View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3888_low_11 (Length: 272)
Name: NF3888_low_11
Description: NF3888
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3888_low_11 |
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Alignment Details
Target: chr5 (Bit Score: 51; Significance: 3e-20; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 10 - 60
Target Start/End: Original strand, 29306451 - 29306501
Alignment:
| Q |
10 |
attattcttcagttgaggtttgtgttatgatcattagtttatttttaaaaa |
60 |
Q |
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| T |
29306451 |
attattcttcagttgaggtttgtgttatgatcattagtttatttttaaaaa |
29306501 |
T |
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Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 10 - 55
Target Start/End: Original strand, 29297691 - 29297736
Alignment:
| Q |
10 |
attattcttcagttgaggtttgtgttatgatcattagtttattttt |
55 |
Q |
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| T |
29297691 |
attattcttcagttaaggtttgtgttatgctcattagtttaatttt |
29297736 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 79 - 146
Target Start/End: Original strand, 29297939 - 29298007
Alignment:
| Q |
79 |
acaaagcatgcttcatgcagaattttcaaattatcc-agaaaaagtaaataataagaatggactttcaa |
146 |
Q |
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| T |
29297939 |
acaaagcatgcttcatgcagagttttcaacttatccaaaaaaaaacaaataatcataatggactttcaa |
29298007 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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