View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3889_high_13 (Length: 258)
Name: NF3889_high_13
Description: NF3889
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3889_high_13 |
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Alignment Details
Target: chr3 (Bit Score: 159; Significance: 9e-85; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 159; E-Value: 9e-85
Query Start/End: Original strand, 81 - 243
Target Start/End: Complemental strand, 30702334 - 30702172
Alignment:
| Q |
81 |
cacatacacgttctcagtgttagaaagataaggtaacaaaaacaataatggcaaagcaagagaacagtagcagaagcagaagctcaagatggtccctcaa |
180 |
Q |
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| T |
30702334 |
cacatacacgttctcagtgttagcaagataaggtaacaaaaacaataatggcaaagcaagagaacagtagcagaagcagaagctcaagatggtccctcaa |
30702235 |
T |
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| Q |
181 |
gggattcacagctcttgtcaccggcggaactcgtgggatcggtcatgctatcgtagaggaact |
243 |
Q |
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| T |
30702234 |
gggattcacagctcttgtcaccggcggaactcgtgggatcggtcatgctatcgtagaggaact |
30702172 |
T |
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Target: chr3; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 149 - 243
Target Start/End: Complemental strand, 30719817 - 30719723
Alignment:
| Q |
149 |
agcagaagcagaagctcaagatggtccctcaagggattcacagctcttgtcaccggcggaactcgtgggatcggtcatgctatcgtagaggaact |
243 |
Q |
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| T |
30719817 |
agcagtagcagaagctcaagatggtccctcaagggattcactgctctcgtcaccggcggaacacgtggaatcggacatgctatcgtggaagaact |
30719723 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 162 - 243
Target Start/End: Complemental strand, 30707438 - 30707357
Alignment:
| Q |
162 |
gctcaagatggtccctcaagggattcacagctcttgtcaccggcggaactcgtgggatcggtcatgctatcgtagaggaact |
243 |
Q |
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| T |
30707438 |
gctcaagatggtctctcaagggaactactgctctagttactggtggaactcgtggaatcggtcatgctgtggtggaggaact |
30707357 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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