View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3888_low_6 (Length: 347)
Name: NF3888_low_6
Description: NF3888
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3888_low_6 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 316; Significance: 1e-178; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 316; E-Value: 1e-178
Query Start/End: Original strand, 8 - 331
Target Start/End: Original strand, 41646012 - 41646335
Alignment:
| Q |
8 |
cgaagaatatgcacattggagctgttgagtgttaaacgtgtgagatcattccaatcaattcgagaggaagaggtatcaaaattaattagatatctttcta |
107 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41646012 |
cgaaaaatatgcacattggagctgttgagtgttaaacgtgtgagatcattccaatcaattcgagaggaagaggtatcaaaattaattagatatctttcta |
41646111 |
T |
|
| Q |
108 |
taaacaaggggtctacaatcaacttcacggatgaaattttagctatgacatataacatcgcttcaagggcatcttttggtgataattgtaaggacaaaga |
207 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41646112 |
taaacaaggggtctacaatcaacttcacagatgaaattttagctatgacatataacatcgcttcaagggcatcttttggtgataattgtaaggacaaaga |
41646211 |
T |
|
| Q |
208 |
agcatatatcttgttcatgaaggaatctatgtcggtggctgagagtttcaccattcataatttgttcccatcccagcattggctacatgtgattactgga |
307 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41646212 |
agcatatatcttgttcatgaaggaatctatgtcggtggctgagagtttcaccattcataatttgttcccatcccagcattggctacatgtgattactgga |
41646311 |
T |
|
| Q |
308 |
atgatgcataaattgaagagattg |
331 |
Q |
| |
|
|||||||||||||||||||||||| |
|
|
| T |
41646312 |
atgatgcataaattgaagagattg |
41646335 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 13 - 331
Target Start/End: Original strand, 41653219 - 41653537
Alignment:
| Q |
13 |
aatatgcacattggagctgttgagtgttaaacgtgtgagatcattccaatcaattcgagaggaagaggtatcaaaattaattagatatctttctataaac |
112 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| || ||||||||||||||| ||||||| ||| |
|
|
| T |
41653219 |
aatatgcacattggagctgttgagtgttaaacgtgtgagatcataccaatcaattcgagaggaagaggtgtcgaaattaattagatatatttctattaac |
41653318 |
T |
|
| Q |
113 |
aaggggtctacaatcaacttcacggatgaaattttagctatgacatataacatcgcttcaagggcatcttttggtgataattgtaaggacaaagaagcat |
212 |
Q |
| |
|
| || ||||| |||||| | || |||||||||||| || ||||||||| |||| ||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
41653319 |
actggatctaccatcaaccttacagatgaaattttatctttgacatatagcatcacttcaagggcatcttttggtgataattgtaaggacaatgaagcat |
41653418 |
T |
|
| Q |
213 |
atatcttgttcatgaaggaatctatgtcggtggctgagagtttcaccattcataatttgttcccatcccagcattggctacatgtgattactggaatgat |
312 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||| || ||||||||||||||||||||||||| ||||||| | |
|
|
| T |
41653419 |
atatcttgttcatgaaggaatctatgtctgtggctgagagtttcagtattcataatttgtttccctcccagcattggctacatgtgattagtggaatggt |
41653518 |
T |
|
| Q |
313 |
gcataaattgaagagattg |
331 |
Q |
| |
|
||||||||||||||||||| |
|
|
| T |
41653519 |
gcataaattgaagagattg |
41653537 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 13 - 326
Target Start/End: Complemental strand, 41623789 - 41623476
Alignment:
| Q |
13 |
aatatgcacattggagctgttgagtgttaaacgtgtgagatcattccaatcaattcgagaggaagaggtatcaaaattaattagatatctttctataaac |
112 |
Q |
| |
|
|||||||||||||||| ||||||||| |||||||| || |||||||||||||||||||||||||||| | |||||||||||||||||| ||||||||||| |
|
|
| T |
41623789 |
aatatgcacattggagttgttgagtgctaaacgtgcgaaatcattccaatcaattcgagaggaagagttgtcaaaattaattagatatatttctataaac |
41623690 |
T |
|
| Q |
113 |
aaggggtctacaatcaacttcacggatgaaattttagctatgacatataacatcgcttcaagggcatcttttggtgataattgtaaggacaaagaagcat |
212 |
Q |
| |
|
| || ||||| |||||| | || |||||||| | | ||||||||||||||||| |||||||||| ||||||||||||| || || || ||||||||| |
|
|
| T |
41623689 |
actggatctactatcaaccttacagatgaaatatcatctatgacatataacatcatttcaagggcaacttttggtgataaatgcaatgatcaagaagcat |
41623590 |
T |
|
| Q |
213 |
atatcttgttcatgaaggaatctatgtcggtggctgagagtttcaccattcataatttgttcccatcccagcattggctacatgtgattactggaatgat |
312 |
Q |
| |
|
|||||||||||| ||||||| || ||||| ||||||| ||| || | ||||||||| || || || ||||||||||||||||||| ||||||| | |
|
|
| T |
41623589 |
ttatcttgttcatcaaggaatgtacaagggtggttgagagtgtcaatatccctaatttgtttccctctcaacattggctacatgtgattagtggaatggt |
41623490 |
T |
|
| Q |
313 |
gcataaattgaaga |
326 |
Q |
| |
|
||||||||||||| |
|
|
| T |
41623489 |
acataaattgaaga |
41623476 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 41 - 93
Target Start/End: Original strand, 41463649 - 41463701
Alignment:
| Q |
41 |
aaacgtgtgagatcattccaatcaattcgagaggaagaggtatcaaaattaat |
93 |
Q |
| |
|
||||||||||||||||||||||||||| |||| |||||||||||||| ||||| |
|
|
| T |
41463649 |
aaacgtgtgagatcattccaatcaattagagaagaagaggtatcaaatttaat |
41463701 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 90; Significance: 2e-43; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 13 - 310
Target Start/End: Original strand, 2432037 - 2432334
Alignment:
| Q |
13 |
aatatgcacattggagctgttgagtgttaaacgtgtgagatcattccaatcaattcgagaggaagaggtatcaaaattaattagatatctttctataaac |
112 |
Q |
| |
|
|||||||||||| || |||||||||| |||||||||||||||||||||||||||| ||||||||||||| | ||| |||| |||| | ||||||||||| |
|
|
| T |
2432037 |
aatatgcacattagaactgttgagtgctaaacgtgtgagatcattccaatcaattagagaggaagaggtgttaaatttaacaagatgtatttctataaac |
2432136 |
T |
|
| Q |
113 |
aaggggtctacaatcaacttcacggatgaaattttagctatgacatataacatcgcttcaagggcatcttttggtgataattgtaaggacaaagaagcat |
212 |
Q |
| |
|
| || ||| |||||| |||| ||||||||||| ||||| |||||||||| ||| |||||| ||||||||||||| || ||||| ||||||||| |
|
|
| T |
2432137 |
actggaactattatcaacctcactcatgaaattttatctatgcaatataacatcatttctagggcaacttttggtgataaatgcaaggagcaagaagcat |
2432236 |
T |
|
| Q |
213 |
atatcttgttcatgaaggaatctatgtcggtggctgagagtttcaccattcataatttgttcccatcccagcattggctacatgtgattactggaatg |
310 |
Q |
| |
|
||| | |||||| |||||| |||| | |||| |||||||||| | ||||||||| || ||||| |||||| |||||||||||| ||||||| |
|
|
| T |
2432237 |
ataccaagttcatcaaggaaactataaagttggcagagagtttcagtgtcactaatttgtttccctcccaacattggttacatgtgattagtggaatg |
2432334 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 56; Significance: 4e-23; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 17 - 212
Target Start/End: Complemental strand, 12439445 - 12439250
Alignment:
| Q |
17 |
tgcacattggagctgttgagtgttaaacgtgtgagatcattccaatcaattcgagaggaagaggtatcaaaattaattagatatctttctataaacaagg |
116 |
Q |
| |
|
||||||||||||||||||||| || |||||||||||||||||||||||| | |||||||||| ||||| || |||| | || ||||| ||||| | |
|
|
| T |
12439445 |
tgcacattggagctgttgagtacgaaccgtgtgagatcattccaatcaattaggaaggaagaggtgtcaaattttattaaaaatatttcttcaaacactg |
12439346 |
T |
|
| Q |
117 |
ggtctacaatcaacttcacggatgaaattttagctatgacatataacatcgcttcaagggcatcttttggtgataattgtaaggacaaagaagcat |
212 |
Q |
| |
|
| |||| ||||||| ||| ||||||||||| || || |||||||||| |||||| ||| ||||||||||||| || ||||| ||||||||| |
|
|
| T |
12439345 |
gatctaaaatcaacctcagtcatgaaattttatctttgtcatataacattatttcaagagcagcttttggtgataaatgcaaggagcaagaagcat |
12439250 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University