View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3889_high_2 (Length: 645)

Name: NF3889_high_2
Description: NF3889
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3889_high_2
NF3889_high_2
[»] chr8 (14 HSPs)
chr8 (3-457)||(479173-479627)
chr8 (519-630)||(479689-479800)
chr8 (1-123)||(43319129-43319252)
chr8 (241-443)||(473937-474139)
chr8 (268-442)||(466498-466672)
chr8 (1-92)||(40589814-40589905)
chr8 (524-616)||(466743-466835)
chr8 (241-325)||(454763-454850)
chr8 (9-123)||(7126170-7126285)
chr8 (337-433)||(445767-445863)
chr8 (376-442)||(454890-454956)
chr8 (529-609)||(455041-455121)
chr8 (528-572)||(474232-474276)
chr8 (524-623)||(446009-446108)
[»] chr2 (4 HSPs)
chr2 (268-445)||(27493754-27493931)
chr2 (1-119)||(39829044-39829163)
chr2 (1-123)||(87304-87427)
chr2 (529-614)||(27493536-27493624)
[»] chr1 (1 HSPs)
chr1 (1-123)||(5608268-5608391)
[»] chr7 (2 HSPs)
chr7 (21-123)||(3746196-3746299)
chr7 (1-81)||(16096329-16096409)
[»] chr5 (2 HSPs)
chr5 (1-123)||(20203907-20204030)
chr5 (9-121)||(8387030-8387143)
[»] chr4 (8 HSPs)
chr4 (9-123)||(26423287-26423402)
chr4 (12-122)||(28425143-28425254)
chr4 (1-123)||(28538901-28539024)
chr4 (1-123)||(56062949-56063072)
chr4 (1-120)||(55733960-55734080)
chr4 (6-123)||(2063719-2063837)
chr4 (17-123)||(51260659-51260766)
chr4 (1-123)||(49950270-49950393)
[»] chr6 (1 HSPs)
chr6 (1-122)||(11732762-11732884)


Alignment Details
Target: chr8 (Bit Score: 379; Significance: 0; HSPs: 14)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 379; E-Value: 0
Query Start/End: Original strand, 3 - 457
Target Start/End: Original strand, 479173 - 479627
Alignment:
Q  3 ataacgctgacctgctgcccatgtccaattgtccacctaaaaccatgtaaaagtagctgacgcgaagtccaaatactccgccaaacaaagtt-gggttat 101  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||| ||||| | |||||||    
T  479173 ataacgctgacctgctgcccatgtccaattgtccacctagaaccatgtaaaagtagctgacacgaagtccaaatactccgccaagcaaagctcgggttat 479272  T
Q  102 taccgagtttagcacccaaaaagaatgatataattgagactactaaataagttacnnnnnnnagtaatatttaaattgaacgaagaatatatataataaa 201  Q
    ||||||||||||||||||||| ||||||||||||||||| |||||||||||||||       ||||||||||||||||||| ||||||||||||||||||    
T  479273 taccgagtttagcacccaaaa-gaatgatataattgagattactaaataagttactttttttagtaatatttaaattgaacaaagaatatatataataaa 479371  T
Q  202 tttcttattctcttcacacagcataagcatcgtgtgtaatttggaaagcaaagatgggatgtttagacatggagtactaccttccaataatggctatggt 301  Q
    |||||| ||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  479372 tttcttcttctcttcacacaacataagcatcgtgtataatttggaaagcaaagatgggatgtttagacatggagtactaccttccaataatggctatggt 479471  T
Q  302 gttgatagagtttatatatgcaggtttgggtattggcacaagaattgtatttttgcagggtttgagccctaggatatttgtagtgtaccgtcatgctatt 401  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  479472 gttgatagagtttatatatgcaggtttgggtattggcacaagaattgtatttttgcagggtttgagccctaggatatttgtagtgtaccgtcatgctatt 479571  T
Q  402 gcaaccattcttcttgctcctgttgcttatttttccgggtacttctctttcattgc 457  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  479572 gcaaccattcttcttgctcctgttgcttatttttccgggtacttctatttcattgc 479627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 112; E-Value: 3e-56
Query Start/End: Original strand, 519 - 630
Target Start/End: Original strand, 479689 - 479800
Alignment:
Q  519 gtttcttgataggagaaattctggctcttattccttaaatttaaggagtttttctttgttattcttaacctcactaattgggttagtttccattctctag 618  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  479689 gtttcttgataggagaaattctggctcttattccttaaatttaaggagtttttctttgttattcttaacctcactaattgggttagtttccattctctag 479788  T
Q  619 taataataatat 630  Q
    ||||||||||||    
T  479789 taataataatat 479800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 96; E-Value: 9e-47
Query Start/End: Original strand, 1 - 123
Target Start/End: Original strand, 43319129 - 43319252
Alignment:
Q  1 tcataacgctgacctgctgcccatgtccaattgtccacctaaaaccatgtaaaagtagctgacgcgaagtccaaatactccgccaaacaaag-ttgggtt 99  Q
    ||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| | |||||    
T  43319129 tcataacgctgacatgcttcccatgtccaattgtccacctaaaaccatgtaaaagtagctgacgcgaagtccaaatactccgccaagcaaagctcgggtt 43319228  T
Q  100 attaccgagtttagcacccaaaaa 123  Q
    |||| |||||||||||||||||||    
T  43319229 attatcgagtttagcacccaaaaa 43319252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 241 - 443
Target Start/End: Original strand, 473937 - 474139
Alignment:
Q  241 tttggaaagcaaagatgggatgtttagacatggagtactaccttccaataatggctatggtgttgatagagtttatatatgcaggtttgggtattggcac 340  Q
    ||||||||||||||||||||||||||||||||||||| ||  | |||||||||| |||||| |||||| ||||||||||||||||| ||  | ||||||     
T  473937 tttggaaagcaaagatgggatgtttagacatggagtattatatgccaataatggttatggtattgatacagtttatatatgcaggtatgaatcttggcat 474036  T
Q  341 aagaattgtatttttgcagggtttgagccctaggatatttgtagtgtaccgtcatgctattgcaaccattcttcttgctcctgttgcttatttttccggg 440  Q
    |||| |     ||||| ||||| |||| || |   |||||||||| ||||||  |||| ||||||||||| ||||||||||  |||||||||| || |||    
T  474037 aagagtcacccttttggagggtatgagtcccaacgtatttgtagtataccgtagtgcttttgcaaccatttttcttgctcccattgcttatttctctggg 474136  T
Q  441 tac 443  Q
    |||    
T  474137 tac 474139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 268 - 442
Target Start/End: Original strand, 466498 - 466672
Alignment:
Q  268 acatggagtactaccttccaataatggctatggtgttgatagagtttatatatgcaggtttgggtattggcacaagaattgtatttttgcagggtttgag 367  Q
    |||||||||||||||| |||||||| | |||| |||||||| |||| |||| |||||||  |  | ||||||||||||| | | ||||| ||||| ||||    
T  466498 acatggagtactacctgccaataatagttatgttgttgatacagttaatatttgcaggtcagactcttggcacaagaatggcacttttggagggtatgag 466597  T
Q  368 ccctaggatatttgtagtgtaccgtcatgctattgcaaccattcttcttgctcctgttgcttatttttccgggta 442  Q
     || |||||||||||||| ||||||  |||| ||||||||||| ||||||||||  | |||||||| || |||||    
T  466598 tccaaggatatttgtagtataccgtagtgcttttgcaaccattgttcttgctcccctcgcttatttatcagggta 466672  T

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Target: chr8; HSP #6
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 1 - 92
Target Start/End: Original strand, 40589814 - 40589905
Alignment:
Q  1 tcataacgctgacctgctgcccatgtccaattgtccacctaaaaccatgtaaaagtagctgacgcgaagtccaaatactccgccaaacaaag 92  Q
    |||| ||||||||||||||||||| ||| |||||||||||| | ||||||||||||| ||||||| || ||||||||||||||||| |||||    
T  40589814 tcatcacgctgacctgctgcccatttcctattgtccacctacatccatgtaaaagtatctgacgcaaattccaaatactccgccaagcaaag 40589905  T

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Target: chr8; HSP #7
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 524 - 616
Target Start/End: Original strand, 466743 - 466835
Alignment:
Q  524 ttgataggagaaattctggctcttattccttaaatttaaggagtttttctttgttattcttaacctcactaattgggttagtttccattctct 616  Q
    |||| |||||||| |||||||| |||||||| ||||||||||||||||| ||| | ||| | ||||||||||||||||| |||||||||||||    
T  466743 ttgacaggagaaactctggctcatattccttgaatttaaggagtttttccttgattttcatgacctcactaattgggtttgtttccattctct 466835  T

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Target: chr8; HSP #8
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 241 - 325
Target Start/End: Original strand, 454763 - 454850
Alignment:
Q  241 tttggaaagcaaagatgggat---gtttagacatggagtactaccttccaataatggctatggtgttgatagagtttatatatgcagg 325  Q
    ||||||||| |||||||||||   |||||||||||||||||||||||||| || |||| |||||||||| | ||||||||||| ||||    
T  454763 tttggaaagtaaagatgggatattgtttagacatggagtactaccttccagtattggccatggtgttgacacagtttatatattcagg 454850  T

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Target: chr8; HSP #9
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 9 - 123
Target Start/End: Complemental strand, 7126285 - 7126170
Alignment:
Q  9 ctgacctgctgcccatgtccaattgtccacctaaaaccatgtaaaagtagctgacgcgaagtccaaatactccgccaaacaaagtt-gggttattaccga 107  Q
    ||||| || |||||| ||||||| ||||| ||| | |||| ||||||||  || |||||| |||||||||| |||||| ||||| | |||||||||||||    
T  7126285 ctgacatgttgcccacgtccaatcgtccatctacacccatataaaagtaaatgtcgcgaattccaaatacttcgccaagcaaagctcgggttattaccga 7126186  T
Q  108 gtttagcacccaaaaa 123  Q
    ||||||||||| ||||    
T  7126185 gtttagcaccctaaaa 7126170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 337 - 433
Target Start/End: Original strand, 445767 - 445863
Alignment:
Q  337 gcacaagaattgtatttttgcagggtttgagccctaggatatttgtagtgtaccgtcatgctattgcaaccattcttcttgctcctgttgcttattt 433  Q
    |||||||||||| | ||||| ||||| |||||||   | |||||||| |||||||| ||||| ||||||||||| ||||||||||  ||||||||||    
T  445767 gcacaagaattgcacttttggagggtatgagcccggcggtatttgtaatgtaccgtaatgcttttgcaaccatttttcttgctccaattgcttattt 445863  T

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Target: chr8; HSP #11
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 376 - 442
Target Start/End: Original strand, 454890 - 454956
Alignment:
Q  376 tatttgtagtgtaccgtcatgctattgcaaccattcttcttgctcctgttgcttatttttccgggta 442  Q
    ||||| |||| |||||||||||| ||||||||||||||||||||||  |||||||||| || |||||    
T  454890 tatttatagtttaccgtcatgcttttgcaaccattcttcttgctcccattgcttatttatctgggta 454956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 529 - 609
Target Start/End: Original strand, 455041 - 455121
Alignment:
Q  529 aggagaaattctggctcttattccttaaatttaaggagtttttctttgttattcttaacctcactaattgggttagtttcc 609  Q
    |||||||| ||| |||||||||||||||||||||  |||||||| | | | ||| | ||||||||||||||||| ||||||    
T  455041 aggagaaactctcgctcttattccttaaatttaacaagtttttcctggattttcatgacctcactaattgggtttgtttcc 455121  T

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Target: chr8; HSP #13
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 528 - 572
Target Start/End: Original strand, 474232 - 474276
Alignment:
Q  528 taggagaaattctggctcttattccttaaatttaaggagtttttc 572  Q
    ||||||||| |||| ||||||||||||||||||||||||||||||    
T  474232 taggagaaactctgcctcttattccttaaatttaaggagtttttc 474276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 524 - 623
Target Start/End: Original strand, 446009 - 446108
Alignment:
Q  524 ttgataggagaaattctggctcttattccttaaatttaaggagtttttctttgttattcttaacctcactaattgggttagtttccattctctagtaata 623  Q
    |||| |||||||| |||| ||| || |||||||| |||||||||||||| | | ||||| | || ||||||||| |||| |||| |||| ||||||||||    
T  446009 ttgacaggagaaactctgcctcctactccttaaacttaaggagtttttcctggatattcatgacttcactaattaggtttgttttcattttctagtaata 446108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 70; Significance: 3e-31; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 268 - 445
Target Start/End: Complemental strand, 27493931 - 27493754
Alignment:
Q  268 acatggagtactaccttccaataatggctatggtgttgatagagtttatatatgcaggtttgggtattggcacaagaattgtatttttgcagggtttgag 367  Q
    |||||||||||||| | |||||||||| |||| | |||||| |||| |||||| |||| |||  | |||| |||||||||||| ||||| ||||||||||    
T  27493931 acatggagtactacttaccaataatggttatgttattgatacagttaatatattcaggcttgactcttggtacaagaattgtacttttggagggtttgag 27493832  T
Q  368 ccctaggatatttgtagtgtaccgtcatgctattgcaaccattcttcttgctcctgttgcttatttttccgggtactt 445  Q
     || | | |||||||||| || ||  ||||| ||||||||||| |||||||||||||||||||||| || ||||||||    
T  27493831 tccaatggtatttgtagtatatcgctatgcttttgcaaccatttttcttgctcctgttgcttatttatcagggtactt 27493754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 68; E-Value: 5e-30
Query Start/End: Original strand, 1 - 119
Target Start/End: Original strand, 39829044 - 39829163
Alignment:
Q  1 tcataacgctgacctgctgcccatgtccaattgtccacctaaaaccatgtaaaagtagctgacgcgaagtccaaatactccgccaaacaaag-ttgggtt 99  Q
    |||| ||||||||||| ||||||| |||||| ||||| ||| |||||| |||||||| ||||| |||| ||||||||||||||||| ||||| |||||||    
T  39829044 tcatcacgctgacctgttgcccatctccaatcgtccatctacaaccatataaaagtaactgacacgaattccaaatactccgccaagcaaagcttgggtt 39829143  T
Q  100 attaccgagtttagcaccca 119  Q
    ||||||||||||||||||||    
T  39829144 attaccgagtttagcaccca 39829163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 1 - 123
Target Start/End: Complemental strand, 87427 - 87304
Alignment:
Q  1 tcataacgctgacctgctgcccatgtccaattgtccacctaaaaccatgtaaaagtagctgacgcgaagtccaaatactccgccaaacaaag-ttgggtt 99  Q
    |||| ||||| ||||||||||||| ||||| ||| |||||| | ||||||||||||| |||||||||| |||| |||||||||||| ||||| |   |||    
T  87427 tcatcacgctaacctgctgcccatttccaactgttcacctacatccatgtaaaagtatctgacgcgaattccatatactccgccaagcaaagctcaagtt 87328  T
Q  100 attaccgagtttagcacccaaaaa 123  Q
    ||||||||||||||||||||||||    
T  87327 attaccgagtttagcacccaaaaa 87304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 529 - 614
Target Start/End: Complemental strand, 27493624 - 27493536
Alignment:
Q  529 aggagaaattctggctctt---attccttaaatttaaggagtttttctttgttattcttaacctcactaattgggttagtttccattct 614  Q
    ||||||||||||||||| |   ||||||||||||||| ||||||||||| | ||||| | || |||||| ||||||| ||||| |||||    
T  27493624 aggagaaattctggctcctcccattccttaaatttaaagagtttttcttggatattcatcacttcactagttgggtttgtttctattct 27493536  T

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Target: chr1 (Bit Score: 64; Significance: 1e-27; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 1 - 123
Target Start/End: Complemental strand, 5608391 - 5608268
Alignment:
Q  1 tcataacgctgacctgctgcccatgtccaattgtccacctaaaaccatgtaaaagtagctgacgcgaagtccaaatactccgccaaacaaag-ttgggtt 99  Q
    |||| ||||||||||||||||||| ||||| |||||||||| | ||||||||||||| |||||||||| |||||||||| | |||| ||||| |  ||||    
T  5608391 tcatcacgctgacctgctgcccatttccaactgtccacctacatccatgtaaaagtatctgacgcgaattccaaatacttctccaagcaaagctcaggtt 5608292  T
Q  100 attaccgagtttagcacccaaaaa 123  Q
    |||||| |||||||||||||||||    
T  5608291 attaccaagtttagcacccaaaaa 5608268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 60; Significance: 3e-25; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 21 - 123
Target Start/End: Complemental strand, 3746299 - 3746196
Alignment:
Q  21 ccatgtccaattgtccacctaaaaccatgtaaaagtagctgacgcgaagtccaaatactccgccaaacaaag-ttgggttattaccgagtttagcaccca 119  Q
    ||||||||||||||||||||| ||| || |||||||| |||||||||| ||||||||||||||||| ||||| | ||||||| ||||||||||||||| |    
T  3746299 ccatgtccaattgtccacctacaacaatataaaagtaactgacgcgaattccaaatactccgccaagcaaagctagggttataaccgagtttagcaccaa 3746200  T
Q  120 aaaa 123  Q
    ||||    
T  3746199 aaaa 3746196  T

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Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 1 - 81
Target Start/End: Complemental strand, 16096409 - 16096329
Alignment:
Q  1 tcataacgctgacctgctgcccatgtccaattgtccacctaaaaccatgtaaaagtagctgacgcgaagtccaaatactcc 81  Q
    |||| |||||||||||||  |||| |||||||||||||||| | |||| ||| |||| ||| | |||| ||||||||||||    
T  16096409 tcatcacgctgacctgctatccatttccaattgtccacctacatccatataacagtaactggcacgaattccaaatactcc 16096329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 56; Significance: 7e-23; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 1 - 123
Target Start/End: Complemental strand, 20204030 - 20203907
Alignment:
Q  1 tcataacgctgacctgctgcccatgtccaattgtccacctaaaaccatgtaaaagtagctgacgcgaagtccaaatactccgccaaacaaag-ttgggtt 99  Q
    |||| |||||||  |||||||||| ||||| |||||||||| | || | |||||||| |||||||||| |||||||||||| |||| ||||| | |||||    
T  20204030 tcatcacgctgatttgctgcccatttccaaatgtccacctacatccgtataaaagtaactgacgcgaattccaaatactcctccaagcaaagatcgggtt 20203931  T
Q  100 attaccgagtttagcacccaaaaa 123  Q
    || |||||||||||||||||||||    
T  20203930 ataaccgagtttagcacccaaaaa 20203907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 9 - 121
Target Start/End: Complemental strand, 8387143 - 8387030
Alignment:
Q  9 ctgacctgctgcccatgtccaattgtccacctaaaaccatgtaaaagtagctgacgcgaagtccaaatactccgccaaacaaagtt-gggttattaccga 107  Q
    |||||||||||||||| ||||||||| || ||| | |||| ||||||||  ||||||||| |||||||||| | |||| ||||||| |||||||  ||||    
T  8387143 ctgacctgctgcccatttccaattgtgcatctacatccatataaaagtaattgacgcgaattccaaatacttctccaagcaaagttcgggttatatccga 8387044  T
Q  108 gtttagcacccaaa 121  Q
    |||||| |||||||    
T  8387043 gtttaggacccaaa 8387030  T

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Target: chr4 (Bit Score: 56; Significance: 7e-23; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 9 - 123
Target Start/End: Original strand, 26423287 - 26423402
Alignment:
Q  9 ctgacctgctgcccatgtccaattgtccacctaaaaccatgtaaaagtagctgacgcgaagtccaaatactccgccaaac-aaagttgggttattaccga 107  Q
    ||||| || ||||||| |||||| ||||| ||| |||||| |||||||| |||||||||| ||||||||||||||||| | ||| ||||||||||||  |    
T  26423287 ctgacatgttgcccatctccaatcgtccatctacaaccatataaaagtaactgacgcgaattccaaatactccgccaaccaaaacttgggttattactaa 26423386  T
Q  108 gtttagcacccaaaaa 123  Q
    ||||||||||||||||    
T  26423387 gtttagcacccaaaaa 26423402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 12 - 122
Target Start/End: Complemental strand, 28425254 - 28425143
Alignment:
Q  12 acctgctgcccatgtccaattgtccacctaaaaccatgtaaaagtagctgacgcgaagtccaaatactccgccaaacaaag-ttgggttattaccgagtt 110  Q
    ||||| ||||||| |||||| ||||| ||| ||| || |||||||| |||||||||| ||||||||||||||||| ||||| ||||| ||||||||||||    
T  28425254 acctgttgcccatctccaatcgtccatctacaactatataaaagtaactgacgcgaattccaaatactccgccaagcaaagcttgggctattaccgagtt 28425155  T
Q  111 tagcacccaaaa 122  Q
    |||||| |||||    
T  28425154 tagcactcaaaa 28425143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 1 - 123
Target Start/End: Original strand, 28538901 - 28539024
Alignment:
Q  1 tcataacgctgacctgctgcccatgtccaattgtccacctaaaaccatgtaaaagtagctgacgcgaagtccaaatactccgccaaacaaagtt-gggtt 99  Q
    |||| ||||||||||||||||||| ||||| |||||| ||| | |||| |||||||| |||| | ||| ||||||||||||||||| |||| || |||||    
T  28538901 tcatcacgctgacctgctgcccatttccaactgtccatctacatccatataaaagtaactgatgtgaattccaaatactccgccaagcaaaattcgggtt 28539000  T
Q  100 attaccgagtttagcacccaaaaa 123  Q
    || ||||||| |||||||||||||    
T  28539001 ataaccgagtctagcacccaaaaa 28539024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 1 - 123
Target Start/End: Complemental strand, 56063072 - 56062949
Alignment:
Q  1 tcataacgctgacctgctgcccatgtccaattgtccacctaaaaccatgtaaaagtagctgacgcgaagtccaaatactccgccaaacaaag-ttgggtt 99  Q
    |||| ||||||||||||||||||| | |||||||||| ||| | |||| |||||||| |||||||||| ||||||||||||  ||| ||||| | |||||    
T  56063072 tcatcacgctgacctgctgcccattttcaattgtccatctacatccatataaaagtaactgacgcgaattccaaatactccttcaagcaaagctcgggtt 56062973  T
Q  100 attaccgagtttagcacccaaaaa 123  Q
    ||  ||||||||||||||||||||    
T  56062972 atatccgagtttagcacccaaaaa 56062949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 1 - 120
Target Start/End: Complemental strand, 55734080 - 55733960
Alignment:
Q  1 tcataacgctgacctgctgcccatgtccaattgtccacctaaaaccatgtaaaagtagctgacgcgaagtccaaatactccgccaaacaaag-ttgggtt 99  Q
    |||| ||||||||||||||||||| ||||| |||||||||| | |||| |||||| | |||||| ||| ||||||||||||||||| ||| | |  ||||    
T  55734080 tcatcacgctgacctgctgcccatttccaactgtccacctacatccatataaaagcaactgacgtgaattccaaatactccgccaagcaatgctcaggtt 55733981  T
Q  100 attaccgagtttagcacccaa 120  Q
    || ||||||||||||||||||    
T  55733980 ataaccgagtttagcacccaa 55733960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 6 - 123
Target Start/End: Complemental strand, 2063837 - 2063719
Alignment:
Q  6 acgctgacctgctgcccatgtccaattgtccacctaaaaccatgtaaaagtagctgacgcgaagtccaaatactccgccaaacaaag-ttgggttattac 104  Q
    |||||||| |||||||||| | |||||||| ||||| | |||| ||||||||||||||| ||| ||||||||||||  ||| ||||| | | ||||| ||    
T  2063837 acgctgacatgctgcccattttcaattgtctacctacatccatataaaagtagctgacgtgaattccaaatactccatcaagcaaagctcgagttataac 2063738  T
Q  105 cgagtttagcacccaaaaa 123  Q
     ||||||||||||||||||    
T  2063737 tgagtttagcacccaaaaa 2063719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 17 - 123
Target Start/End: Original strand, 51260659 - 51260766
Alignment:
Q  17 ctgcccatgtccaattgtccacctaaaaccatgtaaaagtagctgacgcgaagtccaaatactccgccaaacaaag-ttgggttattaccgagtttagca 115  Q
    |||||||| |||||||||||| ||| | |||| |||||||| || ||||||| |||||||||||| |||| ||||| | |||||||   |||||||||||    
T  51260659 ctgcccatttccaattgtccatctacatccatataaaagtaacttacgcgaattccaaatactcctccaagcaaagctcgggttatattcgagtttagca 51260758  T
Q  116 cccaaaaa 123  Q
    ||||||||    
T  51260759 cccaaaaa 51260766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 1 - 123
Target Start/End: Complemental strand, 49950393 - 49950270
Alignment:
Q  1 tcataacgctgacctgctgcccatgtccaattgtccacctaaaaccatgtaaaagtagctgacgcgaagtccaaatactccgccaaacaaag-ttgggtt 99  Q
    |||| ||| |||| |||| ||||| |||||||||||||||| |   |||||||||||  | ||||||| ||||||||||||| ||| ||||| | |||||    
T  49950393 tcatcacgttgacatgctacccatttccaattgtccacctacatttatgtaaaagtaattcacgcgaattccaaatactccgtcaagcaaagctcgggtt 49950294  T
Q  100 attaccgagtttagcacccaaaaa 123  Q
    || ||| |||||||| ||||||||    
T  49950293 ataacctagtttagctcccaaaaa 49950270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 43; Significance: 0.000000000000004; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 1 - 122
Target Start/End: Original strand, 11732762 - 11732884
Alignment:
Q  1 tcataacgctgacctgctgcccatgtccaattgtccacctaaaaccatgtaaaagtagctgacgcgaagtccaaatactccgccaaacaaag-ttgggtt 99  Q
    |||| |||| ||| |||||||||| || |||| |||||||| | |||||||||| || |||||||||| |||||||||||| |||   |||| | |||||    
T  11732762 tcatcacgccgacatgctgcccatttctaattatccacctacatccatgtaaaactaactgacgcgaattccaaatactccaccaggaaaagctcgggtt 11732861  T
Q  100 attaccgagtttagcacccaaaa 122  Q
    || ||||||||| ||||||||||    
T  11732862 ataaccgagttttgcacccaaaa 11732884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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