View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3889_high_12 (Length: 278)
Name: NF3889_high_12
Description: NF3889
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3889_high_12 |
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Alignment Details
Target: chr1 (Bit Score: 240; Significance: 1e-133; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 1 - 264
Target Start/End: Original strand, 5486798 - 5487061
Alignment:
| Q |
1 |
tccagaatgcgaggttttaatatctatcaaaccaaaaacgattttcgacgacaccagaggaacaaactggtaagggtttaagaaagaatgttccacaaca |
100 |
Q |
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| T |
5486798 |
tccagaatgcgaggttttaatatctatcaaaccaaaaacaattttcgacgacaccagaggaacaaacccgtaagggtttaagaaagaatgttccacagca |
5486897 |
T |
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| Q |
101 |
gcgccaccgtttaccttactttgatctaatataataaataatactatcttttctttaatgaggttttttataagcaaaatgattgtattactttgagttc |
200 |
Q |
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| T |
5486898 |
gcgccaccgtttaccttactttgatctaatataataaatgatactatcttttctttaatgaggttttttataagcaaaatgattttattactttgagttc |
5486997 |
T |
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| Q |
201 |
aagggatactcaaacccacaacaaagaatcaagtcaaatacattgaaaacaacatagtggatta |
264 |
Q |
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| T |
5486998 |
aagggatactcaaacccacaacaaagaatcaagtcaaatacattgaaaacaacatagtggatta |
5487061 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 208 - 261
Target Start/End: Complemental strand, 23331315 - 23331262
Alignment:
| Q |
208 |
actcaaacccacaacaaagaatcaagtcaaatacattgaaaacaacatagtgga |
261 |
Q |
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| T |
23331315 |
actcaaacgtacaaaaaagaatcaagtcaaatacattgaaaacaagatagtgga |
23331262 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 166 - 252
Target Start/End: Original strand, 9631021 - 9631106
Alignment:
| Q |
166 |
ttttataagcaaaatgattgtattactttgagttcaagggatactcaaacccacaacaaagaatcaagtcaaatacattgaaaacaa |
252 |
Q |
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| T |
9631021 |
ttttatgagcaaaatgattttattactttgagtacgagggatattcaaacctac-acaaagaatcaagtcgaatgcatttaaaacaa |
9631106 |
T |
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