View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3888_low_15 (Length: 241)
Name: NF3888_low_15
Description: NF3888
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3888_low_15 |
 | |
|
| [»] scaffold0257 (1 HSPs) |
| | |
|
| [»] scaffold0005 (1 HSPs) |
| | |
|
| [»] scaffold0406 (1 HSPs) |
| | |
|
| [»] scaffold0258 (1 HSPs) |
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|
Alignment Details
Target: scaffold0257 (Bit Score: 210; Significance: 1e-115; HSPs: 1)
Name: scaffold0257
Description:
Target: scaffold0257; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 1 - 225
Target Start/End: Complemental strand, 16608 - 16383
Alignment:
| Q |
1 |
ttccattaatgtattatttaattactccaaacaattttgttggtttaaagagggatgatattaaaaaca-tattgataatttatttagtttagtatcaat |
99 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||| |
|
|
| T |
16608 |
ttccattaatgtattatttaattactccaaacaattttgttggtttaaagagggatgatattaaaaaaaatattgataatttatttagtttagtatcaat |
16509 |
T |
|
| Q |
100 |
tgtggataaatctgacttcttaaaattcatacatctcaacttttatagataactattattagcttttattttcttccttgccgtttcattaaagattagc |
199 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
16508 |
tgtggataaatctgacttcttaaaattcatacatctcaacttttatagataactattattagcttttattttcttccttgccgtttcgttaaagattagc |
16409 |
T |
|
| Q |
200 |
aagttcaaaatttactatataaatta |
225 |
Q |
| |
|
|||||||||||||||||||||||||| |
|
|
| T |
16408 |
aagttcaaaatttactatataaatta |
16383 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 83; Significance: 2e-39; HSPs: 8)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 23 - 192
Target Start/End: Original strand, 33828237 - 33828407
Alignment:
| Q |
23 |
tactccaaacaattttgttggtttaaagagggatgatattaaaaacatattgataatttatttagtttagtatcaattgtggataaatctgacttcttaa |
122 |
Q |
| |
|
||||||||||||||||||||||| ||| | |||||||||| ||| ||||||||||| ||||||||||||| |||||| ||||||||| |||||||| || |
|
|
| T |
33828237 |
tactccaaacaattttgttggttaaaataaagatgatattataaaaatattgataatctatttagtttagtgtcaattatggataaatttgacttctaaa |
33828336 |
T |
|
| Q |
123 |
aa-ttcatacatctcaacttttatagataactattattagcttttattttcttccttgccgtttcattaaa |
192 |
Q |
| |
|
|| | | || | ||||||||||||| ||||||||| ||||||||||||||||| |||| ||||||||||| |
|
|
| T |
33828337 |
aactccttagagctcaacttttataaataactattgttagcttttattttctttgttgcagtttcattaaa |
33828407 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 2 - 192
Target Start/End: Complemental strand, 29191246 - 29191054
Alignment:
| Q |
2 |
tccattaatgtattatttaattactccaaacaattttgttggtttaaagagggatgatattaaaaacatattgataatttatttagtttagtatcaattg |
101 |
Q |
| |
|
||||||||| |||||||| ||||||||||||||||||||||||||| || ||||||||| | | ||||||||| | |||||||||| || |||||| |
|
|
| T |
29191246 |
tccattaatatattatttgcctactccaaacaattttgttggtttaaaaagagatgatattgcacaaatattgatagtatatttagtttggtgtcaatta |
29191147 |
T |
|
| Q |
102 |
tggataaatctgacttcttaaaattc-atacatctcaacttttatagataactatt-attagcttttattttcttccttgccgtttcattaaa |
192 |
Q |
| |
|
||||||||| | | |||||| || || ||| | ||||||||||||| |||||||| ||| |||||||||||||| ||| || ||||||||| |
|
|
| T |
29191146 |
tggataaatttaagttcttacaactctataaagctcaacttttataactaactattgtttaacttttattttcttcgttgtcggttcattaaa |
29191054 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 14 - 171
Target Start/End: Complemental strand, 16366929 - 16366771
Alignment:
| Q |
14 |
ttatttaattactccaaacaattttgttggtttaaagagggatgatattaaaaacatattgataatttatttagtttagtatcaattgtggataaatctg |
113 |
Q |
| |
|
|||||| | ||||||||||||||||||||||| ||| || |||||||||| ||| ||||||||||| ||||||||||||| | |||| | ||||||| || |
|
|
| T |
16366929 |
ttatttgactactccaaacaattttgttggttaaaatagagatgatattataaaaatattgataatctatttagtttagtgttaattatagataaatttg |
16366830 |
T |
|
| Q |
114 |
acttcttaaaa-ttcatacatctcaacttttatagataactattattagcttttatttt |
171 |
Q |
| |
|
| || | |||| ||| || ||||||||||||| ||||||||| ||| |||||||||| |
|
|
| T |
16366829 |
aattttaaaaacttcttagggctcaacttttataaataactattgttatcttttatttt |
16366771 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 24 - 175
Target Start/End: Complemental strand, 42664278 - 42664127
Alignment:
| Q |
24 |
actccaaacaattttgttggtttaaagagggatgatattaaaaacatattgataatttatttagtttagtatcaattgtggataaatctgacttcttaaa |
123 |
Q |
| |
|
|||||||||||||||||||||||||| || | |||| ||||||| ||| | ||||| ||||||||||||| |||||| | |||||| |||||| ||||| |
|
|
| T |
42664278 |
actccaaacaattttgttggtttaaaaagtggtgattttaaaaa-atacttataatctatttagtttagtgtcaattataaataaatttgactttttaaa |
42664180 |
T |
|
| Q |
124 |
a-ttcatacatctcaacttttatagataactattattagcttttattttcttc |
175 |
Q |
| |
|
| |||||| | ||||||||||| |||| |||| |||| ||||||||||||| |
|
|
| T |
42664179 |
acttcatagagtacaacttttataaataattattgttagattttattttcttc |
42664127 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 3 - 175
Target Start/End: Complemental strand, 25247111 - 25246941
Alignment:
| Q |
3 |
ccattaatgtattatttaattactccaaacaattttgttggtttaaagagggatgatattaaaaacatattgataatttatttagtttagtatcaattgt |
102 |
Q |
| |
|
|||||||| |||||||| |||||||||||||||||||| ||||||||| || ||||||| || | ||||||||| ||||||||||||| |||||| | |
|
|
| T |
25247111 |
ccattaatatattatttggctactccaaacaattttgttgatttaaagagatattatattaacaaaa-attgataatatatttagtttagtgtcaattat |
25247013 |
T |
|
| Q |
103 |
ggataaatctgacttcttaaaa-ttcatacatctcaacttttatagataactattattagcttttattttcttc |
175 |
Q |
| |
|
||||||| || |||||||||| | |||| | |||| |||||| | |||| || |||||||||||||||||| |
|
|
| T |
25247012 |
agataaatttgtcttcttaaaactccatagaactcatcttttacaaataa--atagttagcttttattttcttc |
25246941 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 23 - 175
Target Start/End: Complemental strand, 10208075 - 10207929
Alignment:
| Q |
23 |
tactccaaacaattttgttggtttaaagagggatgatattaaaaacatattgataatttatttagtttagtatcaattgtggataaatctgacttcttaa |
122 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||| ||||||| |||||||||||||||||||||| || ||||| |||||| ||||||||||| |
|
|
| T |
10208075 |
tactccaaacaattttgttggtttaaagagagatactattaaa---atattgataatttatttagttttgtgccaatt----ataaatttgacttcttaa |
10207983 |
T |
|
| Q |
123 |
aa-ttcatacatctcaacttttatagataactattattagcttttattttcttc |
175 |
Q |
| |
|
|| |||||| || ||||||| || |||| |||| |||| |||||||| |||| |
|
|
| T |
10207982 |
aacttcatagggcttaacttttttaaataattattgttagattttatttgcttc |
10207929 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 23 - 191
Target Start/End: Original strand, 41877448 - 41877618
Alignment:
| Q |
23 |
tactccaaacaattttgttggtttaaagagggatgatattaaaaacatattgataatttatttagtttagtatcaa--ttgtggataaatctgacttctt |
120 |
Q |
| |
|
||||||||||||||||||||| ||||| || || ||| |||| || ||||| ||||||||||||||||| | |||| | | |||||| ||||||||| |
|
|
| T |
41877448 |
tactccaaacaattttgttgg-ttaaaaagagacgatcttaataaaatattaataatttatttagtttaatgtcaagtatatatataaatttgacttctt |
41877546 |
T |
|
| Q |
121 |
aaaa-ttcatacatctcaacttttatagataactattattagcttttattttcttccttgccgtttcattaa |
191 |
Q |
| |
|
|||| || ||| | ||||||||||||| |||| |||| |||| || || ||||||| ||| ||||||||||| |
|
|
| T |
41877547 |
aaaacttgataaaactcaacttttataaataattattgttagattatagtttcttcgttgtcgtttcattaa |
41877618 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 3 - 91
Target Start/End: Original strand, 26534388 - 26534476
Alignment:
| Q |
3 |
ccattaatgtattatttaattactccaaacaattttgttggtttaaagagggatgatattaaaaacatattgataatttatttagttta |
91 |
Q |
| |
|
||||||| |||||||| | |||||||||||||||||||||| ||| || |||| ||||| ||| ||||||||||| ||||||||||| |
|
|
| T |
26534388 |
ccattaagatattatttggtcactccaaacaattttgttggttaaaatagagatggtattataaaaatattgataatctatttagttta |
26534476 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 83; Significance: 2e-39; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 3 - 192
Target Start/End: Complemental strand, 44508368 - 44508178
Alignment:
| Q |
3 |
ccattaatgtattatttaattactccaaacaattttgttggtttaaagagggatgatattaaaaacatattgataatttatttagtttagtatcaattgt |
102 |
Q |
| |
|
|||||||||||||||| | |||| ||||||||||| |||||||||||||||||||| |||| || ||||||||||| |||||| |||||| |||||| | |
|
|
| T |
44508368 |
ccattaatgtattattcagctacttcaaacaattttattggtttaaagagggatgatgttaataaaatattgataatctatttaatttagtgtcaattat |
44508269 |
T |
|
| Q |
103 |
ggataaatctgacttcttaaaa-ttcatacatctcaacttttatagataactattattagcttttattttcttccttgccgtttcattaaa |
192 |
Q |
| |
|
||||||| ||||||||||||| || ||| | ||||||||||||| |||| |||| | || ||||| ||||||| ||| |||||||||||| |
|
|
| T |
44508268 |
agataaatttgacttcttaaaactttatagagctcaacttttataaataattattttcagattttagtttcttcgttgtcgtttcattaaa |
44508178 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 3 - 192
Target Start/End: Original strand, 7093535 - 7093725
Alignment:
| Q |
3 |
ccattaatgtattatttaattactccaaacaattttgttggtttaaagagggatgatattaaaaacatattgataatttatttagtttagtatcaattgt |
102 |
Q |
| |
|
|||||||| ||||||| || ||||||||||||||||||||||| ||| || |||||||| || || ||| ||||||| ||||||||||||| |||||| | |
|
|
| T |
7093535 |
ccattaatatattattgaactactccaaacaattttgttggttcaaacagagatgatatcaagaa-ataatgataatctatttagtttagtgtcaattat |
7093633 |
T |
|
| Q |
103 |
ggataaatctgacttcttaaaa-ttcatacatctcaac-ttttatagataactattattagcttttattttcttccttgccgtttcattaaa |
192 |
Q |
| |
|
||||||| || |||||||||| | || | | || | | ||||| | ||||||||| || ||||||||||||||| ||| |||||||||||| |
|
|
| T |
7093634 |
tgataaatttgtcttcttaaaactccaaagaacttatcattttacaaataactattgtttgcttttattttcttcgttgtcgtttcattaaa |
7093725 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 4 - 192
Target Start/End: Original strand, 15962314 - 15962504
Alignment:
| Q |
4 |
cattaatgtattatttaattactccaaacaattttgttggtttaaagagggatgatattaaaaacatattgataatttatttagtttagtatcaattgtg |
103 |
Q |
| |
|
||||||| |||||||| ||||||||| ||||||||||||||||||| | || |||||| | | ||||| ||||| ||||||||||||| |||||| || |
|
|
| T |
15962314 |
cattaatatattatttggttactccaatcaattttgttggtttaaagggagaagatattgcacaaatattcataatatatttagtttagtgtcaattatg |
15962413 |
T |
|
| Q |
104 |
gataaatctgacttctta-aaattcatacatctcaacttttatagataactat-tattagcttttattttcttccttgccgtttcattaaa |
192 |
Q |
| |
|
|||| || | | |||||| || | |||| | |||||| |||||| |||||||| ||| |||||||||||||| ||| |||||||||||| |
|
|
| T |
15962414 |
gatacatttaagttcttacaactccataaagctcaacatttataaataactatggtttaacttttattttcttcgttgtcgtttcattaaa |
15962504 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 82 - 192
Target Start/End: Original strand, 41335963 - 41336074
Alignment:
| Q |
82 |
atttagtttagtatcaattgtggataaatctgacttcttaaaa-ttcatacatctcaacttttatagataactattattagcttttattttcttccttgc |
180 |
Q |
| |
|
|||||||||||| |||||| | |||||| ||| || |||||| |||||| | |||||||||||| |||| |||| |||| ||||||||||||| ||| |
|
|
| T |
41335963 |
atttagtttagtgtcaattataaataaatttgatttgttaaaagttcatagagttcaacttttatacataattattgttagattttattttcttcgttgt |
41336062 |
T |
|
| Q |
181 |
cgtttcattaaa |
192 |
Q |
| |
|
||||||||||| |
|
|
| T |
41336063 |
agtttcattaaa |
41336074 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 24 - 192
Target Start/End: Complemental strand, 31067211 - 31067044
Alignment:
| Q |
24 |
actccaaacaattttgttggtttaaagagggatgatattaaaaacatattgataatttatttagtttagtatcaattgtggataaatctgacttcttaaa |
123 |
Q |
| |
|
|||| |||||||||| |||||| ||| || ||| |||||| ||| | ||||||||| ||||| |||||| |||||| |||||| | |||||||| ||| |
|
|
| T |
31067211 |
actctaaacaattttattggttaaaacagagataatattataaaaacattgataatcaatttaatttagtgtcaattatggata--tttgacttctaaaa |
31067114 |
T |
|
| Q |
124 |
attcat-acatctcaacttttatagataactattattagcttttattttcttccttgccgtttcattaaa |
192 |
Q |
| |
|
| || | | | ||||||||||| | |||| |||| |||| |||||||||||| | || ||||||||||| |
|
|
| T |
31067113 |
actccttagagctcaacttttaaaaataattattgttagtttttattttctttgtcgcagtttcattaaa |
31067044 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 82; Significance: 8e-39; HSPs: 10)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 30 - 178
Target Start/End: Original strand, 28521495 - 28521644
Alignment:
| Q |
30 |
aacaattttgttggtttaaagagggatgatattaaaaacatattgataatttatttagtttagtatcaattgtggataaatctgacttcttaaaa-ttca |
128 |
Q |
| |
|
||||||||||||||||||||||| ||| |||||| || ||||||||||| |||||||||||||||||||| || |||||| ||||||||||||| |||| |
|
|
| T |
28521495 |
aacaattttgttggtttaaagagagataatattataataatattgataatctatttagtttagtatcaattatgaataaatttgacttcttaaaatttca |
28521594 |
T |
|
| Q |
129 |
tacatctcaacttttatagataactattattagcttttattttcttcctt |
178 |
Q |
| |
|
|| | ||||| |||| |||||||||||| |||| |||||||||||||||| |
|
|
| T |
28521595 |
tagagctcaatttttgtagataactattgttagtttttattttcttcctt |
28521644 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 4 - 192
Target Start/End: Complemental strand, 28146938 - 28146746
Alignment:
| Q |
4 |
cattaatgtattatttaattactccaaacaattttgtt-ggtttaaagagggatgatattaaaaacatattgataatttatttagtttagtatcaattgt |
102 |
Q |
| |
|
||||||| |||| ||| ||||| ||||||||||||||| |||| |||||| |||| | ||||||| ||||||||| | || |||||||||| |||||| | |
|
|
| T |
28146938 |
cattaatatattgtttgattacgccaaacaattttgtttggttcaaagagagatgctcttaaaaaaatattgatattctaattagtttagtgtcaattat |
28146839 |
T |
|
| Q |
103 |
ggataaatctgacttcttaaaa-ttcatacat--ctcaacttttatagataactattattagcttttattttcttccttgccgtttcattaaa |
192 |
Q |
| |
|
|||||| | |||||||| |||| |||||| | ||||| ||||||||||||||||| |||||||||||||||||||||| | |||||||||| |
|
|
| T |
28146838 |
ggataactttgacttctgaaaacttcatatagaactcaaattttatagataactattgttagcttttattttcttccttgtcatttcattaaa |
28146746 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 27 - 222
Target Start/End: Complemental strand, 28050856 - 28050659
Alignment:
| Q |
27 |
ccaaacaattttgtt-ggtttaaagagggatgatattaaaaacatattgataatttatttagtttagtatcaattgtggataaatctgacttcttaaaa- |
124 |
Q |
| |
|
|||||||| |||||| |||| |||||| ||||||| |||||| |||| |||||| ||||||||||| | || ||| | ||||||| | | |||||||| |
|
|
| T |
28050856 |
ccaaacaaatttgtttggttcaaagagagatgataataaaaaaatatggataatctatttagtttaatgtctattatagataaatttaatttcttaaatc |
28050757 |
T |
|
| Q |
125 |
ttcatacatctcaacttttatagataactattattagcttttattttcttccttgccgtttcattaaagattagcaagttcaaaatttactatataaa |
222 |
Q |
| |
|
|||||| | ||||||||||||||||||||||| |||||||||||||||||||| ||||| ||||| | ||| ||||| ||||||||||||||||| |
|
|
| T |
28050756 |
ttcatagaactcaacttttatagataactattggtagcttttattttcttccttatcgttttattaatgtatagtaagtttaaaatttactatataaa |
28050659 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 23 - 192
Target Start/End: Complemental strand, 45483893 - 45483726
Alignment:
| Q |
23 |
tactccaaacaatttt-gttggtttaaagagggatgatattaaaaacatattgataatttatttagtttagtatcaattgtggataaatctgacttctta |
121 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||| || || |||| |||||| |||||||||||||||||||| | ||||||| ||||| | | |
|
|
| T |
45483893 |
tactccaaacaatttttgttggtttaaagagggatgatatcaataaaatatagataatctatttagtttagtatcaattatagataaat-tgact--taa |
45483797 |
T |
|
| Q |
122 |
aaattcatacatctcaacttttatagataactattattagcttttattttcttccttgccgtttcattaaa |
192 |
Q |
| |
|
|| |||||| | | ||||||||||| |||| |||| |||| |||||||||||| || |||||||||||| |
|
|
| T |
45483796 |
aacttcatagagcacaacttttataaataattattgttagattttattttctttgctgtcgtttcattaaa |
45483726 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 23 - 201
Target Start/End: Original strand, 39650438 - 39650617
Alignment:
| Q |
23 |
tactccaaacaattttgttggtttaaagagggatgatattaaaaacatattgataatttatttagtttagtatcaattgtggataaatctgacttcttaa |
122 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||| || ||||||||||| |||||| ||||| |||||| | ||| ||| ||||||||||| |
|
|
| T |
39650438 |
tactccaaacaattttgttggtttaaagagggataatattaataaaatattgataatctatttaatttagcgtcaattatagatgaatttgacttcttaa |
39650537 |
T |
|
| Q |
123 |
aa-ttcatacatctcaacttttatagataactattattagcttttattttcttccttgccgtttcattaaagattagcaa |
201 |
Q |
| |
|
|| || | | | |||||||||||| | || || |||| ||||| ||||||| |||| ||||||||||| || ||||| |
|
|
| T |
39650538 |
aactttacagagttcaacttttataaacaatctttgttagattttagtttcttcgttgctgtttcattaaatataagcaa |
39650617 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 28 - 156
Target Start/End: Complemental strand, 33087989 - 33087861
Alignment:
| Q |
28 |
caaacaattttgttggtttaaagagggatgatattaaaaacatattgataatttatttagtttagtatcaattgtggataaatctgacttcttaaaa-tt |
126 |
Q |
| |
|
|||||||||||||| ||| ||||| || ||||||||| || ||||||||||| ||||||||||||| |||||| | ||||||| ||||||||||||| || |
|
|
| T |
33087989 |
caaacaattttgttagttcaaagaagggtgatattaataaaatattgataatctatttagtttagtgtcaattatagataaat-tgacttcttaaaactt |
33087891 |
T |
|
| Q |
127 |
catacatctcaacttttatagataactatt |
156 |
Q |
| |
|
|||| | ||||||||||||| |||| |||| |
|
|
| T |
33087890 |
cataaagctcaacttttataaataattatt |
33087861 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 3 - 110
Target Start/End: Original strand, 570951 - 571060
Alignment:
| Q |
3 |
ccattaatgtattatttaattactccaaacaattttgttggtttaaagagggatgatatt--aaaaacatattgataatttatttagtttagtatcaatt |
100 |
Q |
| |
|
|||||||| |||||||| ||||||||| |||||||||||||||||||| ||||||||| | ||| ||||||||||| |||||||| |||| |||||| |
|
|
| T |
570951 |
ccattaatatattatttggctactccaaataattttgttggtttaaagagagatgatattgcataaatatattgataatatatttagtctagtgtcaatt |
571050 |
T |
|
| Q |
101 |
gtggataaat |
110 |
Q |
| |
|
||||||||| |
|
|
| T |
571051 |
atggataaat |
571060 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 23 - 192
Target Start/End: Original strand, 26445949 - 26446119
Alignment:
| Q |
23 |
tactccaaacaattttgttggtttaaagagggatgatattaaaaacatattgataatttatttagtttagtatcaattgtggataaatctgacttcttaa |
122 |
Q |
| |
|
||||||||||||||||||||||||||| || ||| ||||| | | ||||||||||| |||||||||| || |||||| ||||||||| | | |||||| |
|
|
| T |
26445949 |
tactccaaacaattttgttggtttaaaaagagat-atattgcacaaatattgataatatatttagtttggtgtcaattatggataaatttaagttcttac |
26446047 |
T |
|
| Q |
123 |
aattc-atacatctcaacttttatagataactatt-attagcttttattttcttccttgccgtttcattaaa |
192 |
Q |
| |
|
|| || ||| | ||||||||||||| |||| |||| ||| |||||||||||||| ||| | ||||||||| |
|
|
| T |
26446048 |
aactctataaagctcaacttttataaataattattgtttaacttttattttcttcgttgttgattcattaaa |
26446119 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 23 - 192
Target Start/End: Complemental strand, 46091937 - 46091766
Alignment:
| Q |
23 |
tactccaaacaattttgttggtttaaagagggatgatattaaaaacatattgataatttatttagtttagtatcaattgtggataaatctgacttcttaa |
122 |
Q |
| |
|
|||||||||||||||| |||||| ||| | ||| |||||| ||| ||||||||||| |||||||||||| | |||| ||||||||| |||||||| || |
|
|
| T |
46091937 |
tactccaaacaattttattggttaaaacatagataatattataaaaatattgataatccatttagtttagtgttaattatggataaatttgacttctaaa |
46091838 |
T |
|
| Q |
123 |
-aattcatacatctcaacttttatagataactattattagc-ttttattttcttccttgccgtttcattaaa |
192 |
Q |
| |
|
| | | || | |||||| |||||| ||||||||| ||||| |||||||||||| |||| |||||||||| |
|
|
| T |
46091837 |
tactccttagagctcaacatttataaataactattgttagctttttattttctttgttgcaatttcattaaa |
46091766 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 147 - 215
Target Start/End: Complemental strand, 28001571 - 28001503
Alignment:
| Q |
147 |
gataactattattagcttttattttcttccttgccgtttcattaaagattagcaagttcaaaatttact |
215 |
Q |
| |
|
|||||| ||| |||||||||||||||||||||| | |||||| |||| || ||||| |||||||||| |
|
|
| T |
28001571 |
gataaccattgttagcttttattttcttccttgtcatttcatgaaagtataataagtttaaaatttact |
28001503 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 75; Significance: 1e-34; HSPs: 8)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 3 - 192
Target Start/End: Original strand, 55250455 - 55250645
Alignment:
| Q |
3 |
ccattaatgtattatttaattactccaaacaattttgttggtttaaagagggatgatattaaaaacatattgataatttatttagtttagtatcaattgt |
102 |
Q |
| |
|
|||||||| |||||||| | |||| |||||||||||||||||| |||||||||| || |||| || ||||||||||| ||||||||||||| |||||| | |
|
|
| T |
55250455 |
ccattaatatattatttgactacttcaaacaattttgttggttcaaagagggataatgttaataaaatattgataatctatttagtttagtgtcaattat |
55250554 |
T |
|
| Q |
103 |
ggataaatctgacttcttaaaa-ttcatacatctcaacttttatagataactattattagcttttattttcttccttgccgtttcattaaa |
192 |
Q |
| |
|
||||||| ||||||||||||| || ||| | ||||||||| ||| |||| |||| |||| ||||| ||||||| ||| |||||||||| |
|
|
| T |
55250555 |
agataaatttgacttcttaaaattttatatagctcaactttaataaataattattgttagattttagtttcttcgttgttatttcattaaa |
55250645 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 3 - 201
Target Start/End: Complemental strand, 47669055 - 47668856
Alignment:
| Q |
3 |
ccattaatgtattatttaattactccaaacaattttgttggtttaaagagggatgatattaaaaacatattgataatttatttagtttagtatcaattgt |
102 |
Q |
| |
|
|||||||| |||||||| | |||||| |||||||||||||||||||||| |||| || |||| || ||||||||||| |||||| |||||| |||||| | |
|
|
| T |
47669055 |
ccattaatatattatttgactactccgaacaattttgttggtttaaagatggataatgttaataaaatattgataatctatttaatttagtgtcaattat |
47668956 |
T |
|
| Q |
103 |
ggataaatctgacttcttaaaa-ttcatacatctcaacttttatagataactattattagcttttattttcttccttgccgtttcattaaagattagcaa |
201 |
Q |
| |
|
||||||| ||| ||||||||| || ||| | |||||||||||| |||| || |||| ||||| ||||||| ||| |||||||||||| || ||||| |
|
|
| T |
47668955 |
agataaatttgatttcttaaaactttatagagttcaacttttataaataatcatcgttagattttagtttcttcattgtcgtttcattaaatataagcaa |
47668856 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 3 - 192
Target Start/End: Complemental strand, 1101233 - 1101044
Alignment:
| Q |
3 |
ccattaatgtattatttaattactccaaacaattttgttggtttaaagagggatgatattaaaaacatattgataatttatttagtttagtatcaattgt |
102 |
Q |
| |
|
|||||||| |||||||| ||||||||||||||| ||||||| |||||| || ||||||| || | ||||||||| ||||||||||||| |||| | | |
|
|
| T |
1101233 |
ccattaatatattatttggctactccaaacaatttagttggttcaaagagatattatattaacaaaa-attgataatctatttagtttagtgtcaactat |
1101135 |
T |
|
| Q |
103 |
ggataaatctgacttcttaaaattc-atacatctcaacttttatagataactattattagcttttattttcttccttgccgtttcattaaa |
192 |
Q |
| |
|
||||||| || |||||||||| || ||| | |||| |||||| | ||||||||| |||||||||||||||| ||| ||||||||||| |
|
|
| T |
1101134 |
agataaatttgtcttcttaaaactcaatagagctcatcttttacaaataactattggtagcttttattttcttagttgttgtttcattaaa |
1101044 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 24 - 174
Target Start/End: Complemental strand, 29857529 - 29857378
Alignment:
| Q |
24 |
actccaaacaattttgttggtttaaagagggatgatattaaaaacatattgataatttatttagtttagtatcaattgtggataaatctgacttcttaaa |
123 |
Q |
| |
|
|||||||| ||||||||||||| ||| || |||||| || ||| ||||||||||| ||||||||||||| | |||| |||||||| |||||||| ||| |
|
|
| T |
29857529 |
actccaaataattttgttggttaaaacagagatgattctataaaaatattgataatctatttagtttagtgttaattatggataaaattgacttctaaaa |
29857430 |
T |
|
| Q |
124 |
attc-atacatctcaacttttatagataactattattagcttttattttctt |
174 |
Q |
| |
|
| || || | ||||||||||||| |||||||| ||| ||||||||||||| |
|
|
| T |
29857429 |
actctttaaagctcaacttttataagtaactattgttaacttttattttctt |
29857378 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 23 - 192
Target Start/End: Complemental strand, 20447894 - 20447725
Alignment:
| Q |
23 |
tactccaaacaattttgttggtttaaagagggatgatattaaaaacatattgataatttatttagtttagtatcaattgtggataaatctgacttcttaa |
122 |
Q |
| |
|
||||| |||||||||||||| || ||||||||||||| |||| || |||| ||| || |||||| ||||| |||||| ||||||| |||||||||| |
|
|
| T |
20447894 |
tactctaaacaattttgttgattgaaagagggatgatgttaataaaatat-gatgatctatttaagttagtgtcaattaaagataaatttgacttcttac |
20447796 |
T |
|
| Q |
123 |
aat-tcatacatctcaacttttatagataactattattagcttttattttcttccttgccgtttcattaaa |
192 |
Q |
| |
|
|| ||||| | ||||||||||||| |||| |||| |||| ||||| ||||||| ||| |||||||||||| |
|
|
| T |
20447795 |
aacatcatagagctcaacttttataaataattattgttagattttagtttcttcgttgtcgtttcattaaa |
20447725 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 2 - 123
Target Start/End: Original strand, 1838571 - 1838692
Alignment:
| Q |
2 |
tccattaatgtattatttaattactccaaacaattttgttggtttaaagagggatgatattaaaaacatattgataatttatttagtttagtatcaattg |
101 |
Q |
| |
|
||||||||| |||||||| | ||||||||||||||||||||| | || ||| ||||||| || | | ||||||||||| |||||| |||| | | || | |
|
|
| T |
1838571 |
tccattaatatattatttgactactccaaacaattttgttggatcaatgagagatgataatacataaatattgataatatatttactttaatgttaacta |
1838670 |
T |
|
| Q |
102 |
tggataaatctgacttcttaaa |
123 |
Q |
| |
|
||||||||| | |||||||||| |
|
|
| T |
1838671 |
tggataaattttacttcttaaa |
1838692 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 2 - 100
Target Start/End: Original strand, 35466418 - 35466517
Alignment:
| Q |
2 |
tccattaatgtattatttaattactccaaacaattttgttggtttaaagagggatga-tattaaaaacatattgataatttatttagtttagtatcaatt |
100 |
Q |
| |
|
||||||||| ||||| || |||| | ||||| |||||||||||||||||| ||||| | |||| || ||| | ||||| ||||||||||||| |||||| |
|
|
| T |
35466418 |
tccattaatatattacttgattatttcaaacgattttgttggtttaaagaaagatgatttttaataaaatacttataatctatttagtttagtgtcaatt |
35466517 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 63 - 124
Target Start/End: Original strand, 46964028 - 46964087
Alignment:
| Q |
63 |
aaaaacatattgataatttatttagtttagtatcaattgtggataaatctgacttcttaaaa |
124 |
Q |
| |
|
||||| ||||||||||||||||||| ||| |||||| ||||||||| ||||||||||||| |
|
|
| T |
46964028 |
aaaaaaatattgataatttatttag--tagagtcaattatggataaatttgacttcttaaaa |
46964087 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 73; Significance: 2e-33; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 2 - 192
Target Start/End: Complemental strand, 35952077 - 35951885
Alignment:
| Q |
2 |
tccattaatgtattatttaattactccaaacaattttgttggtttaaagagggatgatattaaaaacatattgataatttatttagtttagtatcaattg |
101 |
Q |
| |
|
|||||| || |||||||| ||||||||||||||||||||||||||| || ||||||||| || | ||||||||||| ||||||||||||| |||||| |
|
|
| T |
35952077 |
tccattgatatattatttggctactccaaacaattttgttggtttaaaaagagatgatattgaacaaatattgataatatatttagtttagtgtcaatta |
35951978 |
T |
|
| Q |
102 |
tggataaatctgacttcttaaaattc-atacatctcaacttttatagataactatt-attagcttttattttcttccttgccgtttcattaaa |
192 |
Q |
| |
|
||||||||| | | |||||| || || ||| | ||||||||||||| ||||||||| ||| |||||||||||||| ||| | |||||||||| |
|
|
| T |
35951977 |
tggataaattttagttcttacaactctataaagctcaacttttataaataactattgtttaacttttattttcttcgttgtcatttcattaaa |
35951885 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 12 - 192
Target Start/End: Complemental strand, 15471216 - 15471035
Alignment:
| Q |
12 |
tattatttaattactccaaacaattttgttggtttaaagagggatgatattaaaaacatattgataatttatttagtttagtatcaattgtggataaatc |
111 |
Q |
| |
|
|||||||| |||||||||||||||||||||||| ||| || ||||||| || ||| ||||||||||| ||||||||||||| |||||| ||||||||| |
|
|
| T |
15471216 |
tattatttggttactccaaacaattttgttggttaaaacagagatgataatacaaaaatattgataatctatttagtttagtgtcaattatggataaatt |
15471117 |
T |
|
| Q |
112 |
tgacttcttaaaattca-tacatctcaacttttatagataactattattagcttttattttcttccttgccgtttcattaaa |
192 |
Q |
| |
|
||| |||| |||| ||| || | ||||||||||||| ||||||| | ||| ||||| ||||||| ||| ||||||||||| |
|
|
| T |
15471116 |
tgaattctaaaaactcattagagctcaacttttataaataactaatgttaacttttcttttctttgttgtagtttcattaaa |
15471035 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 24 - 192
Target Start/End: Complemental strand, 14145016 - 14144844
Alignment:
| Q |
24 |
actccaaacaattttgttggtttaaagagggatgatattaaaaacatattgataatttatttagtttagtatcaat---tgtggataaatctgacttctt |
120 |
Q |
| |
|
|||||||| ||||||||||||| ||| | |||||||||| ||| ||||||||||| ||||||||||||| ||||| | ||||||||| |||| ||| |
|
|
| T |
14145016 |
actccaaataattttgttggttaaaacatagatgatattataaaaatattgataatctatttagtttagtgtcaataattatggataaatttgacctcta |
14144917 |
T |
|
| Q |
121 |
aaaattcat-acatctcaacttttatagataactattattagcttttattttcttccttgccgtttcattaaa |
192 |
Q |
| |
|
|||| || | | | || |||||||||| |||| |||| ||||||||||||||||| |||| ||||||||||| |
|
|
| T |
14144916 |
aaaactccttagagcttaacttttataaataagtattgttagcttttattttctttgttgcagtttcattaaa |
14144844 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 3 - 192
Target Start/End: Complemental strand, 33140453 - 33140264
Alignment:
| Q |
3 |
ccattaatgtattatttaattactccaaacaattttgttggtttaaagagggatgatattaaaaacatattgataatttatttagtttagtatcaattgt |
102 |
Q |
| |
|
|||||||| |||||||| |||||||||||||||| ||||||||||||| ||||||||| | | ||| |||||| ||||||| |||| |||||| | |
|
|
| T |
33140453 |
ccattaatatattatttggctactccaaacaattttattggtttaaagagagatgatattgcacaagtatcgataatatatttag--tagtgtcaattat |
33140356 |
T |
|
| Q |
103 |
ggataaatctgacttctta-aaattcatacatctcaacttttatagataactatt-attagcttttattttcttccttgccgtttcattaaa |
192 |
Q |
| |
|
|||||||| | | |||||| || | |||| | ||||| ||||||| ||||||||| ||| |||||||||||||| ||| |||||||||||| |
|
|
| T |
33140355 |
ggataaatttaagttcttacaactccataaagctcaaattttataaataactattgtttaacttttattttcttcgttgtcgtttcattaaa |
33140264 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 24 - 175
Target Start/End: Original strand, 29790601 - 29790751
Alignment:
| Q |
24 |
actccaaacaattttgttggtttaaagagggatgatattaaaaacatattgataatttatttagtttagtatcaattgtggataaatctgacttcttaaa |
123 |
Q |
| |
|
|||||||||||||||||||||||||| || |||||| |||||| ||| | ||||| |||||||| |||| |||||| | ||||| |||||| ||||| |
|
|
| T |
29790601 |
actccaaacaattttgttggtttaaaaagagatgattttaaaa--atacttataatctatttagtctagtgtcaattataagtaaatttgacttgttaaa |
29790698 |
T |
|
| Q |
124 |
a-ttcatacatctcaacttttatagataactattattagcttttattttcttc |
175 |
Q |
| |
|
| |||||| | ||||||||||| |||| |||| |||| ||||||||||||| |
|
|
| T |
29790699 |
acttcataaagtacaacttttataaataattattgttagattttattttcttc |
29790751 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 73; Significance: 2e-33; HSPs: 9)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 3 - 174
Target Start/End: Complemental strand, 18061275 - 18061103
Alignment:
| Q |
3 |
ccattaatgtattatttaattactccaaacaattttgttggtttaaagagggatgatattaaaaacatattgataatttatttagtttagtatcaattgt |
102 |
Q |
| |
|
|||||||| |||||||| |||||||||||||||| ||||||| |||||| |||| |||||||| ||||| ||||| ||||||||||||| || ||| | |
|
|
| T |
18061275 |
ccattaatatattatttggttactccaaacaatttggttggttcaaagagagatgctattaaaataatattaataatctatttagtttagtgtccattat |
18061176 |
T |
|
| Q |
103 |
ggataaatctgacttcttaaaattc-atacatctcaacttttatagataactattattagcttttattttctt |
174 |
Q |
| |
|
| |||||| ||||||||||||| || ||| | ||||| ||||||| ||||||||| ||||||||| ||||||| |
|
|
| T |
18061175 |
gaataaatttgacttcttaaaactctatatagctcaaattttataaataactattgttagcttttgttttctt |
18061103 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 23 - 192
Target Start/End: Original strand, 19865902 - 19866070
Alignment:
| Q |
23 |
tactccaaacaatttt-gttggtttaaagagggatgatattaaaaacatattgataatttatttagtttagtatcaattgtggataaatctgacttctta |
121 |
Q |
| |
|
|||||||||||||||| ||||||||||||| ||||||||| || || |||| |||||| |||||||||||||||||||| | ||||||| ||||| | | |
|
|
| T |
19865902 |
tactccaaacaatttttgttggtttaaagaaggatgatatcaataaaatatagataatctatttagtttagtatcaattatagataaatttgact--taa |
19865999 |
T |
|
| Q |
122 |
aaattcatacatctcaacttttatagataactattattagcttttattttcttccttgccgtttcattaaa |
192 |
Q |
| |
|
|| |||||| | | ||||||||||| |||| |||| |||| |||||||||||| || |||||||||||| |
|
|
| T |
19866000 |
aacttcatagagcacaacttttataaataattattgttagattttattttctttactgtcgtttcattaaa |
19866070 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 23 - 192
Target Start/End: Original strand, 19870803 - 19870971
Alignment:
| Q |
23 |
tactccaaacaatttt-gttggtttaaagagggatgatattaaaaacatattgataatttatttagtttagtatcaattgtggataaatctgacttctta |
121 |
Q |
| |
|
|||||||||||||||| ||||||||||||| ||||||||| || || |||| |||||| |||||||||||||||||||| | ||||||| ||||| | | |
|
|
| T |
19870803 |
tactccaaacaatttttgttggtttaaagaaggatgatatcaataaaatatagataatctatttagtttagtatcaattatagataaatttgact--taa |
19870900 |
T |
|
| Q |
122 |
aaattcatacatctcaacttttatagataactattattagcttttattttcttccttgccgtttcattaaa |
192 |
Q |
| |
|
|| |||||| | | ||||||||||| |||| |||| |||| |||||||||||| || |||||||||||| |
|
|
| T |
19870901 |
aacttcatagagcacaacttttataaataattattgttagattttattttctttactgtcgtttcattaaa |
19870971 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 23 - 192
Target Start/End: Original strand, 19875704 - 19875872
Alignment:
| Q |
23 |
tactccaaacaatttt-gttggtttaaagagggatgatattaaaaacatattgataatttatttagtttagtatcaattgtggataaatctgacttctta |
121 |
Q |
| |
|
|||||||||||||||| ||||||||||||| ||||||||| || || |||| |||||| |||||||||||||||||||| | ||||||| ||||| | | |
|
|
| T |
19875704 |
tactccaaacaatttttgttggtttaaagaaggatgatatcaataaaatatagataatctatttagtttagtatcaattatagataaatttgact--taa |
19875801 |
T |
|
| Q |
122 |
aaattcatacatctcaacttttatagataactattattagcttttattttcttccttgccgtttcattaaa |
192 |
Q |
| |
|
|| |||||| | | ||||||||||| |||| |||| |||| |||||||||||| || |||||||||||| |
|
|
| T |
19875802 |
aacttcatagagcacaacttttataaataattattgttagattttattttctttactgtcgtttcattaaa |
19875872 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 3 - 192
Target Start/End: Original strand, 43559637 - 43559827
Alignment:
| Q |
3 |
ccattaatgtattatttaattactccaaacaattttgttggtttaaagagggatgatattaaaaacatattgataatttatttagtttagtatcaattgt |
102 |
Q |
| |
|
|||||||| |||||||| |||||||||||||||||||||||||||||| ||| || ||||||| ||| | ||||| || |||||||||| |||||| | |
|
|
| T |
43559637 |
ccattaatatattatttggctactccaaacaattttgttggtttaaagagagattattttaaaaaaatacttataatctacttagtttagtgtcaattat |
43559736 |
T |
|
| Q |
103 |
ggataaatctgacttcttaaaa-ttcatacatctcaacttttatagataactattattagcttttattttcttccttgccgtttcattaaa |
192 |
Q |
| |
|
|||||| |||||| |||||| |||||| | ||||||||||| |||| |||| ||| ||||||||||||| ||| || ||||||||| |
|
|
| T |
43559737 |
aaataaatttgacttgttaaaacttcataaagtacaacttttataaataattattgttaaattttattttcttcgttgtcgcttcattaaa |
43559827 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 3 - 172
Target Start/End: Complemental strand, 45040224 - 45040055
Alignment:
| Q |
3 |
ccattaatgtattatttaattactccaaacaattttgttggtttaaagagggatgatattaaaaacatattgataatttatttagtttagtatcaattgt |
102 |
Q |
| |
|
|||||||| ||||||||| | ||||||||||||||||||| || |||||| || ||||||| || | ||||||||| |||||||||||||||||||| | |
|
|
| T |
45040224 |
ccattaatatattatttagtcactccaaacaattttgttgtttcaaagagatattatattaacaaaa-attgataatctatttagtttagtatcaattat |
45040126 |
T |
|
| Q |
103 |
ggataaatctgacttcttaaaa-ttcatacatctcaacttttatagataactattattagcttttattttc |
172 |
Q |
| |
|
||||||| || |||||||||| | |||| | |||| ||||| | ||||||||| ||| ||||||||||| |
|
|
| T |
45040125 |
agataaatttgtcttcttaaaactccatagagctcatattttacaaataactattgttaccttttattttc |
45040055 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 105 - 174
Target Start/End: Complemental strand, 21017267 - 21017197
Alignment:
| Q |
105 |
ataaatctgacttcttaaaattc-atacatctcaacttttatagataactattattagcttttattttctt |
174 |
Q |
| |
|
|||||| ||||||||||||| || ||| ||||||||||||||| ||||||||| ||||||||||||||||| |
|
|
| T |
21017267 |
ataaatttgacttcttaaaactccatatatctcaacttttataaataactattgttagcttttattttctt |
21017197 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 75 - 192
Target Start/End: Complemental strand, 33226707 - 33226589
Alignment:
| Q |
75 |
ataatttatttagtttagtatcaattgtggataaatctgacttcttaaaa-ttcatacatctcaacttttatagataactattattagcttttattttct |
173 |
Q |
| |
|
||||| ||||||||||||| |||||| | |||||| |||||| |||||| |||||| | ||||||||||| |||| |||| |||| ||||||||||| |
|
|
| T |
33226707 |
ataatctatttagtttagtgtcaattataaataaatttgacttgttaaaacttcatagagtacaacttttataaataattattgttagattttattttct |
33226608 |
T |
|
| Q |
174 |
tccttgccgtttcattaaa |
192 |
Q |
| |
|
|| ||| |||||||||||| |
|
|
| T |
33226607 |
tcattgtcgtttcattaaa |
33226589 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #9
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 3 - 124
Target Start/End: Complemental strand, 29686286 - 29686165
Alignment:
| Q |
3 |
ccattaatgtattatttaattactccaaacaattttgttggtttaaagagggatgatattaaaaacatattgataatttatttagtttagtatcaattgt |
102 |
Q |
| |
|
||||||| |||||||| | ||| |||| ||||||||||||| ||| || ||||||| || ||| ||||||||||| |||||| |||||| |||||| | |
|
|
| T |
29686286 |
ccattaagatattatttggtcacttcaaataattttgttggttaaaacagagatgatactataaaaatattgataatctatttattttagtgtcaattat |
29686187 |
T |
|
| Q |
103 |
ggataaatctgacttcttaaaa |
124 |
Q |
| |
|
||||||| |||||||| |||| |
|
|
| T |
29686186 |
ggataaaattgacttctaaaaa |
29686165 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0005 (Bit Score: 55; Significance: 1e-22; HSPs: 1)
Name: scaffold0005
Description:
Target: scaffold0005; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 23 - 192
Target Start/End: Original strand, 270269 - 270438
Alignment:
| Q |
23 |
tactccaaacaattttgttggtttaaagagggatgatattaaaaacatattgataatttatttagtttagtatcaattgtggataaatctgacttcttaa |
122 |
Q |
| |
|
|||| |||||||||| |||||| ||| || |||||||||| ||| ||||||||||| || |||||||||| |||||| | |||||| |||||| | || |
|
|
| T |
270269 |
tacttcaaacaattta-ttggttaaaacagagatgatattataaaaatattgataatctacttagtttagtgtcaattataaataaatttgacttttaaa |
270367 |
T |
|
| Q |
123 |
aattcat-acatctcaacttttatagataactattattagcttttattttcttccttgccgtttcattaaa |
192 |
Q |
| |
|
|| || | | | ||||||||||||| ||||||||| ||||||||||||||||| |||| ||||||||||| |
|
|
| T |
270368 |
aactccttagagctcaacttttataaataactatttttagcttttattttctttgttgcagtttcattaaa |
270438 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 52; Significance: 6e-21; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 23 - 192
Target Start/End: Original strand, 6036789 - 6036960
Alignment:
| Q |
23 |
tactccaaacaattttgttggtttaaagagggatgatattaaaaacatattgataatttatttagtttagtatcaattgtggataaatctgacttcttaa |
122 |
Q |
| |
|
||||||||||||||||||||||| |||| | |||||||||| | | ||||| | ||| ||| | |||| | ||||| ||||||||| | ||||||||| |
|
|
| T |
6036789 |
tactccaaacaattttgttggttcaaagggagatgatattacacaaatattaaaaatatatcaaatttaatgacaattatggataaattttacttcttaa |
6036888 |
T |
|
| Q |
123 |
aattca-tacatctcaacttttatagataactattatt-agcttttattttcttccttgccgtttcattaaa |
192 |
Q |
| |
|
|| ||| || | |||||||||||| ||||||| |||| |||||||||||||||| ||||| |||||||||| |
|
|
| T |
6036889 |
aactcaatagagttcaacttttataaataactactatttagcttttattttcttcgttgccatttcattaaa |
6036960 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 23 - 191
Target Start/End: Original strand, 19910130 - 19910296
Alignment:
| Q |
23 |
tactccaaacaattttgttggtttaaagagggatgatattaaaaacatattgataatttatttagtttagtatcaattgtggataaatctgacttcttaa |
122 |
Q |
| |
|
||||||||||||||||||||||| ||| || |||||||||| ||| ||||||||||| ||||| ||||||| | || ||||||||| |||||||| || |
|
|
| T |
19910130 |
tactccaaacaattttgttggttaaaacagagatgatattataaaaatattgataatctattttgtttagtgt---ttatggataaatttgacttctaaa |
19910226 |
T |
|
| Q |
123 |
aa-ttcatacatctcaacttttatagataactattattagcttttattttcttccttgccgtttcattaa |
191 |
Q |
| |
|
|| | || | | ||||||||||| ||||||||| ||||| |||||||| || |||| |||||||||| |
|
|
| T |
19910227 |
aacaccttagagcacaacttttataaataactattgttagcgtttattttttttgttgcagtttcattaa |
19910296 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 2 - 175
Target Start/End: Original strand, 47235883 - 47236054
Alignment:
| Q |
2 |
tccattaatgtattatttaattactccaaacaattttgttggtttaaagagggatgatattaaaaacatattgataatttatttagtttagtatcaattg |
101 |
Q |
| |
|
||||||||| |||||||| || ||||||||||||||||| ||||||||| || ||||||| || | ||||||||| ||||||||||||| |||||| |
|
|
| T |
47235883 |
tccattaatatattatttggctattccaaacaattttgttgatttaaagagatattatattaacaaaa-attgataatctatttagtttagtgtcaatta |
47235981 |
T |
|
| Q |
102 |
tggataaatctgacttcttaaaa-ttcatacatctcaacttttatagataactattattagcttttattttcttc |
175 |
Q |
| |
|
| ||||||| || |||||||||| | |||| | |||| |||||| | |||| || |||||||||||||||||| |
|
|
| T |
47235982 |
tagataaatttgtcttcttaaaactccatagaactcatcttttacaaataa--atagttagcttttattttcttc |
47236054 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 3 - 100
Target Start/End: Complemental strand, 34821234 - 34821137
Alignment:
| Q |
3 |
ccattaatgtattatttaattactccaaacaattttgttggtttaaagagggatgatattaaaaacatattgataatttatttagtttagtatcaatt |
100 |
Q |
| |
|
||||| || ||||| || ||||||||||||||||||||||||||||||||||| ||| ||| | ||||||||||| ||||||||| ||| |||||| |
|
|
| T |
34821234 |
ccattgatatattacttgattactccaaacaattttgttggtttaaagagggacgatgttagtataatattgataatctatttagttaagtgtcaatt |
34821137 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 14 - 110
Target Start/End: Complemental strand, 27705482 - 27705387
Alignment:
| Q |
14 |
ttatttaattactccaaacaattttgttggtttaaagagggatgatattaaaaacatattgataatttatttagtttagtatcaattgtggataaat |
110 |
Q |
| |
|
|||||| |||||| |||||||||||||||||||||| | || |||||||||| ||||||||||| ||||||| || ||||||||| ||||||||| |
|
|
| T |
27705482 |
ttatttgattacttcaaacaattttgttggtttaaaaaaa-ataatattaaaaaaatattgataatctatttagcttggtatcaattatggataaat |
27705387 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 12 - 192
Target Start/End: Original strand, 4017065 - 4017245
Alignment:
| Q |
12 |
tattatttaattactccaaacaattttgttggtttaaagagggatgatattaaaaacatattgataatttatttagtttagtatcaattgtggataaatc |
111 |
Q |
| |
|
|||||||||| ||| |||||||||||||| ||| || ||| |||||||||||||| | ||| |||| ||||||||||||| | |||| || |||||| |
|
|
| T |
4017065 |
tattatttaacaacttcaaacaattttgttagttcaaggagagatgatattaaaaatacatttgtaatctatttagtttagtgttaattatgaataaatt |
4017164 |
T |
|
| Q |
112 |
tgacttcttaaaattc-atacatctcaacttttatagataactattattagcttttattttcttccttgccgtttcattaaa |
192 |
Q |
| |
|
|||||||| |||| || ||| | ||||||||||||| |||| | || |||| |||| |||| || |||| ||||||||||| |
|
|
| T |
4017165 |
tgacttctgaaaactcgatagaactcaacttttataaataattttttttagatttt-ttttttttgttgcagtttcattaaa |
4017245 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0406 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 1)
Name: scaffold0406
Description:
Target: scaffold0406; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 23 - 124
Target Start/End: Complemental strand, 12778 - 12678
Alignment:
| Q |
23 |
tactccaaacaattttgttggtttaaagagggatgatattaaaaacatattgataatttatttagtttagtatcaattgtggataaatctgacttcttaa |
122 |
Q |
| |
|
||||||||||||||||||||||| |||||| || ||||||| || | ||||||| | ||||||||||||| |||| | ||||||||| || |||||||| |
|
|
| T |
12778 |
tactccaaacaattttgttggttcaaagagatattatattaataaaa-attgatattctatttagtttagtgtcaagtatggataaatttgtcttcttaa |
12680 |
T |
|
| Q |
123 |
aa |
124 |
Q |
| |
|
|| |
|
|
| T |
12679 |
aa |
12678 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0258 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 1)
Name: scaffold0258
Description:
Target: scaffold0258; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 4 - 125
Target Start/End: Complemental strand, 18228 - 18107
Alignment:
| Q |
4 |
cattaatgtattatttaattactccaaacaattttgttggtttaaagagggatgatattaaaaacatattgataatttatttagtttagtatcaattgtg |
103 |
Q |
| |
|
||||||| |||||||| ||||||||| |||||||||||||||||| |||||||||| | | ||||| ||||| ||||||||||| | |||||| | |
|
|
| T |
18228 |
cattaatatattatttgtctactccaaataattttgttggtttaaaggaagatgatattacacaaatattaataatatatttagtttattgtcaattata |
18129 |
T |
|
| Q |
104 |
gataaatctgacttcttaaaat |
125 |
Q |
| |
|
||| ||| | |||||||||||| |
|
|
| T |
18128 |
gatgaattttacttcttaaaat |
18107 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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