
Description: NF3888
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3888_low_1 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 438; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 438; E-Value: 0
Query Start/End: Original strand, 129 - 594
Target Start/End: Original strand, 5662913 - 5663378
Alignment:
| Q |
129 |
cgcacaccgtccactccccctttctctataaatcgtgattcttccacttcttcctctcgggttctgcttctacatctatatccatttccaaatttgccta |
228 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
5662913 |
cgcacaccgtccactccccctttctctgtaaatcgtgattcttccacttcttcctctcgggttctgcttctacatctatatccatttccaaatttgccca |
5663012 |
T |
|
| Q |
229 |
aatacgcccatatccgtgttcaataaaacgggaaaacacggttgaatgattattcaatacaagtgcatccaggtaattgtattagcaagattgaattcat |
328 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5663013 |
aatacgcccatatccgtgttcaataaaacggaaaaacacggttgaatgattattctatacaagtgcatccaggtaattgtattagcaagattgaattcat |
5663112 |
T |
|
| Q |
329 |
tgtttacggtgtatctcgctccgacttcgaagcttctgtcaccggtaagaccatggtcgcttctcacaagaagttaaagacacattagcttcacattctc |
428 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5663113 |
tgtttatggtgtatctcgctccgacttcgaagcttctgtcaccggtaagaccatggtcgcttctcacaagaagttaaagacacattagcttcacattctc |
5663212 |
T |
|
| Q |
429 |
ctccatttcctgtcagttttggtactcacgagccagtagttatgttctgctgccttggtttataacttcttcatctttatgttattatactactgttgtt |
528 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
5663213 |
ctccatttcctgtcagttttggtactcacgagccagtagttatgttctgctgccttggtttataacttcttcatctttctgttattatactactgttgtt |
5663312 |
T |
|
| Q |
529 |
ataatagttttcttctgtgctgatattgctaacatgttactataaactgcttatgagaatcatgtg |
594 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
5663313 |
ataatagttttcttctgtgctgatattgctaacatgttactataatctgcttatgagaatcatgtg |
5663378 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 19 - 56
Target Start/End: Original strand, 5662805 - 5662842
Alignment:
| Q |
19 |
gcatatccatctcattgcgaaccatggctctgacctaa |
56 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5662805 |
gcatatccatctcattgcgaaccatggctctgacctaa |
5662842 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 195; Significance: 1e-106; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 157 - 490
Target Start/End: Original strand, 52131183 - 52131508
Alignment:
| Q |
157 |
taaatcgtgattcttccacttcttcctctcgggttctgcttctacatctatatccatttccaaatttgcctaaatacgcccatatccgtgttcaataaaa |
256 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||| ||| |||||||||||| ||||||||| ||||| |
|
|
| T |
52131183 |
taaatcgtgattcttccacttcttcctctcgggttatgcttctacatctatatccatatccaaattcgcccaaatacgcccat--ccgtgttcagtaaaa |
52131280 |
T |
|
| Q |
257 |
cgggaaaacacggttgaatgattattcaatacaagtgcatccaggtaattgtattagcaagattgaattcattgtttacggtgtatctcgctccgacttc |
356 |
Q |
| |
|
|| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| || |||||||||||| ||||| ||| |
|
|
| T |
52131281 |
cga-agaacacggttgaatgattattcaatacaagtgcatccaggtaattgtattagcaagattgaatttattattgacggtgtatctcaatccgatttc |
52131379 |
T |
|
| Q |
357 |
gaagcttctgtcaccggtaagaccatggtcgcttctcacaagaagttaaagacacat-tagcttcacattctcctccatttcctgtcagttttggtactc |
455 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||| ||||| |||| |||| |||| || ||||||||||||||||| ||| ||||||| |
|
|
| T |
52131380 |
gaagcttctgtcatcggtaagaccatggtcgcttctcacaagaagtcaaaga-acatgtagcgtcacgttatcctccatttcctgtcaattt-ggtactc |
52131477 |
T |
|
| Q |
456 |
acgagccagtagttatgttctgctgccttggttta |
490 |
Q |
| |
|
||||| ||||||||||||||||||||||||| |
|
|
| T |
52131478 |
acgaga----agttatgttctgctgccttggttta |
52131508 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 185; Significance: 1e-100; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 133 - 395
Target Start/End: Complemental strand, 11649405 - 11649155
Alignment:
| Q |
133 |
caccgtccactccccctttctctataaatcgtgattcttccacttcttcctctcgggttctgcttctacatctatatccatttccaaatttgcctaaata |
232 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| | |
|
|
| T |
11649405 |
caccgtccactccccctttctctgtaaatcgtgattcttccacttcttcctctcgggttctgcttctacatctatatccatatccaaat----------a |
11649316 |
T |
|
| Q |
233 |
cgcccatatccgtgttcaataaaacgggaaaacacggttgaatgattattcaatacaagtgcatccaggtaattgtattagcaagattgaattcattgtt |
332 |
Q |
| |
|
||||||| ||||||||| ||||| || | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11649315 |
cgcccat--ccgtgttcactaaaaaggaagaacacggttgaatgattattcaatacaagtgcatccaggtaattgtattagcaagattgaattcattgtt |
11649218 |
T |
|
| Q |
333 |
tacggtgtatctcgctccgacttcgaagcttctgtcaccggtaagaccatggtcgcttctcac |
395 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
11649217 |
gacggtgtatctcgctccgacttcgaagcttctgtcatcggtaagaccatggtcgcttctcac |
11649155 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 244 - 443
Target Start/End: Original strand, 22007672 - 22007875
Alignment:
| Q |
244 |
gtgttcaataaaacgggaaaacacggttgaatgattattcaatacaagtgcatccaggtaattgtattagcaagattgaattcattgtttacggtgtatc |
343 |
Q |
| |
|
||||||| ||||| || | ||||| ||||||||||||||||||||| |||||||||| ||| ||||||| |||| ||||||||||||| ||||||||| |
|
|
| T |
22007672 |
gtgttcagtaaaaaggaagaacactgttgaatgattattcaatacaggtgcatccagataagtgtattacgaagactgaattcattgttggcggtgtatc |
22007771 |
T |
|
| Q |
344 |
tcgctccgacttcgaagcttctgtcaccggtaagaccatggtcgcttctcacaagaagttaaagacacat-tagcttcac----attctcctccatttcc |
438 |
Q |
| |
|
||||| ||||||| || ||||||||| || |||||||||||||||| ||||||||||||||||| |||| ||||||||| |||||||||||||||| |
|
|
| T |
22007772 |
tcgcttcgacttcaaaacttctgtcatcgtcaagaccatggtcgcttttcacaagaagttaaaga-acatgtagcttcacgttgattctcctccatttcc |
22007870 |
T |
|
| Q |
439 |
tgtca |
443 |
Q |
| |
|
||||| |
|
|
| T |
22007871 |
tgtca |
22007875 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 152 - 210
Target Start/End: Original strand, 22007561 - 22007619
Alignment:
| Q |
152 |
ctctataaatcgtgattcttccacttcttcctctcgggttctgcttctacatctatatc |
210 |
Q |
| |
|
|||| ||||||| |||||||||||||||||||||||| ||| |||||||||||| |||| |
|
|
| T |
22007561 |
ctctgtaaatcgcgattcttccacttcttcctctcggcttccgcttctacatctgtatc |
22007619 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 453 - 490
Target Start/End: Complemental strand, 11649159 - 11649122
Alignment:
| Q |
453 |
ctcacgagccagtagttatgttctgctgccttggttta |
490 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
11649159 |
ctcacgagccagcagttatgttctgctgccttggttta |
11649122 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University