View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3888_low_5 (Length: 384)
Name: NF3888_low_5
Description: NF3888
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3888_low_5 |
 | |
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Alignment Details
Target: chr2 (Bit Score: 363; Significance: 0; HSPs: 8)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 363; E-Value: 0
Query Start/End: Original strand, 6 - 372
Target Start/End: Complemental strand, 1456800 - 1456434
Alignment:
| Q |
6 |
gatatgtgaagttgaatctacttgggtatgtgaagttgaatctactatccaatttgcattaaggtgatgcatgtggtttttgttaaaatcttgtcggtac |
105 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1456800 |
gatatgtgaagttgaatctacttgggtatgtgaagttgaatctactatccaatttgcattaaggtgatgcatgtggtttttgttaaaatcttgtcggtac |
1456701 |
T |
|
| Q |
106 |
gtctcctctttctgccattgctcccatttttcagccaaaccatcgccttcaagcattctcaccacctcagacatttttggtctttccataggtgaaaatt |
205 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1456700 |
gtctcctctttctgccattgctcccatttttcagccaaaccatcgccttcaagcattctcaccacctcagacatttttggtctttccataggtgaaaatt |
1456601 |
T |
|
| Q |
206 |
gtgtgcatagtaaagccacttggattaacttctctacctcttggattaacttctctacctcatcattatttccctttaattttgcatccaccagtgtttc |
305 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1456600 |
gtgtgcatagtaaagccacttggattaacttctctacctcttggattaacttctctacctcatcattatttccctttaattttgcatccaccagtgtttc |
1456501 |
T |
|
| Q |
306 |
caacttcttgtctatgagaagtcctttaacctggattcaaaacaatgtcaaacagtttccacctatg |
372 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
1456500 |
caacttcttgtctatgagaagtcctttaacctggattcaaaacaatgtcaaacagtttccgcctatg |
1456434 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 159; E-Value: 1e-84
Query Start/End: Original strand, 32 - 355
Target Start/End: Complemental strand, 1430497 - 1430186
Alignment:
| Q |
32 |
tatgtgaagttgaatctacta---tccaatttgcattaaggtgatgcatgtggtttttgttaaaatcttgtcggtacgtctcctctttctgccattgctc |
128 |
Q |
| |
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||||||||||||||||||||| |||||||||||||| |||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||| |
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|
| T |
1430497 |
tatgtgaagttgaatctactactatccaatttgcattatggtgatgcatgtggttgttgttaaaatcttgtcggtacgtctcttctttctgccattgctc |
1430398 |
T |
|
| Q |
129 |
ccatttttcagccaaaccatcgccttcaagcattctcaccacctcagacatttttggtctttccataggtgaaaattgtgtgcatagtaaagccacttgg |
228 |
Q |
| |
|
||||||||| ||||||||||| ||||| |||||||| |||||||||||||| || |||||||||||||| || |||||||||||||||||| |||||| |
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| T |
1430397 |
ccatttttcggccaaaccatcaccttctagcattctaaccacctcagacatcttaggtctttccataggggacccttgtgtgcatagtaaagcaacttgg |
1430298 |
T |
|
| Q |
229 |
attaacttctctacctcttggattaacttctctacctcatcattatttccctttaattttgcatccaccagtgtttccaacttcttgtctatgagaagtc |
328 |
Q |
| |
|
||||||| ||||||||| | | || |||| ||||||||||| | |||||| || ||||||||||||||||||||| ||||||||| |
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| T |
1430297 |
attaactgctctacctcat---------------catcctcataatttccctttagctctgcatcaacaagtgtttccaacttcttgtctttgagaagtc |
1430213 |
T |
|
| Q |
329 |
ctttaacctggattcaaaacaatgtca |
355 |
Q |
| |
|
|||||||||| |||||||||||||||| |
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|
| T |
1430212 |
ctttaacctgcattcaaaacaatgtca |
1430186 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 32 - 347
Target Start/End: Complemental strand, 1442216 - 1441913
Alignment:
| Q |
32 |
tatgtgaagttgaatctacta---tccaatttgcattaaggtgatgcatgtggtttttgttaaaatcttgtcggtacgtctcctctttctgccattgctc |
128 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||| |||||||||||||||| |||||||||||||||||||||||||| ||||| ||||||||||| |
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|
| T |
1442216 |
tatgtgaagttgaatctactactatccaatttgcattagggtgatgcatgtggttgttgttaaaatcttgtcggtacgtctcttctttttgccattgctc |
1442117 |
T |
|
| Q |
129 |
ccatttttcagccaaaccatcgccttcaagcattctcaccacctcagacatttttggtctttccataggtgaaaattgtgtgcatagtaaagccacttgg |
228 |
Q |
| |
|
||||||||| ||||||||||||||||| |||||||| |||||||||||||| || || ||||||||||| || ||||||||||| |||||| ||||| |
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|
| T |
1442116 |
ccatttttctgccaaaccatcgccttctagcattctaaccacctcagacatcttaggcctttccataggggacccttgtgtgcatattaaagcaacttga |
1442017 |
T |
|
| Q |
229 |
attaacttctctacctcttggattaacttctctacctcatcattatttccctttaattttgcatccaccagtgtttccaacttcttgtctatgagaagtc |
328 |
Q |
| |
|
|||| ||| |||| ||||| | ||||| | |||||||||||| | ||||| ||||||||||||||||| |||||||||||| ||| |
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|
| T |
1442016 |
attagcttttcta---------------tctcttcatcatcgtaatttccctttaactccgcatctaccagtgtttccaactttttgtctatgagatgtc |
1441932 |
T |
|
| Q |
329 |
ctttaacctggattcaaaa |
347 |
Q |
| |
|
||||||||||||||||||| |
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|
| T |
1441931 |
ctttaacctggattcaaaa |
1441913 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 32 - 362
Target Start/End: Complemental strand, 1449623 - 1449305
Alignment:
| Q |
32 |
tatgtgaagttgaat---ctactatccaatttgcattaaggtgatgcatgtggtttttgttaaaatcttgtcggtacgtctcctctttctgccattgctc |
128 |
Q |
| |
|
||||||||||||| | ||||||||||||||| ||||| ||||||||||||||| ||||||||||| |||||| |||||||||||||||||||||||| |
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|
| T |
1449623 |
tatgtgaagttgagtctactactatccaatttgtattaaagtgatgcatgtggttgttgttaaaatcccgtcggttcgtctcctctttctgccattgctc |
1449524 |
T |
|
| Q |
129 |
ccatttttcagccaaaccatcgccttcaagcattctcaccacctcagacatttttggtctttccataggtgaaaattgtgtgcatagtaaagccacttgg |
228 |
Q |
| |
|
||||||||| | ||||||||| ||||| |||||||| || ||||||||||| || || ||||||||||| || |||||||||||||||||| |||||| |
|
|
| T |
1449523 |
ccatttttcggacaaaccatcaccttctagcattctaacaacctcagacatcttaggcctttccataggggacccttgtgtgcatagtaaagcaacttgg |
1449424 |
T |
|
| Q |
229 |
attaacttctctacctcttggattaacttctctacctcatcattatttccctttaattttgcatccaccagtgtttccaacttcttgtctatgagaagtc |
328 |
Q |
| |
|
|||| ||| |||| ||||| | | ||||| ||||||||||| | |||||| || ||||||||||| ||||||||| |||||||| |
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|
| T |
1449423 |
attagcttttcta---------------tctcttcatgatcataatttccctttagctctgcatcaacaagtgtttccaatttcttgtcttggagaagtc |
1449339 |
T |
|
| Q |
329 |
ctttaacctggattcaaaacaatgtcaaacagtt |
362 |
Q |
| |
|
|||||||||| ||||||| ||||||| |||||| |
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|
| T |
1449338 |
ctttaacctgaattcaaagtaatgtcagacagtt |
1449305 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 68 - 338
Target Start/End: Complemental strand, 1436619 - 1436364
Alignment:
| Q |
68 |
ggtgatgcatgtggtttttgttaaaatcttgtcggtacgtctcctctttctgccattgctcccatttttcagccaaaccatcgccttcaagcattctcac |
167 |
Q |
| |
|
||||||||||| |||| ||| |||||||||||| |||| |||| ||||||||||||||| ||||||||| ||||||||||||||||| ||||||||||| |
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|
| T |
1436619 |
ggtgatgcatgcggttgttgctaaaatcttgtcagtacttctcttctttctgccattgcatccatttttcggccaaaccatcgccttctagcattctcac |
1436520 |
T |
|
| Q |
168 |
cacctcagacatttttggtctttccataggtgaaaattgtgtgcatagtaaagccacttggattaacttctctacctcttggattaacttctctacctca |
267 |
Q |
| |
|
|||||||||||| || |||||||||||||| || |||||||||||||||||| ||||||||||||| ||||||||| | | ||| |
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|
| T |
1436519 |
cacctcagacatcttaggtctttccataggggacccttgtgtgcatagtaaagcaacttggattaactgctctacctcat---------------catca |
1436435 |
T |
|
| Q |
268 |
tcattatttccctttaattttgcatccaccagtgtttccaacttcttgtctatgagaagtcctttaacctg |
338 |
Q |
| |
|
|||| |||||||||||| | |||||| ||||||||||| |||||||| ||| | ||||||||||||||||| |
|
|
| T |
1436434 |
tcataatttccctttaactctgcatctaccagtgtttcgaacttcttctctttaagaagtcctttaacctg |
1436364 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 51 - 138
Target Start/End: Complemental strand, 1449797 - 1449710
Alignment:
| Q |
51 |
tatccaatttgcattaaggtgatgcatgtggtttttgttaaaatcttgtcggtacgtctcctctttctgccattgctcccatttttca |
138 |
Q |
| |
|
|||||||||||||||| ||||||||||| |||| ||||||||||||||||| | | |||| ||||||||||||||||||||||||||| |
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|
| T |
1449797 |
tatccaatttgcattagggtgatgcatgcggttgttgttaaaatcttgtcgatgcatctcttctttctgccattgctcccatttttca |
1449710 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 1456829 - 1456779
Alignment:
| Q |
1 |
ggctcgatatgtgaagttgaatctacttgggtatgtgaagttgaatctact |
51 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
1456829 |
ggctcgatatgtgaagttgaatctacttggatatgtgaagttgaatctact |
1456779 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 265 - 314
Target Start/End: Original strand, 21017416 - 21017465
Alignment:
| Q |
265 |
tcatcattatttccctttaattttgcatccaccagtgtttccaacttctt |
314 |
Q |
| |
|
||||||| |||||||||||| | |||||||||||||||||| |||||||| |
|
|
| T |
21017416 |
tcatcataatttccctttaactctgcatccaccagtgtttcaaacttctt |
21017465 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 127 - 245
Target Start/End: Original strand, 43826024 - 43826142
Alignment:
| Q |
127 |
tcccatttttcagccaaaccatcgccttcaagcattctcaccacctcagacatttttggtctttccataggtgaaaattgtgtgcatagtaaagccactt |
226 |
Q |
| |
|
|||||| |||| ||||| ||||||||||||||||||||||| || || ||||| ||||| | |||||||| ||| ||| |||||||| | || || | |
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|
| T |
43826024 |
tcccatctttctgccaagccatcgccttcaagcattctcactacatctgacatctttggccggtccataggcgaaccttgcgtgcatagcagcgcaacct |
43826123 |
T |
|
| Q |
227 |
ggattaacttctctacctc |
245 |
Q |
| |
|
||||||||| |||||||| |
|
|
| T |
43826124 |
ggattaactgttctacctc |
43826142 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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